Wall clock time and date at job start Mon Mar 30 2020 06:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 119.99777 * 2 1 4 4 H 1.48500 * 109.47228 * 239.99979 * 3 2 1 5 5 H 1.48501 * 109.47388 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47052 * 119.99901 * 3 2 1 7 7 C 1.37872 * 120.00104 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99946 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99963 * 0.02562 * 7 2 1 10 10 O 1.42900 * 109.46993 * 179.97438 * 9 7 2 11 11 C 1.35796 * 116.99908 * 179.97438 * 10 9 7 12 12 C 1.38571 * 120.13330 * 0.02562 * 11 10 9 13 13 C 1.38185 * 120.08586 * 179.97438 * 12 11 10 14 14 C 1.38443 * 120.35158 * 359.97438 * 13 12 11 15 15 C 1.37917 * 120.27478 * 359.97438 * 14 13 12 16 16 C 1.39559 * 119.90819 * 0.02562 * 15 14 13 17 17 C 1.47717 * 120.17808 * 179.97438 * 16 15 14 18 18 N 1.31295 * 126.39205 * 180.02562 * 17 16 15 19 19 N 1.28661 * 109.25372 * 179.97438 * 18 17 16 20 20 C 1.30344 * 109.53676 * 359.97438 * 19 18 17 21 21 O 1.34467 * 107.64046 * 359.77328 * 20 19 18 22 22 H 0.97002 * 119.99873 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47273 * 59.99661 * 9 7 2 24 24 H 1.08997 * 109.46853 * 299.99823 * 9 7 2 25 25 H 1.08004 * 119.95950 * 359.97438 * 12 11 10 26 26 H 1.07989 * 119.82144 * 179.69812 * 13 12 11 27 27 H 1.07998 * 119.86299 * 180.02562 * 14 13 12 28 28 H 1.08002 * 120.04555 * 180.02562 * 15 14 13 29 29 H 1.08002 * 126.17799 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 8 2.1797 -3.5853 -0.0027 11 6 1.6607 -4.8401 -0.0033 12 6 0.2874 -5.0249 -0.0034 13 6 -0.2397 -6.3023 -0.0046 14 6 0.5978 -7.4046 -0.0060 15 6 1.9668 -7.2377 -0.0070 16 6 2.5112 -5.9527 -0.0058 17 6 3.9766 -5.7670 -0.0062 18 7 4.6166 -4.6206 -0.0048 19 7 5.8840 -4.8422 -0.0052 20 6 6.1018 -6.1273 -0.0063 21 8 4.9064 -6.7432 -0.0015 22 1 -0.4850 0.8401 0.0004 23 1 0.6247 -2.5563 -0.8919 24 1 0.6241 -2.5574 0.8880 25 1 -0.3720 -4.1695 -0.0027 26 1 -1.3106 -6.4413 0.0002 27 1 0.1773 -8.3994 -0.0073 28 1 2.6167 -8.1003 -0.0085 29 1 7.0678 -6.6102 -0.0072 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154457923.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:55 Heat of formation + Delta-G solvation = 3.208520 kcal Electronic energy + Delta-G solvation = -16910.707865 eV Core-core repulsion = 13993.500939 eV Total energy + Delta-G solvation = -2917.206926 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -45.05502 -40.99639 -38.33283 -37.10027 -35.07278 -33.80341 -31.30857 -30.72031 -29.39681 -25.62971 -25.38515 -24.52074 -22.69170 -22.53164 -19.50244 -18.61329 -18.35736 -18.25084 -17.25036 -16.95378 -16.49961 -16.45902 -15.91951 -15.54108 -14.90395 -14.55835 -13.87881 -13.64441 -13.38813 -13.07561 -12.87652 -12.84819 -12.55836 -12.41371 -11.99794 -11.98630 -11.84813 -11.41417 -11.37503 -10.70983 -9.79963 -9.06201 -8.39490 -6.51341 -0.45570 0.43071 0.75603 1.33169 1.36698 1.41273 1.49589 1.57640 2.25613 2.64034 2.76131 2.95074 3.04044 3.64888 3.85582 3.98563 4.17571 4.25279 4.39002 4.46007 4.54715 4.70123 4.82300 4.89759 4.96544 5.28122 5.34989 5.46525 5.51844 5.81459 5.85577 6.48621 6.77265 7.19468 7.38671 8.72424 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.020817 B = 0.007267 C = 0.005402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.736928 B = 3852.282071 C = 5181.873841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.017 3.983 3 Si 0.981 3.019 4 H -0.269 1.269 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.552 4.552 8 H 0.056 0.944 9 C 0.210 3.790 10 O -0.309 6.309 11 C 0.154 3.846 12 C -0.234 4.234 13 C -0.039 4.039 14 C -0.157 4.157 15 C -0.036 4.036 16 C -0.107 4.107 17 C 0.217 3.783 18 N -0.308 5.308 19 N -0.345 5.345 20 C 0.161 3.839 21 O -0.224 6.224 22 H 0.274 0.726 23 H 0.007 0.993 24 H 0.007 0.993 25 H 0.123 0.877 26 H 0.165 0.835 27 H 0.178 0.822 28 H 0.165 0.835 29 H 0.324 0.676 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.551 -18.495 -0.021 18.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.183 4.183 3 Si 0.803 3.197 4 H -0.193 1.193 5 H -0.192 1.192 6 H -0.194 1.194 7 C -0.589 4.589 8 H 0.075 0.925 9 C 0.136 3.864 10 O -0.221 6.221 11 C 0.104 3.896 12 C -0.253 4.253 13 C -0.058 4.058 14 C -0.175 4.175 15 C -0.055 4.055 16 C -0.110 4.110 17 C 0.008 3.992 18 N -0.154 5.154 19 N -0.190 5.190 20 C -0.069 4.069 21 O -0.103 6.103 22 H 0.083 0.917 23 H 0.025 0.975 24 H 0.025 0.975 25 H 0.141 0.859 26 H 0.182 0.818 27 H 0.196 0.804 28 H 0.183 0.817 29 H 0.338 0.662 Dipole moment (debyes) X Y Z Total from point charges 3.857 -16.968 -0.016 17.401 hybrid contribution 0.037 0.168 0.003 0.172 sum 3.894 -16.801 -0.013 17.246 Atomic orbital electron populations 1.70020 1.07375 1.28995 1.49730 1.25818 0.96000 1.02871 0.93571 0.85275 0.78215 0.76939 0.79254 1.19345 1.19199 1.19354 1.21212 0.94031 0.90412 1.53291 0.92535 1.20253 0.88313 0.82610 0.95177 1.86314 1.38043 1.12306 1.85398 1.19608 0.92720 0.85265 0.91965 1.21464 0.92623 1.00737 1.10450 1.21607 1.02187 0.90219 0.91769 1.21398 0.91689 1.00621 1.03758 1.21397 0.97059 0.93300 0.93782 1.16845 0.82598 0.93900 1.17618 1.25600 0.93047 0.81364 0.99151 1.75141 0.98501 1.23347 1.18401 1.74336 1.08636 1.17251 1.18733 1.30932 0.90696 0.88452 0.96806 1.84851 1.16379 1.38636 1.70480 0.91689 0.97546 0.97537 0.85899 0.81789 0.80449 0.81704 0.66212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.10 13.29 21.45 0.28 -54.82 15 2 C 0.02 1.00 5.46 84.65 0.46 1.46 15 3 Si 0.98 45.92 29.54 68.60 2.03 47.95 15 4 H -0.27 -12.32 7.11 99.48 0.71 -11.62 15 5 H -0.27 -11.67 7.11 99.48 0.71 -10.96 15 6 H -0.27 -12.33 7.11 99.48 0.71 -11.62 15 7 C -0.55 -34.21 9.43 25.60 0.24 -33.96 15 8 H 0.06 3.61 7.81 -2.91 -0.02 3.59 15 9 C 0.21 12.06 4.49 71.24 0.32 12.38 15 10 O -0.31 -16.55 8.46 -91.27 -0.77 -17.32 15 11 C 0.15 6.59 6.69 22.79 0.15 6.74 15 12 C -0.23 -8.48 9.03 22.34 0.20 -8.28 15 13 C -0.04 -0.97 10.03 22.31 0.22 -0.74 15 14 C -0.16 -3.12 10.03 22.24 0.22 -2.89 15 15 C -0.04 -0.87 9.72 22.51 0.22 -0.66 15 16 C -0.11 -3.82 5.88 -20.02 -0.12 -3.94 15 17 C 0.22 8.18 7.97 87.28 0.70 8.87 15 18 N -0.31 -13.93 10.76 -166.33 -1.79 -15.72 15 19 N -0.35 -12.94 12.22 -175.19 -2.14 -15.08 15 20 C 0.16 3.84 13.36 130.46 1.74 5.59 15 21 O -0.22 -6.21 10.67 -9.18 -0.10 -6.31 15 22 H 0.27 15.15 8.31 -92.71 -0.77 14.37 15 23 H 0.01 0.40 7.66 -2.39 -0.02 0.38 15 24 H 0.01 0.40 7.66 -2.39 -0.02 0.38 15 25 H 0.12 4.88 6.30 -2.91 -0.02 4.86 15 26 H 0.16 2.79 8.06 -2.92 -0.02 2.77 15 27 H 0.18 1.86 8.06 -2.91 -0.02 1.83 15 28 H 0.17 2.82 7.93 -2.91 -0.02 2.80 15 29 H 0.32 2.45 8.06 -2.91 -0.02 2.43 15 Total: -1.00 -80.57 268.20 3.06 -77.51 By element: Atomic # 1 Polarization: -1.96 SS G_CDS: 1.18 Total: -0.78 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: 4.36 Total: -15.44 kcal Atomic # 7 Polarization: -81.97 SS G_CDS: -3.64 Total: -85.61 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.87 Total: -23.63 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -80.57 3.06 -77.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154457923.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.722 kcal (2) G-P(sol) polarization free energy of solvation -80.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds