Wall clock time and date at job start Mon Mar 30 2020 05:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31693 * 1 3 3 Si 1.86796 * 120.00047 * 2 1 4 4 H 1.48508 * 109.47020 * 269.99888 * 3 2 1 5 5 H 1.48502 * 109.47440 * 29.99659 * 3 2 1 6 6 H 1.48495 * 109.47411 * 150.00093 * 3 2 1 7 7 C 1.38590 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00321 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99925 * 0.02562 * 7 2 1 10 10 C 1.76202 * 99.99977 * 185.68232 * 9 7 2 11 11 C 1.38215 * 120.19612 * 6.96313 * 10 9 7 12 12 C 1.38926 * 120.79243 * 180.02562 * 11 10 9 13 13 C 1.37809 * 120.89431 * 359.97438 * 12 11 10 14 14 O 1.35845 * 120.10483 * 180.02562 * 13 12 11 15 15 C 1.40993 * 119.78896 * 0.02562 * 13 12 11 16 16 C 1.40452 * 121.15659 * 179.97438 * 15 13 12 17 17 C 1.36184 * 119.66878 * 180.02562 * 16 15 13 18 18 C 1.39286 * 120.93925 * 0.02562 * 17 16 15 19 19 C 1.36238 * 120.93755 * 0.02562 * 18 17 16 20 20 C 1.40279 * 119.69081 * 359.67441 * 19 18 17 21 21 H 0.96998 * 120.00447 * 0.02562 * 1 2 3 22 22 H 1.08004 * 119.60305 * 0.02562 * 11 10 9 23 23 H 1.08001 * 119.54692 * 179.97438 * 12 11 10 24 24 H 0.96698 * 113.99888 * 90.00161 * 14 13 12 25 25 H 1.07994 * 120.16213 * 359.97438 * 16 15 13 26 26 H 1.08000 * 119.52892 * 180.02562 * 17 16 15 27 27 H 1.08003 * 119.52915 * 179.97438 * 18 17 16 28 28 H 1.08005 * 120.15678 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3169 0.0000 0.0000 3 14 2.2509 1.6177 0.0000 4 1 2.4985 2.0464 -1.4002 5 1 1.4484 2.6527 0.7000 6 1 3.5485 1.4402 0.7000 7 6 2.0099 -1.2002 0.0005 8 1 3.0900 -1.2002 0.0010 9 16 1.1289 -2.7262 0.0005 10 6 2.4713 -3.8545 0.1731 11 6 3.7497 -3.3835 0.4058 12 6 4.8172 -4.2619 0.5433 13 6 4.6290 -5.6240 0.4519 14 8 5.6841 -6.4685 0.5895 15 6 3.3377 -6.1384 0.2152 16 6 3.1133 -7.5213 0.1163 17 6 1.8536 -7.9851 -0.1135 18 6 0.7815 -7.1069 -0.2528 19 6 0.9636 -5.7596 -0.1637 20 6 2.2464 -5.2464 0.0786 21 1 -0.4851 0.8400 -0.0004 22 1 3.9209 -2.3198 0.4816 23 1 5.8079 -3.8720 0.7243 24 1 5.8453 -6.7514 1.5000 25 1 3.9357 -8.2134 0.2212 26 1 1.6835 -9.0489 -0.1887 27 1 -0.2080 -7.4995 -0.4350 28 1 0.1233 -5.0901 -0.2742 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164691991.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:49 Heat of formation + Delta-G solvation = -8.203053 kcal Electronic energy + Delta-G solvation = -14595.735514 eV Core-core repulsion = 12088.493865 eV Total energy + Delta-G solvation = -2507.241649 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.84875 -37.15238 -35.24863 -32.87383 -31.30729 -29.86241 -28.21417 -25.84783 -22.99370 -22.45428 -21.42929 -18.31294 -17.87916 -17.03548 -16.04583 -15.78134 -15.16532 -14.71159 -14.04644 -13.61828 -13.38212 -13.13917 -12.83975 -12.49105 -12.25236 -11.31812 -11.29762 -11.15691 -11.00872 -10.85032 -10.62955 -10.08134 -9.83741 -9.65538 -9.23353 -8.76268 -8.14667 -7.87161 -6.61916 -6.44256 -4.31113 0.97149 1.54517 2.45816 2.99169 3.06135 3.13157 3.27067 3.46469 3.91337 4.45384 4.75072 4.83099 4.94478 5.19685 5.28416 5.40156 5.56585 5.84663 5.86554 6.01685 6.15958 6.42667 6.50302 6.66459 6.75908 6.87269 7.00859 7.12868 7.23697 7.37320 7.47758 8.04570 8.10449 8.86434 10.44533 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.031600 B = 0.007011 C = 0.005761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.855028 B = 3992.839987 C = 4859.082803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.079 3.921 3 Si 0.926 3.074 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.555 4.555 8 H 0.097 0.903 9 S 0.080 5.920 10 C -0.081 4.081 11 C -0.158 4.158 12 C -0.095 4.095 13 C 0.038 3.962 14 O -0.495 6.495 15 C -0.044 4.044 16 C -0.116 4.116 17 C -0.119 4.119 18 C -0.139 4.139 19 C -0.087 4.087 20 C -0.042 4.042 21 H 0.276 0.724 22 H 0.140 0.860 23 H 0.117 0.883 24 H 0.372 0.628 25 H 0.122 0.878 26 H 0.115 0.885 27 H 0.117 0.883 28 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.290 -9.729 1.816 10.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.132 4.132 3 Si 0.751 3.249 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.702 4.702 8 H 0.114 0.886 9 S 0.341 5.659 10 C -0.198 4.198 11 C -0.188 4.188 12 C -0.116 4.116 13 C -0.013 4.013 14 O -0.303 6.303 15 C -0.046 4.046 16 C -0.134 4.134 17 C -0.137 4.137 18 C -0.158 4.158 19 C -0.106 4.106 20 C -0.047 4.047 21 H 0.086 0.914 22 H 0.158 0.842 23 H 0.135 0.865 24 H 0.226 0.774 25 H 0.140 0.860 26 H 0.133 0.867 27 H 0.135 0.865 28 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.670 -9.439 1.067 9.867 hybrid contribution 1.881 1.136 0.641 2.289 sum 4.551 -8.302 1.708 9.621 Atomic orbital electron populations 1.70011 1.06150 1.28608 1.44610 1.25118 0.95181 0.99828 0.93062 0.86017 0.79595 0.80389 0.78852 1.19757 1.20385 1.19106 1.23454 0.96374 0.91108 1.59258 0.88565 1.83284 1.05820 0.96741 1.80066 1.22957 1.00553 0.96426 0.99845 1.21152 0.91307 1.00604 1.05744 1.21163 0.98794 0.92341 0.99338 1.18067 0.85557 0.88444 1.09195 1.84831 1.48088 1.65433 1.31925 1.18148 0.92377 0.93341 1.00758 1.20803 0.97039 0.94067 1.01536 1.20726 0.92986 0.99174 1.00825 1.20699 0.98716 0.93325 1.03086 1.21065 0.96185 0.95573 0.97781 1.17593 0.93096 0.91398 1.02584 0.91430 0.84243 0.86476 0.77440 0.86039 0.86733 0.86487 0.85167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.50 13.22 55.48 0.73 -22.77 15 2 C 0.08 2.06 5.49 -17.48 -0.10 1.96 15 3 Si 0.93 19.95 29.55 -169.99 -5.02 14.92 15 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 15 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 15 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 15 7 C -0.56 -14.59 8.98 30.86 0.28 -14.32 15 8 H 0.10 2.43 4.98 -52.48 -0.26 2.17 15 9 S 0.08 1.96 20.06 -107.50 -2.16 -0.19 15 10 C -0.08 -1.79 6.14 -38.42 -0.24 -2.03 15 11 C -0.16 -3.35 9.21 -39.33 -0.36 -3.71 15 12 C -0.10 -1.75 9.92 -39.48 -0.39 -2.15 15 13 C 0.04 0.68 6.72 -38.70 -0.26 0.42 15 14 O -0.49 -7.42 12.71 -19.25 -0.24 -7.67 15 15 C -0.04 -0.82 5.75 -106.73 -0.61 -1.44 15 16 C -0.12 -1.83 9.56 -39.49 -0.38 -2.20 15 17 C -0.12 -1.72 9.95 -39.93 -0.40 -2.12 15 18 C -0.14 -2.14 9.95 -39.91 -0.40 -2.54 15 19 C -0.09 -1.60 9.39 -39.53 -0.37 -1.97 15 20 C -0.04 -0.85 5.75 -106.67 -0.61 -1.46 15 21 H 0.28 6.99 8.31 -40.82 -0.34 6.65 15 22 H 0.14 3.02 4.98 -52.48 -0.26 2.76 15 23 H 0.12 1.86 8.06 -52.49 -0.42 1.44 15 24 H 0.37 3.77 9.06 45.56 0.41 4.18 15 25 H 0.12 1.66 7.60 -52.49 -0.40 1.26 15 26 H 0.11 1.29 8.06 -52.49 -0.42 0.87 15 27 H 0.12 1.46 8.06 -52.48 -0.42 1.04 15 28 H 0.13 2.38 6.85 -52.48 -0.36 2.03 15 LS Contribution 259.63 15.07 3.91 3.91 Total: -1.00 -29.13 259.63 -7.89 -37.02 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -1.27 Total: 6.31 kcal Atomic # 6 Polarization: -27.70 SS G_CDS: -3.84 Total: -31.54 kcal Atomic # 7 Polarization: -23.50 SS G_CDS: 0.73 Total: -22.77 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: -0.24 Total: -7.67 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.92 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -2.16 Total: -0.19 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.13 -7.89 -37.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164691991.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.813 kcal (2) G-P(sol) polarization free energy of solvation -29.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds