Wall clock time and date at job start Mon Mar 30 2020 05:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31693 * 1 3 3 Si 1.86796 * 120.00047 * 2 1 4 4 H 1.48508 * 109.47020 * 269.99888 * 3 2 1 5 5 H 1.48502 * 109.47440 * 29.99659 * 3 2 1 6 6 H 1.48495 * 109.47411 * 150.00093 * 3 2 1 7 7 C 1.38590 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00321 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99925 * 0.02562 * 7 2 1 10 10 C 1.76202 * 99.99977 * 185.68232 * 9 7 2 11 11 C 1.38215 * 120.19612 * 6.96313 * 10 9 7 12 12 C 1.38926 * 120.79243 * 180.02562 * 11 10 9 13 13 C 1.37809 * 120.89431 * 359.97438 * 12 11 10 14 14 O 1.35845 * 120.10483 * 180.02562 * 13 12 11 15 15 C 1.40993 * 119.78896 * 0.02562 * 13 12 11 16 16 C 1.40452 * 121.15659 * 179.97438 * 15 13 12 17 17 C 1.36184 * 119.66878 * 180.02562 * 16 15 13 18 18 C 1.39286 * 120.93925 * 0.02562 * 17 16 15 19 19 C 1.36238 * 120.93755 * 0.02562 * 18 17 16 20 20 C 1.40279 * 119.69081 * 359.67441 * 19 18 17 21 21 H 0.96998 * 120.00447 * 0.02562 * 1 2 3 22 22 H 1.08004 * 119.60305 * 0.02562 * 11 10 9 23 23 H 1.08001 * 119.54692 * 179.97438 * 12 11 10 24 24 H 0.96698 * 113.99888 * 90.00161 * 14 13 12 25 25 H 1.07994 * 120.16213 * 359.97438 * 16 15 13 26 26 H 1.08000 * 119.52892 * 180.02562 * 17 16 15 27 27 H 1.08003 * 119.52915 * 179.97438 * 18 17 16 28 28 H 1.08005 * 120.15678 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3169 0.0000 0.0000 3 14 2.2509 1.6177 0.0000 4 1 2.4985 2.0464 -1.4002 5 1 1.4484 2.6527 0.7000 6 1 3.5485 1.4402 0.7000 7 6 2.0099 -1.2002 0.0005 8 1 3.0900 -1.2002 0.0010 9 16 1.1289 -2.7262 0.0005 10 6 2.4713 -3.8545 0.1731 11 6 3.7497 -3.3835 0.4058 12 6 4.8172 -4.2619 0.5433 13 6 4.6290 -5.6240 0.4519 14 8 5.6841 -6.4685 0.5895 15 6 3.3377 -6.1384 0.2152 16 6 3.1133 -7.5213 0.1163 17 6 1.8536 -7.9851 -0.1135 18 6 0.7815 -7.1069 -0.2528 19 6 0.9636 -5.7596 -0.1637 20 6 2.2464 -5.2464 0.0786 21 1 -0.4851 0.8400 -0.0004 22 1 3.9209 -2.3198 0.4816 23 1 5.8079 -3.8720 0.7243 24 1 5.8453 -6.7514 1.5000 25 1 3.9357 -8.2134 0.2212 26 1 1.6835 -9.0489 -0.1887 27 1 -0.2080 -7.4995 -0.4350 28 1 0.1233 -5.0901 -0.2742 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164691991.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:48 Heat of formation + Delta-G solvation = -26.289936 kcal Electronic energy + Delta-G solvation = -14596.519820 eV Core-core repulsion = 12088.493865 eV Total energy + Delta-G solvation = -2508.025955 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.25587 -38.45999 -36.68191 -34.80145 -32.65920 -31.27883 -29.69425 -27.74725 -24.38815 -23.89279 -22.84687 -20.08167 -19.30399 -18.39828 -17.46849 -17.28706 -17.00149 -16.12918 -15.42638 -15.20079 -14.77572 -14.61882 -14.28433 -13.92048 -13.89208 -13.04601 -12.94107 -12.55786 -12.51665 -12.31126 -12.16485 -11.70241 -11.35944 -11.28030 -10.82616 -10.57547 -9.55816 -9.43208 -8.53489 -8.16507 -6.28693 -0.42758 0.12353 1.05268 1.24947 1.37042 1.44261 1.57427 2.05831 2.15043 2.85792 3.07479 3.13443 3.37085 3.88468 3.97123 4.12539 4.19426 4.49901 4.57678 4.62702 4.76852 4.97840 5.16224 5.25872 5.33168 5.43836 5.48179 5.64337 5.73524 5.83986 6.09284 6.12632 6.90954 6.94165 8.55107 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.031600 B = 0.007011 C = 0.005761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.855028 B = 3992.839987 C = 4859.082803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.027 3.973 3 Si 0.995 3.005 4 H -0.267 1.267 5 H -0.271 1.271 6 H -0.260 1.260 7 C -0.571 4.571 8 H 0.096 0.904 9 S 0.007 5.993 10 C -0.103 4.103 11 C -0.159 4.159 12 C -0.118 4.118 13 C 0.075 3.925 14 O -0.492 6.492 15 C -0.072 4.072 16 C -0.109 4.109 17 C -0.112 4.112 18 C -0.116 4.116 19 C -0.123 4.123 20 C -0.054 4.054 21 H 0.278 0.722 22 H 0.125 0.875 23 H 0.143 0.857 24 H 0.403 0.597 25 H 0.152 0.848 26 H 0.160 0.840 27 H 0.150 0.850 28 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.192 -12.646 2.023 14.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.179 4.179 3 Si 0.816 3.184 4 H -0.192 1.192 5 H -0.196 1.196 6 H -0.184 1.184 7 C -0.718 4.718 8 H 0.114 0.886 9 S 0.263 5.737 10 C -0.219 4.219 11 C -0.188 4.188 12 C -0.138 4.138 13 C 0.025 3.975 14 O -0.304 6.304 15 C -0.074 4.074 16 C -0.127 4.127 17 C -0.130 4.130 18 C -0.135 4.135 19 C -0.141 4.141 20 C -0.059 4.059 21 H 0.087 0.913 22 H 0.143 0.857 23 H 0.161 0.839 24 H 0.261 0.739 25 H 0.170 0.830 26 H 0.178 0.822 27 H 0.168 0.832 28 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.644 -12.442 1.301 13.344 hybrid contribution 1.444 1.584 0.595 2.224 sum 6.088 -10.858 1.896 12.592 Atomic orbital electron populations 1.70127 1.07654 1.29406 1.46408 1.26066 0.96015 1.03212 0.92610 0.84998 0.78402 0.75972 0.79043 1.19175 1.19614 1.18371 1.23700 0.96531 0.91951 1.59615 0.88592 1.83220 1.08507 0.97882 1.84081 1.22869 0.99653 0.96916 1.02446 1.21210 0.91943 1.00504 1.05101 1.21319 0.99123 0.92594 1.00795 1.18154 0.85886 0.88517 1.04903 1.84740 1.46610 1.64522 1.34496 1.18476 0.92128 0.94769 1.02036 1.21184 0.98734 0.92843 0.99977 1.21234 0.91853 1.01271 0.98632 1.21170 1.00880 0.92009 0.99416 1.21115 0.95367 0.97112 1.00554 1.17823 0.94697 0.90713 1.02677 0.91284 0.85739 0.83885 0.73913 0.83035 0.82198 0.83236 0.86589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.72 13.22 21.61 0.29 -51.43 15 2 C 0.03 1.48 5.49 84.80 0.47 1.95 15 3 Si 0.99 42.16 29.55 68.60 2.03 44.19 15 4 H -0.27 -10.95 7.11 99.48 0.71 -10.24 15 5 H -0.27 -11.04 7.11 99.48 0.71 -10.34 15 6 H -0.26 -10.55 7.11 99.48 0.71 -9.84 15 7 C -0.57 -31.78 8.98 67.90 0.61 -31.17 15 8 H 0.10 5.13 4.98 -2.91 -0.01 5.12 15 9 S 0.01 0.37 20.06 -56.49 -1.13 -0.76 15 10 C -0.10 -4.80 6.14 23.02 0.14 -4.66 15 11 C -0.16 -6.91 9.21 22.43 0.21 -6.70 15 12 C -0.12 -4.20 9.92 22.33 0.22 -3.98 15 13 C 0.08 2.48 6.72 22.84 0.15 2.63 15 14 O -0.49 -12.40 12.71 -91.81 -1.17 -13.57 15 15 C -0.07 -2.50 5.75 -21.23 -0.12 -2.63 15 16 C -0.11 -2.94 9.56 22.33 0.21 -2.72 15 17 C -0.11 -2.67 9.95 22.04 0.22 -2.45 15 18 C -0.12 -3.21 9.95 22.06 0.22 -2.99 15 19 C -0.12 -4.50 9.39 22.30 0.21 -4.29 15 20 C -0.05 -2.21 5.75 -21.19 -0.12 -2.34 15 21 H 0.28 14.74 8.31 -92.71 -0.77 13.97 15 22 H 0.13 5.69 4.98 -2.91 -0.01 5.68 15 23 H 0.14 4.25 8.06 -2.91 -0.02 4.23 15 24 H 0.40 5.95 9.06 -74.06 -0.67 5.28 15 25 H 0.15 3.18 7.60 -2.91 -0.02 3.16 15 26 H 0.16 2.45 8.06 -2.91 -0.02 2.43 15 27 H 0.15 3.14 8.06 -2.91 -0.02 3.11 15 28 H 0.12 4.52 6.85 -2.91 -0.02 4.50 15 Total: -1.00 -66.84 259.63 2.97 -63.88 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.54 Total: 17.06 kcal Atomic # 6 Polarization: -61.77 SS G_CDS: 2.42 Total: -59.35 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: 0.29 Total: -51.43 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: -1.17 Total: -13.57 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Atomic # 16 Polarization: 0.37 SS G_CDS: -1.13 Total: -0.76 kcal Total: -66.84 2.97 -63.88 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164691991.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.585 kcal (2) G-P(sol) polarization free energy of solvation -66.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds