Wall clock time and date at job start Mon Mar 30 2020 05:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38384 * 120.85277 * 2 1 4 4 C 1.38325 * 119.30562 * 180.27475 * 3 2 1 5 5 N 1.31950 * 121.09446 * 359.72484 * 4 3 2 6 6 C 1.31662 * 121.88096 * 359.97438 * 5 4 3 7 7 C 1.39624 * 120.55732 * 0.02562 * 6 5 4 8 8 C 1.47771 * 120.56374 * 179.97438 * 7 6 5 9 9 N 1.29839 * 125.06687 * 312.66329 * 8 7 6 10 10 C 1.32763 * 116.00762 * 180.02562 * 9 8 7 11 11 C 1.41153 * 122.77241 * 179.97438 * 10 9 8 12 12 H 1.07997 * 119.99823 * 186.66353 * 11 10 9 13 13 C 1.39663 * 119.99925 * 6.65786 * 11 10 9 14 14 N 1.31046 * 119.99367 * 174.46555 * 13 11 10 15 15 Si 1.86795 * 120.00106 * 354.46297 * 13 11 10 16 16 H 1.48502 * 109.47102 * 179.97438 * 15 13 11 17 17 H 1.48501 * 109.47470 * 300.00184 * 15 13 11 18 18 H 1.48500 * 109.47081 * 60.00172 * 15 13 11 19 19 C 1.37982 * 114.45093 * 0.24005 * 10 9 8 20 20 S 1.70992 * 108.89547 * 359.63297 * 19 10 9 21 21 H 1.08990 * 109.46961 * 273.04087 * 1 2 3 22 22 H 1.09002 * 109.46976 * 33.04607 * 1 2 3 23 23 H 1.09000 * 109.46691 * 153.04085 * 1 2 3 24 24 H 1.07993 * 120.34933 * 359.97438 * 3 2 1 25 25 H 1.08004 * 119.45248 * 179.73930 * 4 3 2 26 26 H 1.08006 * 119.72239 * 179.97438 * 6 5 4 27 27 H 0.96991 * 120.00509 * 356.01713 * 14 13 11 28 28 H 1.08006 * 125.55169 * 179.75571 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2168 1.1880 0.0000 4 6 3.5995 1.1507 -0.0058 5 7 4.2502 0.0028 -0.0059 6 6 3.6205 -1.1535 0.0000 7 6 2.2251 -1.2019 0.0061 8 6 1.5183 -2.4996 0.0121 9 7 1.7906 -3.5010 -0.7682 10 6 1.0394 -4.5840 -0.6091 11 6 1.2113 -5.7532 -1.3809 12 1 0.5086 -6.5684 -1.2901 13 6 2.2899 -5.8560 -2.2621 14 7 2.5120 -6.9804 -2.8975 15 14 3.4159 -4.3907 -2.5350 16 1 4.4760 -4.7556 -3.5088 17 1 2.6256 -3.2513 -3.0666 18 1 4.0416 -4.0004 -1.2461 19 6 0.0729 -4.4701 0.3691 20 16 0.1821 -2.9175 1.0773 21 1 -0.3633 0.0545 1.0261 22 1 -0.3633 0.8614 -0.5604 23 1 -0.3633 -0.9160 -0.4659 24 1 1.6965 2.1344 -0.0004 25 1 4.1557 2.0765 -0.0101 26 1 4.1882 -2.0724 -0.0007 27 1 1.9631 -7.7584 -2.7129 28 1 -0.6357 -5.2373 0.6442 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168187804.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:22 Heat of formation + Delta-G solvation = 52.245166 kcal Electronic energy + Delta-G solvation = -14960.312300 eV Core-core repulsion = 12487.984634 eV Total energy + Delta-G solvation = -2472.327666 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.09543 -38.30720 -34.16949 -33.41918 -31.73439 -29.05790 -27.68031 -25.98940 -24.57815 -22.22718 -21.11382 -19.27518 -18.35918 -16.69595 -16.22808 -16.11551 -15.42314 -14.32978 -14.21295 -13.42292 -13.33286 -13.05991 -12.77963 -12.65263 -12.60033 -12.33560 -12.03039 -11.38584 -10.82163 -10.75202 -10.26859 -9.70593 -9.47672 -9.36783 -9.27767 -9.03400 -8.41282 -8.17081 -7.64061 -7.26735 -4.62974 0.88249 1.32725 1.91031 2.40643 3.22005 3.38297 3.52155 3.86635 3.92504 4.07387 4.30932 4.49500 4.73966 4.81497 4.85887 5.17196 5.24109 5.53682 5.57260 5.64713 5.83108 6.03275 6.11226 6.23303 6.49833 6.77619 6.79225 7.04252 7.52313 7.97478 8.07314 8.09021 8.63202 8.92831 10.06959 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.024956 B = 0.009787 C = 0.007518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.724146 B = 2860.307436 C = 3723.667982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.022 4.022 3 C -0.176 4.176 4 C 0.099 3.901 5 N -0.488 5.488 6 C 0.136 3.864 7 C -0.059 4.059 8 C 0.095 3.905 9 N -0.468 5.468 10 C 0.212 3.788 11 C -0.477 4.477 12 H 0.083 0.917 13 C 0.043 3.957 14 N -0.818 5.818 15 Si 1.129 2.871 16 H -0.317 1.317 17 H -0.285 1.285 18 H -0.282 1.282 19 C -0.450 4.450 20 S 0.055 5.945 21 H 0.081 0.919 22 H 0.073 0.927 23 H 0.081 0.919 24 H 0.136 0.864 25 H 0.155 0.845 26 H 0.163 0.837 27 H 0.282 0.718 28 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.698 14.210 5.601 15.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.032 4.032 3 C -0.196 4.196 4 C -0.058 4.058 5 N -0.197 5.197 6 C -0.024 4.024 7 C -0.065 4.065 8 C -0.182 4.182 9 N -0.188 5.188 10 C 0.089 3.911 11 C -0.512 4.512 12 H 0.101 0.899 13 C -0.176 4.176 14 N -0.441 5.441 15 Si 0.962 3.038 16 H -0.248 1.248 17 H -0.212 1.212 18 H -0.209 1.209 19 C -0.589 4.589 20 S 0.307 5.693 21 H 0.100 0.900 22 H 0.091 0.909 23 H 0.100 0.900 24 H 0.154 0.846 25 H 0.173 0.827 26 H 0.180 0.820 27 H 0.093 0.907 28 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.288 15.044 5.104 15.889 hybrid contribution -2.421 -1.751 0.396 3.014 sum -2.133 13.294 5.500 14.544 Atomic orbital electron populations 1.21018 0.89925 1.04063 1.03260 1.20414 0.96983 0.91722 0.94098 1.21881 0.95493 0.98121 1.04114 1.22811 0.91690 0.96341 0.94977 1.67712 1.40781 0.98245 1.12953 1.23096 0.90522 0.96348 0.92462 1.18920 0.94119 0.89944 1.03476 1.25073 0.99180 0.95634 0.98274 1.66047 1.27818 1.00926 1.24037 1.17935 0.88908 0.90916 0.93306 1.20051 1.11143 0.99601 1.20385 0.89939 1.27487 0.97310 1.02579 0.90245 1.70727 1.37175 1.01845 1.34377 0.82361 0.73814 0.71896 0.75734 1.24826 1.21201 1.20929 1.25274 1.17103 1.02311 1.14240 1.82611 1.33453 1.12040 1.41230 0.90002 0.90853 0.90030 0.84570 0.82741 0.81991 0.90676 0.83704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.59 8.79 36.01 0.32 -1.27 15 2 C -0.02 -0.33 5.95 -103.90 -0.62 -0.94 15 3 C -0.18 -2.12 9.82 -39.50 -0.39 -2.51 15 4 C 0.10 1.26 11.17 -17.47 -0.20 1.07 15 5 N -0.49 -7.92 10.35 -12.89 -0.13 -8.05 15 6 C 0.14 2.45 10.96 -17.11 -0.19 2.26 15 7 C -0.06 -1.07 5.86 -104.82 -0.61 -1.69 15 8 C 0.10 2.03 6.10 -14.50 -0.09 1.95 15 9 N -0.47 -11.71 5.32 -9.17 -0.05 -11.76 15 10 C 0.21 5.59 6.28 -86.45 -0.54 5.05 15 11 C -0.48 -13.45 9.66 -37.94 -0.37 -13.81 15 12 H 0.08 2.35 8.06 -52.49 -0.42 1.93 15 13 C 0.04 1.21 5.51 -17.35 -0.10 1.11 15 14 N -0.82 -23.04 13.67 55.53 0.76 -22.28 15 15 Si 1.13 28.36 25.59 -169.99 -4.35 24.01 15 16 H -0.32 -7.84 7.11 56.52 0.40 -7.44 15 17 H -0.28 -7.18 7.06 56.52 0.40 -6.78 15 18 H -0.28 -6.82 6.50 56.52 0.37 -6.45 15 19 C -0.45 -10.71 10.99 30.64 0.34 -10.38 15 20 S 0.05 1.07 20.97 -107.50 -2.25 -1.18 15 21 H 0.08 0.91 8.14 -51.93 -0.42 0.49 15 22 H 0.07 0.73 8.12 -51.93 -0.42 0.31 15 23 H 0.08 1.23 6.22 -51.93 -0.32 0.91 15 24 H 0.14 1.15 8.06 -52.49 -0.42 0.73 15 25 H 0.16 1.40 8.06 -52.48 -0.42 0.98 15 26 H 0.16 3.03 7.68 -52.48 -0.40 2.62 15 27 H 0.28 7.63 8.73 -40.82 -0.36 7.28 15 28 H 0.15 3.33 8.06 -52.48 -0.42 2.91 15 LS Contribution 258.78 15.07 3.90 3.90 Total: -1.00 -30.03 258.78 -7.02 -37.06 By element: Atomic # 1 Polarization: -0.08 SS G_CDS: -2.45 Total: -2.53 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: -2.44 Total: -19.17 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: 0.58 Total: -42.09 kcal Atomic # 14 Polarization: 28.36 SS G_CDS: -4.35 Total: 24.01 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.25 Total: -1.18 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -30.03 -7.02 -37.06 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168187804.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.301 kcal (2) G-P(sol) polarization free energy of solvation -30.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds