Wall clock time and date at job start Mon Mar 30 2020 05:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38384 * 120.85277 * 2 1 4 4 C 1.38325 * 119.30562 * 180.27475 * 3 2 1 5 5 N 1.31950 * 121.09446 * 359.72484 * 4 3 2 6 6 C 1.31662 * 121.88096 * 359.97438 * 5 4 3 7 7 C 1.39624 * 120.55732 * 0.02562 * 6 5 4 8 8 C 1.47771 * 120.56374 * 179.97438 * 7 6 5 9 9 N 1.29839 * 125.06687 * 312.66329 * 8 7 6 10 10 C 1.32763 * 116.00762 * 180.02562 * 9 8 7 11 11 C 1.41153 * 122.77241 * 179.97438 * 10 9 8 12 12 H 1.07997 * 119.99823 * 186.66353 * 11 10 9 13 13 C 1.39663 * 119.99925 * 6.65786 * 11 10 9 14 14 N 1.31046 * 119.99367 * 174.46555 * 13 11 10 15 15 Si 1.86795 * 120.00106 * 354.46297 * 13 11 10 16 16 H 1.48502 * 109.47102 * 179.97438 * 15 13 11 17 17 H 1.48501 * 109.47470 * 300.00184 * 15 13 11 18 18 H 1.48500 * 109.47081 * 60.00172 * 15 13 11 19 19 C 1.37982 * 114.45093 * 0.24005 * 10 9 8 20 20 S 1.70992 * 108.89547 * 359.63297 * 19 10 9 21 21 H 1.08990 * 109.46961 * 273.04087 * 1 2 3 22 22 H 1.09002 * 109.46976 * 33.04607 * 1 2 3 23 23 H 1.09000 * 109.46691 * 153.04085 * 1 2 3 24 24 H 1.07993 * 120.34933 * 359.97438 * 3 2 1 25 25 H 1.08004 * 119.45248 * 179.73930 * 4 3 2 26 26 H 1.08006 * 119.72239 * 179.97438 * 6 5 4 27 27 H 0.96991 * 120.00509 * 356.01713 * 14 13 11 28 28 H 1.08006 * 125.55169 * 179.75571 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2168 1.1880 0.0000 4 6 3.5995 1.1507 -0.0058 5 7 4.2502 0.0028 -0.0059 6 6 3.6205 -1.1535 0.0000 7 6 2.2251 -1.2019 0.0061 8 6 1.5183 -2.4996 0.0121 9 7 1.7906 -3.5010 -0.7682 10 6 1.0394 -4.5840 -0.6091 11 6 1.2113 -5.7532 -1.3809 12 1 0.5086 -6.5684 -1.2901 13 6 2.2899 -5.8560 -2.2621 14 7 2.5120 -6.9804 -2.8975 15 14 3.4159 -4.3907 -2.5350 16 1 4.4760 -4.7556 -3.5088 17 1 2.6256 -3.2513 -3.0666 18 1 4.0416 -4.0004 -1.2461 19 6 0.0729 -4.4701 0.3691 20 16 0.1821 -2.9175 1.0773 21 1 -0.3633 0.0545 1.0261 22 1 -0.3633 0.8614 -0.5604 23 1 -0.3633 -0.9160 -0.4659 24 1 1.6965 2.1344 -0.0004 25 1 4.1557 2.0765 -0.0101 26 1 4.1882 -2.0724 -0.0007 27 1 1.9631 -7.7584 -2.7129 28 1 -0.6357 -5.2373 0.6442 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168187804.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:21 Heat of formation + Delta-G solvation = 32.918342 kcal Electronic energy + Delta-G solvation = -14961.150374 eV Core-core repulsion = 12487.984634 eV Total energy + Delta-G solvation = -2473.165740 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.31611 -40.08421 -35.70174 -35.05283 -33.10129 -30.70133 -28.79980 -27.97177 -26.01169 -23.47559 -22.54229 -21.21775 -20.19423 -18.28842 -17.51996 -17.43549 -16.95085 -15.88542 -15.53229 -15.09216 -14.90585 -14.85294 -14.33217 -13.87823 -13.79170 -13.72930 -13.59852 -12.81091 -12.70727 -12.43077 -12.08600 -11.72635 -11.37669 -10.72899 -10.55837 -10.28418 -10.14811 -9.91995 -9.46241 -9.32356 -6.70553 -0.48205 0.20984 0.28531 0.78054 1.35123 1.39949 1.48715 1.92827 2.05889 2.30801 2.76331 3.09062 3.18922 3.54552 3.71813 3.81613 4.13864 4.35753 4.56779 4.62423 4.73663 4.78799 4.86590 4.94857 5.07350 5.18139 5.32798 5.39157 5.71052 5.90397 6.03788 6.60481 6.93880 7.05578 7.96693 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.024956 B = 0.009787 C = 0.007518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.724146 B = 2860.307436 C = 3723.667982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.022 4.022 3 C -0.157 4.157 4 C 0.107 3.893 5 N -0.508 5.508 6 C 0.120 3.880 7 C -0.097 4.097 8 C 0.099 3.901 9 N -0.510 5.510 10 C 0.193 3.807 11 C -0.515 4.515 12 H 0.060 0.940 13 C 0.016 3.984 14 N -0.847 5.847 15 Si 1.164 2.836 16 H -0.316 1.316 17 H -0.290 1.290 18 H -0.277 1.277 19 C -0.462 4.462 20 S 0.156 5.844 21 H 0.101 0.899 22 H 0.108 0.892 23 H 0.052 0.948 24 H 0.187 0.813 25 H 0.199 0.801 26 H 0.140 0.860 27 H 0.278 0.722 28 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.339 18.797 7.114 20.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.032 4.032 3 C -0.176 4.176 4 C -0.050 4.050 5 N -0.217 5.217 6 C -0.039 4.039 7 C -0.103 4.103 8 C -0.177 4.177 9 N -0.231 5.231 10 C 0.070 3.930 11 C -0.550 4.550 12 H 0.079 0.921 13 C -0.198 4.198 14 N -0.472 5.472 15 Si 0.995 3.005 16 H -0.247 1.247 17 H -0.218 1.218 18 H -0.204 1.204 19 C -0.601 4.601 20 S 0.410 5.590 21 H 0.119 0.881 22 H 0.126 0.874 23 H 0.071 0.929 24 H 0.204 0.796 25 H 0.216 0.784 26 H 0.157 0.843 27 H 0.089 0.911 28 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.378 19.636 6.653 20.736 hybrid contribution -2.356 -2.844 0.152 3.697 sum -2.734 16.791 6.805 18.323 Atomic orbital electron populations 1.21107 0.88392 1.04204 1.04720 1.20771 0.98158 0.91255 0.93007 1.22381 0.95160 0.98918 1.01144 1.23642 0.92756 0.96498 0.92093 1.67735 1.41424 0.98695 1.13893 1.22825 0.90512 0.96667 0.93935 1.19002 0.94368 0.89727 1.07208 1.25742 0.99122 0.95956 0.96899 1.65957 1.29210 1.01550 1.26390 1.18012 0.90015 0.91231 0.93789 1.20016 1.11814 1.00457 1.22726 0.92128 1.28199 0.97999 1.03558 0.90048 1.70754 1.38159 1.02176 1.36111 0.81878 0.72824 0.70044 0.75761 1.24747 1.21753 1.20393 1.25734 1.15666 1.05190 1.13524 1.82102 1.31363 1.07323 1.38241 0.88091 0.87384 0.92874 0.79622 0.78416 0.84268 0.91148 0.83442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 8.79 71.24 0.63 -1.99 15 2 C -0.02 -0.55 5.95 -19.40 -0.12 -0.67 15 3 C -0.16 -2.83 9.82 22.33 0.22 -2.61 15 4 C 0.11 2.19 11.17 84.70 0.95 3.14 15 5 N -0.51 -15.20 10.35 -194.69 -2.01 -17.22 15 6 C 0.12 4.22 10.96 85.05 0.93 5.16 15 7 C -0.10 -3.36 5.86 -19.99 -0.12 -3.48 15 8 C 0.10 4.11 6.10 87.51 0.53 4.65 15 9 N -0.51 -25.80 5.32 -182.93 -0.97 -26.77 15 10 C 0.19 10.48 6.28 39.66 0.25 10.73 15 11 C -0.51 -30.57 9.66 23.33 0.23 -30.34 15 12 H 0.06 3.70 8.06 -2.91 -0.02 3.68 15 13 C 0.02 0.95 5.51 85.15 0.47 1.42 15 14 N -0.85 -50.18 13.67 21.78 0.30 -49.88 15 15 Si 1.16 59.97 25.59 68.60 1.76 61.73 15 16 H -0.32 -15.82 7.11 99.48 0.71 -15.11 15 17 H -0.29 -14.91 7.06 99.48 0.70 -14.21 15 18 H -0.28 -13.77 6.50 99.48 0.65 -13.13 15 19 C -0.46 -21.92 10.99 67.76 0.74 -21.18 15 20 S 0.16 5.73 20.97 -56.49 -1.18 4.55 15 21 H 0.10 1.70 8.14 -2.39 -0.02 1.68 15 22 H 0.11 1.50 8.12 -2.39 -0.02 1.48 15 23 H 0.05 1.42 6.22 -2.39 -0.01 1.40 15 24 H 0.19 1.58 8.06 -2.91 -0.02 1.55 15 25 H 0.20 2.27 8.06 -2.91 -0.02 2.25 15 26 H 0.14 5.36 7.68 -2.91 -0.02 5.34 15 27 H 0.28 16.02 8.73 -92.71 -0.81 15.21 15 28 H 0.15 6.79 8.06 -2.91 -0.02 6.76 15 Total: -1.00 -69.53 258.78 3.67 -65.86 By element: Atomic # 1 Polarization: -4.17 SS G_CDS: 1.08 Total: -3.10 kcal Atomic # 6 Polarization: -39.89 SS G_CDS: 4.71 Total: -35.17 kcal Atomic # 7 Polarization: -91.18 SS G_CDS: -2.69 Total: -93.87 kcal Atomic # 14 Polarization: 59.97 SS G_CDS: 1.76 Total: 61.73 kcal Atomic # 16 Polarization: 5.73 SS G_CDS: -1.18 Total: 4.55 kcal Total: -69.53 3.67 -65.86 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168187804.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.780 kcal (2) G-P(sol) polarization free energy of solvation -69.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds