Wall clock time and date at job start Mon Mar 30 2020 06:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35705 * 120.90853 * 2 1 4 4 C 1.41174 * 119.78886 * 179.69550 * 3 2 1 5 5 O 1.21778 * 119.15296 * 180.32450 * 4 3 2 6 6 O 1.34162 * 121.69452 * 0.61935 * 4 3 2 7 7 C 1.35073 * 121.49882 * 359.68347 * 6 4 3 8 8 C 1.38971 * 120.63791 * 180.02562 * 7 6 4 9 9 C 1.37751 * 120.06890 * 179.97438 * 8 7 6 10 10 C 1.39373 * 120.60159 * 359.97438 * 9 8 7 11 11 O 1.35792 * 119.89605 * 180.02562 * 10 9 8 12 12 C 1.34821 * 116.99904 * 354.44194 * 11 10 9 13 13 H 1.07996 * 120.00069 * 5.05573 * 12 11 10 14 14 C 1.38646 * 119.99544 * 185.05776 * 12 11 10 15 15 N 1.31567 * 119.99795 * 180.02562 * 14 12 11 16 16 Si 1.86796 * 120.00194 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.47017 * 90.00308 * 16 14 12 18 18 H 1.48506 * 109.47251 * 209.99861 * 16 14 12 19 19 H 1.48498 * 109.47607 * 330.00206 * 16 14 12 20 20 C 1.38286 * 120.20571 * 359.97345 * 10 9 8 21 21 C 1.39770 * 119.55263 * 0.07128 * 20 10 9 22 22 H 1.09001 * 109.46905 * 269.72330 * 1 2 3 23 23 H 1.08998 * 109.47167 * 149.72077 * 1 2 3 24 24 H 1.09005 * 109.46727 * 29.71816 * 1 2 3 25 25 H 1.07997 * 120.10192 * 359.97438 * 3 2 1 26 26 H 1.08004 * 119.96405 * 359.97424 * 8 7 6 27 27 H 1.08002 * 119.69806 * 179.97438 * 9 8 7 28 28 H 0.96997 * 120.00533 * 180.02562 * 15 14 12 29 29 H 1.07996 * 120.22076 * 180.02562 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2041 1.1643 0.0000 4 6 3.6156 1.1368 0.0065 5 8 4.2294 2.1885 0.0125 6 8 4.2980 -0.0183 0.0004 7 6 3.6655 -1.2117 -0.0059 8 6 4.3903 -2.3974 -0.0116 9 6 3.7332 -3.6081 -0.0174 10 6 2.3404 -3.6594 -0.0172 11 8 1.7073 -4.8607 -0.0225 12 6 2.4797 -5.9590 -0.1441 13 1 3.5555 -5.8647 -0.1496 14 6 1.8927 -7.2095 -0.2623 15 7 2.6464 -8.2814 -0.3805 16 14 0.0319 -7.3726 -0.2521 17 1 -0.4811 -7.2750 -1.6423 18 1 -0.3466 -8.6881 0.3239 19 1 -0.5560 -6.2847 0.5700 20 6 1.6012 -2.4907 -0.0105 21 6 2.2602 -1.2581 -0.0054 22 1 -0.3633 -0.0050 1.0277 23 1 -0.3633 -0.8874 -0.5182 24 1 -0.3633 0.8926 -0.5095 25 1 1.6807 2.1090 -0.0004 26 1 5.4700 -2.3697 -0.0114 27 1 4.3024 -4.5259 -0.0223 28 1 2.2359 -9.1563 -0.4635 29 1 0.5219 -2.5301 -0.0098 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000196180573.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:55 Heat of formation + Delta-G solvation = -59.517028 kcal Electronic energy + Delta-G solvation = -16860.905773 eV Core-core repulsion = 13908.686113 eV Total energy + Delta-G solvation = -2952.219661 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.072 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.46742 -39.24195 -37.65657 -36.36731 -34.96905 -32.59389 -30.33361 -28.87785 -28.75712 -25.66746 -23.36057 -23.05444 -21.60368 -19.40867 -18.42914 -17.63103 -16.77812 -16.38966 -16.30710 -15.07004 -14.69828 -14.19382 -14.11429 -13.71827 -13.58195 -13.46786 -13.14049 -12.79187 -12.60733 -12.40543 -12.19116 -11.76651 -11.33684 -11.16272 -10.90176 -10.41836 -10.06460 -9.88514 -9.64262 -9.04054 -8.38097 -7.52056 -6.62223 -4.29957 0.44782 1.59126 1.90735 2.84551 3.05942 3.12025 3.16591 3.25335 4.05559 4.09706 4.25611 4.38587 4.53820 4.78627 4.87818 5.16442 5.25984 5.38662 5.53445 5.60781 5.63760 5.70912 5.97181 6.08684 6.27737 6.39014 6.45912 6.76833 7.00177 7.46170 7.53247 7.75320 7.83831 8.70807 9.26533 10.44431 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.039431 B = 0.005850 C = 0.005111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.935664 B = 4785.056682 C = 5476.602751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.040 3.960 3 C -0.271 4.271 4 C 0.508 3.492 5 O -0.492 6.492 6 O -0.270 6.270 7 C 0.056 3.944 8 C -0.085 4.085 9 C -0.159 4.159 10 C 0.142 3.858 11 O -0.206 6.206 12 C -0.397 4.397 13 H 0.109 0.891 14 C 0.067 3.933 15 N -0.870 5.870 16 Si 0.906 3.094 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.258 1.258 20 C -0.143 4.143 21 C -0.109 4.109 22 H 0.089 0.911 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.155 0.845 26 H 0.135 0.865 27 H 0.152 0.848 28 H 0.283 0.717 29 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.664 10.310 0.621 11.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.039 3.961 3 C -0.290 4.290 4 C 0.359 3.641 5 O -0.383 6.383 6 O -0.182 6.182 7 C 0.013 3.987 8 C -0.104 4.104 9 C -0.178 4.178 10 C 0.089 3.911 11 O -0.111 6.111 12 C -0.472 4.472 13 H 0.126 0.874 14 C -0.138 4.138 15 N -0.506 5.506 16 Si 0.732 3.268 17 H -0.197 1.197 18 H -0.206 1.206 19 H -0.182 1.182 20 C -0.162 4.162 21 C -0.109 4.109 22 H 0.107 0.893 23 H 0.102 0.898 24 H 0.097 0.903 25 H 0.173 0.827 26 H 0.153 0.847 27 H 0.169 0.831 28 H 0.093 0.907 29 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.406 10.456 0.618 11.364 hybrid contribution -0.699 -0.287 -0.021 0.756 sum -5.105 10.169 0.597 11.395 Atomic orbital electron populations 1.21010 0.89477 1.04195 1.03763 1.21585 0.96729 0.91300 0.86485 1.22309 0.93303 0.99866 1.13528 1.19099 0.88120 0.81506 0.75370 1.90915 1.72280 1.26267 1.48873 1.83433 1.43134 1.13708 1.77893 1.18741 0.89690 0.82830 1.07480 1.20233 1.00028 0.88518 1.01595 1.21432 0.94406 0.98091 1.03882 1.18950 0.90706 0.86418 0.95029 1.83600 1.36315 1.11527 1.79645 1.20771 0.91997 0.82125 1.52302 0.87368 1.24486 1.00520 0.93617 0.95153 1.69635 1.36445 0.98669 1.45884 0.86165 0.83180 0.78164 0.79336 1.19695 1.20568 1.18238 1.20062 0.99673 0.88240 1.08246 1.18515 0.91429 0.93132 1.07870 0.89306 0.89762 0.90259 0.82744 0.84743 0.83051 0.90688 0.84698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.19 9.64 36.01 0.35 -0.85 15 2 C 0.04 0.53 6.08 -102.14 -0.62 -0.09 15 3 C -0.27 -3.73 9.62 -39.37 -0.38 -4.10 15 4 C 0.51 8.76 7.89 31.85 0.25 9.02 15 5 O -0.49 -9.63 17.91 -19.59 -0.35 -9.98 15 6 O -0.27 -4.83 9.81 -20.78 -0.20 -5.03 15 7 C 0.06 0.98 6.76 -38.42 -0.26 0.72 15 8 C -0.09 -1.43 9.99 -39.49 -0.39 -1.83 15 9 C -0.16 -2.98 9.14 -39.34 -0.36 -3.34 15 10 C 0.14 2.85 6.64 -39.14 -0.26 2.59 15 11 O -0.21 -4.82 8.58 -0.06 0.00 -4.82 15 12 C -0.40 -10.11 9.94 30.88 0.31 -9.80 15 13 H 0.11 2.78 5.41 -52.49 -0.28 2.50 15 14 C 0.07 1.74 5.49 -17.51 -0.10 1.64 15 15 N -0.87 -23.40 13.96 55.48 0.77 -22.62 15 16 Si 0.91 19.85 28.62 -169.99 -4.86 14.98 15 17 H -0.27 -5.86 7.11 56.52 0.40 -5.46 15 18 H -0.28 -5.97 7.11 56.52 0.40 -5.57 15 19 H -0.26 -5.61 7.11 56.52 0.40 -5.21 15 20 C -0.14 -2.43 9.35 -38.99 -0.36 -2.80 15 21 C -0.11 -1.75 5.87 -105.04 -0.62 -2.37 15 22 H 0.09 0.72 8.14 -51.93 -0.42 0.30 15 23 H 0.08 0.77 6.63 -51.93 -0.34 0.43 15 24 H 0.08 0.58 8.10 -51.93 -0.42 0.16 15 25 H 0.15 1.72 8.06 -52.49 -0.42 1.30 15 26 H 0.13 1.95 8.06 -52.48 -0.42 1.53 15 27 H 0.15 2.90 5.60 -52.49 -0.29 2.60 15 28 H 0.28 7.02 8.31 -40.82 -0.34 6.68 15 29 H 0.14 2.00 6.53 -52.49 -0.34 1.66 15 LS Contribution 261.47 15.07 3.94 3.94 Total: -1.00 -28.59 261.47 -5.24 -33.83 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -2.09 Total: 0.92 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -2.45 Total: -11.22 kcal Atomic # 7 Polarization: -23.40 SS G_CDS: 0.77 Total: -22.62 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.56 Total: -19.83 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -4.86 Total: 14.98 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.59 -5.24 -33.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000196180573.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.684 kcal (2) G-P(sol) polarization free energy of solvation -28.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds