Wall clock time and date at job start Mon Mar 30 2020 06:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35705 * 120.90853 * 2 1 4 4 C 1.41174 * 119.78886 * 179.69550 * 3 2 1 5 5 O 1.21778 * 119.15296 * 180.32450 * 4 3 2 6 6 O 1.34162 * 121.69452 * 0.61935 * 4 3 2 7 7 C 1.35073 * 121.49882 * 359.68347 * 6 4 3 8 8 C 1.38971 * 120.63791 * 180.02562 * 7 6 4 9 9 C 1.37751 * 120.06890 * 179.97438 * 8 7 6 10 10 C 1.39373 * 120.60159 * 359.97438 * 9 8 7 11 11 O 1.35792 * 119.89605 * 180.02562 * 10 9 8 12 12 C 1.34821 * 116.99904 * 354.44194 * 11 10 9 13 13 H 1.07996 * 120.00069 * 5.05573 * 12 11 10 14 14 C 1.38646 * 119.99544 * 185.05776 * 12 11 10 15 15 N 1.31567 * 119.99795 * 180.02562 * 14 12 11 16 16 Si 1.86796 * 120.00194 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.47017 * 90.00308 * 16 14 12 18 18 H 1.48506 * 109.47251 * 209.99861 * 16 14 12 19 19 H 1.48498 * 109.47607 * 330.00206 * 16 14 12 20 20 C 1.38286 * 120.20571 * 359.97345 * 10 9 8 21 21 C 1.39770 * 119.55263 * 0.07128 * 20 10 9 22 22 H 1.09001 * 109.46905 * 269.72330 * 1 2 3 23 23 H 1.08998 * 109.47167 * 149.72077 * 1 2 3 24 24 H 1.09005 * 109.46727 * 29.71816 * 1 2 3 25 25 H 1.07997 * 120.10192 * 359.97438 * 3 2 1 26 26 H 1.08004 * 119.96405 * 359.97424 * 8 7 6 27 27 H 1.08002 * 119.69806 * 179.97438 * 9 8 7 28 28 H 0.96997 * 120.00533 * 180.02562 * 15 14 12 29 29 H 1.07996 * 120.22076 * 180.02562 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2041 1.1643 0.0000 4 6 3.6156 1.1368 0.0065 5 8 4.2294 2.1885 0.0125 6 8 4.2980 -0.0183 0.0004 7 6 3.6655 -1.2117 -0.0059 8 6 4.3903 -2.3974 -0.0116 9 6 3.7332 -3.6081 -0.0174 10 6 2.3404 -3.6594 -0.0172 11 8 1.7073 -4.8607 -0.0225 12 6 2.4797 -5.9590 -0.1441 13 1 3.5555 -5.8647 -0.1496 14 6 1.8927 -7.2095 -0.2623 15 7 2.6464 -8.2814 -0.3805 16 14 0.0319 -7.3726 -0.2521 17 1 -0.4811 -7.2750 -1.6423 18 1 -0.3466 -8.6881 0.3239 19 1 -0.5560 -6.2847 0.5700 20 6 1.6012 -2.4907 -0.0105 21 6 2.2602 -1.2581 -0.0054 22 1 -0.3633 -0.0050 1.0277 23 1 -0.3633 -0.8874 -0.5182 24 1 -0.3633 0.8926 -0.5095 25 1 1.6807 2.1090 -0.0004 26 1 5.4700 -2.3697 -0.0114 27 1 4.3024 -4.5259 -0.0223 28 1 2.2359 -9.1563 -0.4635 29 1 0.5219 -2.5301 -0.0098 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000196180573.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:54 Heat of formation + Delta-G solvation = -75.343477 kcal Electronic energy + Delta-G solvation = -16861.592060 eV Core-core repulsion = 13908.686113 eV Total energy + Delta-G solvation = -2952.905947 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.072 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.84399 -40.79698 -39.14364 -37.74344 -36.24701 -34.45239 -31.73856 -30.34190 -29.69437 -27.42646 -24.78782 -24.45752 -22.84881 -20.96723 -19.85818 -19.30365 -18.20483 -17.79083 -17.73768 -16.53104 -16.29413 -15.81466 -15.59657 -15.04951 -14.64435 -14.50245 -14.38710 -14.25703 -14.21720 -13.87349 -13.58976 -12.92743 -12.84507 -12.56377 -12.35094 -12.03408 -11.61746 -11.21732 -11.13533 -10.84850 -9.68784 -9.06300 -8.50327 -6.23991 -0.79537 0.14500 0.55842 1.37562 1.39265 1.45970 1.55978 1.82060 2.29156 2.64859 2.81029 3.01304 3.18753 3.31833 3.54367 3.93490 4.16544 4.16636 4.35869 4.41751 4.72635 4.76711 4.78701 4.95948 4.98277 5.12251 5.28494 5.33857 5.47836 5.63009 5.96424 6.16350 6.46299 6.82667 7.48441 8.60150 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.039431 B = 0.005850 C = 0.005111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.935664 B = 4785.056682 C = 5476.602751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.054 3.946 3 C -0.267 4.267 4 C 0.500 3.500 5 O -0.522 6.522 6 O -0.284 6.284 7 C 0.057 3.943 8 C -0.084 4.084 9 C -0.167 4.167 10 C 0.114 3.886 11 O -0.228 6.228 12 C -0.404 4.404 13 H 0.089 0.911 14 C 0.014 3.986 15 N -0.919 5.919 16 Si 0.968 3.032 17 H -0.266 1.266 18 H -0.274 1.274 19 H -0.254 1.254 20 C -0.122 4.122 21 C -0.111 4.111 22 H 0.109 0.891 23 H 0.088 0.912 24 H 0.107 0.893 25 H 0.187 0.813 26 H 0.155 0.845 27 H 0.139 0.861 28 H 0.286 0.714 29 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.091 12.620 0.715 14.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.053 3.947 3 C -0.286 4.286 4 C 0.354 3.646 5 O -0.416 6.416 6 O -0.197 6.197 7 C 0.013 3.987 8 C -0.102 4.102 9 C -0.186 4.186 10 C 0.064 3.936 11 O -0.135 6.135 12 C -0.479 4.479 13 H 0.106 0.894 14 C -0.186 4.186 15 N -0.558 5.558 16 Si 0.790 3.210 17 H -0.191 1.191 18 H -0.199 1.199 19 H -0.177 1.177 20 C -0.141 4.141 21 C -0.112 4.112 22 H 0.127 0.873 23 H 0.107 0.893 24 H 0.125 0.875 25 H 0.205 0.795 26 H 0.172 0.828 27 H 0.156 0.844 28 H 0.095 0.905 29 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -6.825 12.813 0.715 14.535 hybrid contribution 0.203 -0.663 -0.039 0.694 sum -6.622 12.150 0.675 13.854 Atomic orbital electron populations 1.21194 0.85930 1.05868 1.05423 1.21883 0.98812 0.89228 0.84769 1.22453 0.91135 1.01566 1.13452 1.19729 0.89512 0.80731 0.74676 1.90902 1.73129 1.27095 1.50441 1.83396 1.44154 1.14132 1.77990 1.18974 0.90564 0.82715 1.06421 1.20375 1.01165 0.87845 1.00834 1.21395 0.94337 0.98370 1.04487 1.19418 0.91539 0.86497 0.96139 1.83552 1.35999 1.11710 1.82234 1.20726 0.91575 0.83323 1.52317 0.89388 1.25274 1.04888 0.93268 0.95135 1.69725 1.38209 0.99238 1.48662 0.85241 0.77906 0.78308 0.79515 1.19090 1.19872 1.17738 1.20371 1.01018 0.87152 1.05571 1.18840 0.91211 0.94392 1.06779 0.87300 0.89288 0.87485 0.79543 0.82777 0.84392 0.90475 0.81834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 9.64 71.24 0.69 -0.97 15 2 C 0.05 1.18 6.08 -18.26 -0.11 1.07 15 3 C -0.27 -6.30 9.62 22.40 0.22 -6.08 15 4 C 0.50 16.20 7.89 68.54 0.54 16.75 15 5 O -0.52 -19.73 17.91 19.03 0.34 -19.39 15 6 O -0.28 -9.77 9.81 14.75 0.14 -9.62 15 7 C 0.06 1.87 6.76 23.02 0.16 2.03 15 8 C -0.08 -2.78 9.99 22.33 0.22 -2.55 15 9 C -0.17 -6.35 9.14 22.43 0.21 -6.14 15 10 C 0.11 4.53 6.64 22.55 0.15 4.68 15 11 O -0.23 -10.69 8.58 -23.12 -0.20 -10.89 15 12 C -0.40 -21.26 9.94 67.92 0.68 -20.58 15 13 H 0.09 4.81 5.41 -2.91 -0.02 4.80 15 14 C 0.01 0.74 5.49 84.83 0.47 1.20 15 15 N -0.92 -51.25 13.96 21.61 0.30 -50.95 15 16 Si 0.97 40.99 28.62 68.60 1.96 42.96 15 17 H -0.27 -10.86 7.11 99.48 0.71 -10.16 15 18 H -0.27 -11.11 7.11 99.48 0.71 -10.40 15 19 H -0.25 -10.38 7.11 99.48 0.71 -9.67 15 20 C -0.12 -3.84 9.35 22.65 0.21 -3.63 15 21 C -0.11 -3.26 5.87 -20.14 -0.12 -3.38 15 22 H 0.11 1.10 8.14 -2.39 -0.02 1.08 15 23 H 0.09 1.13 6.63 -2.39 -0.02 1.12 15 24 H 0.11 0.88 8.10 -2.38 -0.02 0.86 15 25 H 0.19 3.21 8.06 -2.91 -0.02 3.19 15 26 H 0.15 4.38 8.06 -2.91 -0.02 4.36 15 27 H 0.14 5.61 5.60 -2.91 -0.02 5.59 15 28 H 0.29 14.67 8.31 -92.71 -0.77 13.90 15 29 H 0.16 4.18 6.53 -2.91 -0.02 4.16 15 Total: -1.00 -63.72 261.47 7.05 -56.67 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: 1.20 Total: 8.83 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: 3.30 Total: -17.61 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: 0.30 Total: -50.95 kcal Atomic # 8 Polarization: -40.18 SS G_CDS: 0.29 Total: -39.90 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 1.96 Total: 42.96 kcal Total: -63.72 7.05 -56.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000196180573.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.674 kcal (2) G-P(sol) polarization free energy of solvation -63.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds