Wall clock time and date at job start Mon Mar 30 2020 05:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30812 * 1 3 3 Si 1.86797 * 120.00051 * 2 1 4 4 H 1.48501 * 109.47315 * 239.99820 * 3 2 1 5 5 H 1.48504 * 109.47330 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47268 * 119.99710 * 3 2 1 7 7 C 1.39968 * 120.00124 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00146 * 198.04688 * 7 2 1 9 9 C 1.41161 * 119.99997 * 18.04482 * 7 2 1 10 10 C 1.40040 * 119.87378 * 24.97824 * 9 7 2 11 11 C 1.39913 * 119.34481 * 180.02562 * 10 9 7 12 12 C 1.40849 * 121.03211 * 179.97438 * 11 10 9 13 13 C 1.36150 * 119.63739 * 180.02562 * 12 11 10 14 14 C 1.39300 * 120.92061 * 359.97438 * 13 12 11 15 15 C 1.36390 * 121.03391 * 0.02562 * 14 13 12 16 16 C 1.40203 * 119.79075 * 359.97438 * 15 14 13 17 17 C 1.41065 * 120.91511 * 179.97438 * 16 15 14 18 18 C 1.50700 * 119.88975 * 0.02625 * 17 16 15 19 19 Cl 1.80303 * 109.47187 * 90.00065 * 18 17 16 20 20 C 1.35319 * 120.21482 * 180.02562 * 17 16 15 21 21 H 0.97003 * 120.00308 * 0.02562 * 1 2 3 22 22 H 1.08006 * 120.32935 * 359.97438 * 10 9 7 23 23 H 1.08006 * 120.18362 * 0.07205 * 12 11 10 24 24 H 1.08004 * 119.54581 * 180.02562 * 13 12 11 25 25 H 1.07998 * 119.48065 * 180.27840 * 14 13 12 26 26 H 1.08003 * 120.10777 * 180.02562 * 15 14 13 27 27 H 1.09000 * 109.46863 * 209.99697 * 18 17 16 28 28 H 1.08998 * 109.47498 * 330.00007 * 18 17 16 29 29 H 1.08001 * 119.62236 * 179.97438 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2771 2.7465 -0.0006 6 1 3.0959 1.6964 1.2126 7 6 2.0080 -1.2121 0.0005 8 1 3.0481 -1.2350 0.2903 9 6 1.3543 -2.4048 -0.3776 10 6 0.2390 -2.3510 -1.2228 11 6 -0.4008 -3.5399 -1.5901 12 6 -1.5256 -3.5272 -2.4378 13 6 -2.1266 -4.7009 -2.7767 14 6 -1.6443 -5.9166 -2.2971 15 6 -0.5576 -5.9666 -1.4745 16 6 0.0895 -4.7799 -1.1021 17 6 1.2150 -4.8041 -0.2521 18 6 1.7360 -6.1194 0.2670 19 17 2.9634 -6.7745 -0.8799 20 6 1.8284 -3.6500 0.0987 21 1 -0.4851 0.8400 -0.0004 22 1 -0.1243 -1.4013 -1.5868 23 1 -1.9088 -2.5915 -2.8176 24 1 -2.9887 -4.6895 -3.4272 25 1 -2.1363 -6.8341 -2.5844 26 1 -0.1961 -6.9175 -1.1116 27 1 2.1956 -5.9682 1.2437 28 1 0.9112 -6.8261 0.3590 29 1 2.6891 -3.6796 0.7503 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000201099147.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:28 Heat of formation + Delta-G solvation = 9.534157 kcal Electronic energy + Delta-G solvation = -14847.152666 eV Core-core repulsion = 12338.636454 eV Total energy + Delta-G solvation = -2508.516212 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.051 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.13179 -35.91328 -35.46361 -33.79446 -31.90826 -29.65282 -28.96060 -26.10585 -25.10853 -22.12286 -21.40281 -19.83934 -17.51663 -16.16529 -16.08630 -15.04297 -14.60908 -13.94635 -13.85424 -13.44779 -12.91603 -12.59629 -12.47286 -12.19632 -11.93253 -11.58702 -11.23921 -10.96926 -10.83381 -10.54945 -10.37558 -10.06111 -9.95850 -9.62923 -9.50396 -9.19304 -8.69751 -7.52506 -6.92549 -6.82454 -4.45469 1.55951 2.24691 2.61862 2.94402 2.99492 3.02939 3.51639 3.81205 3.99524 4.75466 5.25807 5.32746 5.51641 5.68721 5.73614 5.83380 5.91376 6.24505 6.32881 6.56803 6.66871 6.86156 6.95680 6.97084 7.20039 7.34650 7.41569 7.48699 7.62407 7.85512 8.00671 8.08811 8.45138 8.67451 8.73729 10.01636 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.021705 B = 0.008091 C = 0.006135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.732024 B = 3459.603629 C = 4563.177486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.074 3.926 3 Si 0.910 3.090 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.449 4.449 8 H 0.081 0.919 9 C 0.097 3.903 10 C -0.193 4.193 11 C -0.007 4.007 12 C -0.131 4.131 13 C -0.123 4.123 14 C -0.183 4.183 15 C -0.085 4.085 16 C -0.115 4.115 17 C -0.101 4.101 18 C 0.022 3.978 19 Cl -0.199 7.199 20 C -0.124 4.124 21 H 0.284 0.716 22 H 0.124 0.876 23 H 0.109 0.891 24 H 0.101 0.899 25 H 0.100 0.900 26 H 0.104 0.896 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.147 -5.338 -0.226 5.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.477 4.477 8 H 0.099 0.901 9 C 0.095 3.905 10 C -0.213 4.213 11 C -0.007 4.007 12 C -0.149 4.149 13 C -0.141 4.141 14 C -0.202 4.202 15 C -0.103 4.103 16 C -0.116 4.116 17 C -0.101 4.101 18 C -0.040 4.040 19 Cl -0.172 7.172 20 C -0.144 4.144 21 H 0.095 0.905 22 H 0.142 0.858 23 H 0.127 0.873 24 H 0.119 0.881 25 H 0.118 0.882 26 H 0.122 0.878 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.039 -5.223 -0.272 5.230 hybrid contribution 0.303 0.766 0.011 0.824 sum 0.343 -4.456 -0.261 4.477 Atomic orbital electron populations 1.69806 1.07669 1.29729 1.33119 1.25935 0.94769 1.01499 0.92343 0.86329 0.80185 0.79944 0.80151 1.18632 1.20184 1.18875 1.19595 0.98185 0.91256 1.38710 0.90117 1.17517 0.92084 0.91437 0.89480 1.21329 1.01062 0.95747 1.03142 1.17977 0.94303 0.93086 0.95347 1.20927 0.96764 0.97214 1.00036 1.20500 0.99766 0.92986 1.00827 1.20334 0.99716 0.96811 1.03332 1.20750 0.95486 0.96464 0.97592 1.17443 0.98074 0.92855 1.03226 1.19048 0.97219 0.92780 1.01078 1.23143 0.92338 0.95711 0.92843 1.98698 1.62311 1.88157 1.68070 1.20936 1.00066 0.92516 1.00850 0.90465 0.85846 0.87305 0.88079 0.88183 0.87780 0.88975 0.88954 0.88002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.25 10.97 55.55 0.61 -18.64 15 2 C 0.07 1.76 5.12 -17.34 -0.09 1.68 15 3 Si 0.91 17.77 29.60 -169.99 -5.03 12.74 15 4 H -0.26 -5.12 7.11 56.52 0.40 -4.72 15 5 H -0.28 -5.29 7.11 56.52 0.40 -4.89 15 6 H -0.26 -5.08 7.11 56.52 0.40 -4.68 15 7 C -0.45 -11.20 9.02 -37.83 -0.34 -11.54 15 8 H 0.08 1.91 7.91 -52.49 -0.42 1.49 15 9 C 0.10 2.45 5.57 -106.87 -0.60 1.86 15 10 C -0.19 -4.88 8.44 -38.28 -0.32 -5.20 15 11 C -0.01 -0.16 5.74 -106.84 -0.61 -0.77 15 12 C -0.13 -2.76 9.77 -39.35 -0.38 -3.15 15 13 C -0.12 -2.30 9.95 -39.94 -0.40 -2.70 15 14 C -0.18 -3.36 9.95 -39.85 -0.40 -3.76 15 15 C -0.08 -1.64 9.26 -39.51 -0.37 -2.00 15 16 C -0.12 -2.52 5.75 -106.65 -0.61 -3.13 15 17 C -0.10 -2.08 5.25 -104.59 -0.55 -2.63 15 18 C 0.02 0.36 6.28 36.01 0.23 0.58 15 19 Cl -0.20 -3.31 29.13 -51.86 -1.51 -4.82 15 20 C -0.12 -2.80 9.28 -39.38 -0.37 -3.16 15 21 H 0.28 6.40 8.30 -40.82 -0.34 6.06 15 22 H 0.12 3.24 6.16 -52.48 -0.32 2.91 15 23 H 0.11 2.14 8.06 -52.48 -0.42 1.72 15 24 H 0.10 1.60 8.06 -52.48 -0.42 1.17 15 25 H 0.10 1.55 8.06 -52.49 -0.42 1.13 15 26 H 0.10 1.75 6.30 -52.48 -0.33 1.42 15 27 H 0.09 1.33 8.07 -51.93 -0.42 0.91 15 28 H 0.09 1.35 6.38 -51.93 -0.33 1.02 15 29 H 0.10 2.10 8.06 -52.49 -0.42 1.67 15 LS Contribution 265.76 15.07 4.00 4.00 Total: -1.00 -26.05 265.76 -9.38 -35.43 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -2.65 Total: 5.23 kcal Atomic # 6 Polarization: -29.13 SS G_CDS: -4.81 Total: -33.94 kcal Atomic # 7 Polarization: -19.25 SS G_CDS: 0.61 Total: -18.64 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.03 Total: 12.74 kcal Atomic # 17 Polarization: -3.31 SS G_CDS: -1.51 Total: -4.82 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -26.05 -9.38 -35.43 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000201099147.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.963 kcal (2) G-P(sol) polarization free energy of solvation -26.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds