Wall clock time and date at job start Mon Mar 30 2020 05:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30812 * 1 3 3 Si 1.86797 * 120.00051 * 2 1 4 4 H 1.48501 * 109.47315 * 239.99820 * 3 2 1 5 5 H 1.48504 * 109.47330 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47268 * 119.99710 * 3 2 1 7 7 C 1.39968 * 120.00124 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00146 * 198.04688 * 7 2 1 9 9 C 1.41161 * 119.99997 * 18.04482 * 7 2 1 10 10 C 1.40040 * 119.87378 * 24.97824 * 9 7 2 11 11 C 1.39913 * 119.34481 * 180.02562 * 10 9 7 12 12 C 1.40849 * 121.03211 * 179.97438 * 11 10 9 13 13 C 1.36150 * 119.63739 * 180.02562 * 12 11 10 14 14 C 1.39300 * 120.92061 * 359.97438 * 13 12 11 15 15 C 1.36390 * 121.03391 * 0.02562 * 14 13 12 16 16 C 1.40203 * 119.79075 * 359.97438 * 15 14 13 17 17 C 1.41065 * 120.91511 * 179.97438 * 16 15 14 18 18 C 1.50700 * 119.88975 * 0.02625 * 17 16 15 19 19 Cl 1.80303 * 109.47187 * 90.00065 * 18 17 16 20 20 C 1.35319 * 120.21482 * 180.02562 * 17 16 15 21 21 H 0.97003 * 120.00308 * 0.02562 * 1 2 3 22 22 H 1.08006 * 120.32935 * 359.97438 * 10 9 7 23 23 H 1.08006 * 120.18362 * 0.07205 * 12 11 10 24 24 H 1.08004 * 119.54581 * 180.02562 * 13 12 11 25 25 H 1.07998 * 119.48065 * 180.27840 * 14 13 12 26 26 H 1.08003 * 120.10777 * 180.02562 * 15 14 13 27 27 H 1.09000 * 109.46863 * 209.99697 * 18 17 16 28 28 H 1.08998 * 109.47498 * 330.00007 * 18 17 16 29 29 H 1.08001 * 119.62236 * 179.97438 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2771 2.7465 -0.0006 6 1 3.0959 1.6964 1.2126 7 6 2.0080 -1.2121 0.0005 8 1 3.0481 -1.2350 0.2903 9 6 1.3543 -2.4048 -0.3776 10 6 0.2390 -2.3510 -1.2228 11 6 -0.4008 -3.5399 -1.5901 12 6 -1.5256 -3.5272 -2.4378 13 6 -2.1266 -4.7009 -2.7767 14 6 -1.6443 -5.9166 -2.2971 15 6 -0.5576 -5.9666 -1.4745 16 6 0.0895 -4.7799 -1.1021 17 6 1.2150 -4.8041 -0.2521 18 6 1.7360 -6.1194 0.2670 19 17 2.9634 -6.7745 -0.8799 20 6 1.8284 -3.6500 0.0987 21 1 -0.4851 0.8400 -0.0004 22 1 -0.1243 -1.4013 -1.5868 23 1 -1.9088 -2.5915 -2.8176 24 1 -2.9887 -4.6895 -3.4272 25 1 -2.1363 -6.8341 -2.5844 26 1 -0.1961 -6.9175 -1.1116 27 1 2.1956 -5.9682 1.2437 28 1 0.9112 -6.8261 0.3590 29 1 2.6891 -3.6796 0.7503 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000201099147.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:28 Heat of formation + Delta-G solvation = -1.542035 kcal Electronic energy + Delta-G solvation = -14847.632966 eV Core-core repulsion = 12338.636454 eV Total energy + Delta-G solvation = -2508.996512 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.051 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.76993 -37.50337 -36.90626 -35.45114 -33.56586 -31.34810 -30.51736 -27.72570 -26.77026 -23.73332 -23.08170 -21.49481 -19.22471 -17.82432 -17.71492 -16.70046 -16.21157 -15.35185 -15.32695 -15.00098 -14.48880 -14.21748 -14.05369 -13.81373 -13.48280 -13.19884 -12.84257 -12.63882 -12.50560 -12.09959 -11.84638 -11.66264 -11.40395 -11.19555 -11.06766 -10.90609 -10.35554 -9.23405 -8.68474 -8.49858 -6.31849 -0.05458 0.59157 1.16140 1.35858 1.40852 1.49110 1.92574 2.17548 2.35142 3.03655 3.77285 3.79766 4.01271 4.18840 4.32539 4.42683 4.50269 4.68929 4.75140 4.92744 5.00479 5.18412 5.19941 5.35529 5.54006 5.70709 5.73919 5.87739 5.96039 6.08413 6.22324 6.44506 6.65006 6.85868 6.94776 8.27970 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.021705 B = 0.008091 C = 0.006135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.732024 B = 3459.603629 C = 4563.177486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.035 3.965 3 Si 0.980 3.020 4 H -0.262 1.262 5 H -0.269 1.269 6 H -0.256 1.256 7 C -0.487 4.487 8 H 0.082 0.918 9 C 0.071 3.929 10 C -0.225 4.225 11 C -0.031 4.031 12 C -0.159 4.159 13 C -0.110 4.110 14 C -0.175 4.175 15 C -0.088 4.088 16 C -0.133 4.133 17 C -0.091 4.091 18 C 0.025 3.975 19 Cl -0.196 7.196 20 C -0.148 4.148 21 H 0.289 0.711 22 H 0.099 0.901 23 H 0.108 0.892 24 H 0.137 0.863 25 H 0.141 0.859 26 H 0.135 0.865 27 H 0.113 0.887 28 H 0.117 0.883 29 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.222 -7.490 -0.443 7.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.181 4.181 3 Si 0.801 3.199 4 H -0.187 1.187 5 H -0.193 1.193 6 H -0.180 1.180 7 C -0.515 4.515 8 H 0.100 0.900 9 C 0.069 3.931 10 C -0.245 4.245 11 C -0.031 4.031 12 C -0.178 4.178 13 C -0.128 4.128 14 C -0.193 4.193 15 C -0.106 4.106 16 C -0.134 4.134 17 C -0.092 4.092 18 C -0.037 4.037 19 Cl -0.170 7.170 20 C -0.167 4.167 21 H 0.099 0.901 22 H 0.117 0.883 23 H 0.126 0.874 24 H 0.155 0.845 25 H 0.159 0.841 26 H 0.153 0.847 27 H 0.132 0.868 28 H 0.135 0.865 29 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.332 -7.395 -0.489 7.419 hybrid contribution 0.284 1.205 -0.017 1.238 sum -0.047 -6.190 -0.506 6.211 Atomic orbital electron populations 1.69884 1.09134 1.30713 1.34339 1.26763 0.95424 1.04571 0.91368 0.85272 0.78821 0.75648 0.80157 1.18672 1.19325 1.17976 1.19858 0.98528 0.92415 1.40743 0.90007 1.17879 0.92515 0.92909 0.89847 1.21221 1.02543 0.95721 1.05045 1.18300 0.95229 0.93374 0.96194 1.21073 0.97076 0.98643 1.00967 1.20947 0.99872 0.92192 0.99783 1.20870 0.98833 0.98109 1.01518 1.21091 0.95506 0.96531 0.97485 1.17824 0.98775 0.93280 1.03490 1.19430 0.96109 0.94216 0.99399 1.23227 0.93259 0.93855 0.93310 1.98703 1.62241 1.87825 1.68210 1.21067 1.01143 0.92434 1.02053 0.90056 0.88279 0.87401 0.84533 0.84086 0.84730 0.86827 0.86454 0.86892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.56 10.97 21.83 0.24 -42.32 15 2 C 0.03 1.73 5.12 85.26 0.44 2.16 15 3 Si 0.98 37.60 29.60 68.60 2.03 39.63 15 4 H -0.26 -9.96 7.11 99.48 0.71 -9.25 15 5 H -0.27 -9.82 7.11 99.48 0.71 -9.11 15 6 H -0.26 -9.36 7.11 99.48 0.71 -8.66 15 7 C -0.49 -25.59 9.02 23.41 0.21 -25.38 15 8 H 0.08 4.07 7.91 -2.91 -0.02 4.05 15 9 C 0.07 3.76 5.57 -21.32 -0.12 3.64 15 10 C -0.22 -12.08 8.44 23.11 0.20 -11.89 15 11 C -0.03 -1.48 5.74 -21.30 -0.12 -1.61 15 12 C -0.16 -6.72 9.77 22.42 0.22 -6.50 15 13 C -0.11 -3.81 9.95 22.04 0.22 -3.59 15 14 C -0.18 -5.65 9.95 22.09 0.22 -5.43 15 15 C -0.09 -3.10 9.26 22.32 0.21 -2.89 15 16 C -0.13 -5.69 5.75 -21.18 -0.12 -5.81 15 17 C -0.09 -3.68 5.25 -19.84 -0.10 -3.79 15 18 C 0.03 0.75 6.28 71.24 0.45 1.20 15 19 Cl -0.20 -6.04 29.13 -2.72 -0.08 -6.12 15 20 C -0.15 -6.79 9.28 22.40 0.21 -6.58 15 21 H 0.29 13.68 8.30 -92.71 -0.77 12.91 15 22 H 0.10 5.64 6.16 -2.91 -0.02 5.63 15 23 H 0.11 4.41 8.06 -2.91 -0.02 4.39 15 24 H 0.14 3.73 8.06 -2.91 -0.02 3.71 15 25 H 0.14 3.46 8.06 -2.91 -0.02 3.44 15 26 H 0.14 3.86 6.30 -2.91 -0.02 3.84 15 27 H 0.11 2.94 8.07 -2.39 -0.02 2.92 15 28 H 0.12 2.93 6.38 -2.39 -0.02 2.92 15 29 H 0.11 4.74 8.06 -2.91 -0.02 4.72 15 Total: -1.00 -59.04 265.76 5.25 -53.79 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 1.16 Total: 21.49 kcal Atomic # 6 Polarization: -68.36 SS G_CDS: 1.90 Total: -66.47 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: 0.24 Total: -42.32 kcal Atomic # 14 Polarization: 37.60 SS G_CDS: 2.03 Total: 39.63 kcal Atomic # 17 Polarization: -6.04 SS G_CDS: -0.08 Total: -6.12 kcal Total: -59.04 5.25 -53.79 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000201099147.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.248 kcal (2) G-P(sol) polarization free energy of solvation -59.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds