Wall clock time and date at job start Mon Mar 30 2020 05:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86803 * 120.00260 * 2 1 4 4 H 1.48498 * 109.46956 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.46861 * 240.00483 * 3 2 1 6 6 H 1.48495 * 109.46975 * 120.00293 * 3 2 1 7 7 C 1.40159 * 119.99494 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99296 * 154.93393 * 7 2 1 9 9 C 1.40445 * 120.00064 * 334.93096 * 7 2 1 10 10 C 1.40523 * 120.71566 * 333.68803 * 9 7 2 11 11 C 1.38154 * 120.42342 * 179.97438 * 10 9 7 12 12 C 1.37673 * 121.79776 * 0.02562 * 11 10 9 13 13 C 1.50696 * 119.60686 * 179.97438 * 12 11 10 14 14 Cl 1.80299 * 109.47221 * 270.00083 * 13 12 11 15 15 C 1.40651 * 120.79036 * 0.02632 * 12 11 10 16 16 C 1.40514 * 121.16337 * 179.97438 * 15 12 11 17 17 C 1.36338 * 119.76710 * 180.02562 * 16 15 12 18 18 C 1.39080 * 120.93438 * 0.02562 * 17 16 15 19 19 C 1.37688 * 120.71186 * 359.97438 * 18 17 16 20 20 C 1.39535 * 119.55967 * 359.66064 * 19 18 17 21 21 H 0.96992 * 120.00719 * 174.52297 * 1 2 3 22 22 H 1.08000 * 119.79546 * 0.02562 * 10 9 7 23 23 H 1.08001 * 119.10576 * 180.02562 * 11 10 9 24 24 H 1.09001 * 109.47009 * 30.00213 * 13 12 11 25 25 H 1.09005 * 109.47072 * 149.99960 * 13 12 11 26 26 H 1.08002 * 120.11216 * 0.03421 * 16 15 12 27 27 H 1.07994 * 119.53270 * 179.97438 * 17 16 15 28 28 H 1.07997 * 119.64161 * 179.97438 * 18 17 16 29 29 H 1.07998 * 120.22126 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 1.2765 2.7464 -0.0006 5 1 3.0951 1.6963 -1.2126 6 1 3.0952 1.6963 1.2124 7 6 2.0081 -1.2139 -0.0005 8 1 3.0117 -1.2577 -0.3968 9 6 1.4050 -2.3731 0.5143 10 6 0.3996 -2.2853 1.4922 11 6 -0.1899 -3.4295 1.9941 12 6 0.1785 -4.6842 1.5633 13 6 -0.4971 -5.8992 2.1449 14 17 0.4144 -6.4561 3.5975 15 6 1.1786 -4.8456 0.5876 16 6 1.5610 -6.1224 0.1426 17 6 2.5342 -6.2459 -0.8041 18 6 3.1580 -5.1237 -1.3388 19 6 2.8060 -3.8588 -0.9240 20 6 1.8076 -3.7029 0.0383 21 1 -0.4851 -0.8361 -0.0802 22 1 0.0852 -1.3173 1.8532 23 1 -0.9608 -3.3374 2.7448 24 1 -1.5176 -5.6451 2.4317 25 1 -0.5164 -6.6954 1.4007 26 1 1.0855 -7.0028 0.5492 27 1 2.8255 -7.2290 -1.1430 28 1 3.9267 -5.2457 -2.0875 29 1 3.2952 -2.9929 -1.3448 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000201099518.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:46 Heat of formation + Delta-G solvation = -10.738665 kcal Electronic energy + Delta-G solvation = -14940.730221 eV Core-core repulsion = 12431.334913 eV Total energy + Delta-G solvation = -2509.395307 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.051 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.70136 -37.45604 -36.89591 -35.73262 -33.37827 -30.87470 -30.30689 -28.90199 -25.60089 -23.88983 -23.37340 -21.72345 -19.63379 -18.11651 -17.55752 -16.59668 -15.81003 -15.55342 -15.27225 -15.17874 -14.61818 -14.41429 -14.03474 -13.76303 -13.39917 -13.13893 -13.11196 -12.71262 -12.18247 -11.98751 -11.81207 -11.53357 -11.44758 -11.13617 -11.07428 -10.89116 -10.31310 -9.52863 -9.23176 -8.73286 -6.49265 -0.03196 0.53105 1.11315 1.46142 1.50365 1.77652 1.91412 2.23696 2.40420 2.80499 3.64414 3.96027 4.07492 4.20767 4.28974 4.36450 4.43068 4.56616 4.68932 4.80455 4.97003 5.01177 5.25411 5.37927 5.47938 5.56910 5.68218 5.73160 5.83107 5.98967 6.09676 6.20909 6.41978 6.62624 6.74530 7.79641 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.024505 B = 0.007833 C = 0.006317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.347401 B = 3573.722138 C = 4431.113063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.003 3.997 3 Si 1.117 2.883 4 H -0.269 1.269 5 H -0.250 1.250 6 H -0.263 1.263 7 C -0.493 4.493 8 H 0.091 0.909 9 C 0.088 3.912 10 C -0.312 4.312 11 C -0.020 4.020 12 C -0.281 4.281 13 C 0.054 3.946 14 Cl -0.227 7.227 15 C 0.009 3.991 16 C -0.162 4.162 17 C -0.102 4.102 18 C -0.179 4.179 19 C -0.088 4.088 20 C -0.148 4.148 21 H 0.292 0.708 22 H 0.086 0.914 23 H 0.105 0.895 24 H 0.099 0.901 25 H 0.101 0.899 26 H 0.131 0.869 27 H 0.145 0.855 28 H 0.138 0.862 29 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.921 -5.685 -1.011 6.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.218 4.218 3 Si 0.932 3.068 4 H -0.194 1.194 5 H -0.174 1.174 6 H -0.187 1.187 7 C -0.519 4.519 8 H 0.109 0.891 9 C 0.084 3.916 10 C -0.332 4.332 11 C -0.039 4.039 12 C -0.282 4.282 13 C -0.007 4.007 14 Cl -0.201 7.201 15 C 0.009 3.991 16 C -0.180 4.180 17 C -0.120 4.120 18 C -0.197 4.197 19 C -0.106 4.106 20 C -0.148 4.148 21 H 0.105 0.895 22 H 0.105 0.895 23 H 0.124 0.876 24 H 0.117 0.883 25 H 0.120 0.880 26 H 0.149 0.851 27 H 0.162 0.838 28 H 0.156 0.844 29 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.693 -4.116 -0.860 4.533 hybrid contribution -0.097 -1.476 0.203 1.493 sum 1.595 -5.593 -0.657 5.853 Atomic orbital electron populations 1.70491 1.09118 1.34236 1.26345 1.28714 0.95576 1.07649 0.89812 0.83008 0.74890 0.69314 0.79547 1.19353 1.17414 1.18730 1.20995 1.03085 0.94548 1.33228 0.89133 1.19049 0.91038 0.91770 0.89722 1.20723 1.09021 0.96917 1.06491 1.20510 0.95834 0.92185 0.95384 1.19027 1.07754 0.93513 1.07939 1.22865 0.95011 0.96026 0.86845 1.98689 1.80527 1.91475 1.49416 1.17883 0.94130 0.92817 0.94269 1.21084 1.00880 0.95682 1.00374 1.21025 0.95677 0.99222 0.96037 1.21154 1.03261 0.91793 1.03483 1.21224 0.95458 0.97963 0.95927 1.19452 1.01361 0.93068 1.00940 0.89516 0.89537 0.87646 0.88295 0.88035 0.85113 0.83750 0.84380 0.86649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -39.66 12.36 21.87 0.27 -39.39 15 2 C 0.00 0.15 4.95 85.32 0.42 0.57 15 3 Si 1.12 39.38 30.00 68.60 2.06 41.44 15 4 H -0.27 -9.39 7.11 99.48 0.71 -8.69 15 5 H -0.25 -7.93 7.11 99.48 0.71 -7.22 15 6 H -0.26 -8.89 7.11 99.48 0.71 -8.19 15 7 C -0.49 -24.67 8.41 23.27 0.20 -24.47 15 8 H 0.09 4.29 6.81 -2.91 -0.02 4.27 15 9 C 0.09 4.55 5.44 -19.92 -0.11 4.45 15 10 C -0.31 -15.91 7.95 22.81 0.18 -15.73 15 11 C -0.02 -0.92 9.54 22.12 0.21 -0.71 15 12 C -0.28 -11.78 5.31 -19.41 -0.10 -11.88 15 13 C 0.05 1.77 6.27 71.23 0.45 2.22 15 14 Cl -0.23 -7.66 29.13 -2.72 -0.08 -7.74 15 15 C 0.01 0.41 5.74 -21.32 -0.12 0.28 15 16 C -0.16 -5.96 9.26 22.38 0.21 -5.75 15 17 C -0.10 -3.35 9.95 22.03 0.22 -3.13 15 18 C -0.18 -6.26 10.02 22.34 0.22 -6.04 15 19 C -0.09 -3.71 9.46 22.45 0.21 -3.50 15 20 C -0.15 -7.11 5.90 -19.89 -0.12 -7.22 15 21 H 0.29 15.56 6.68 -92.71 -0.62 14.94 15 22 H 0.09 4.60 6.54 -2.91 -0.02 4.58 15 23 H 0.11 4.27 8.06 -2.91 -0.02 4.25 15 24 H 0.10 2.87 8.08 -2.39 -0.02 2.85 15 25 H 0.10 2.94 6.36 -2.38 -0.02 2.92 15 26 H 0.13 4.13 6.30 -2.91 -0.02 4.11 15 27 H 0.14 3.58 8.06 -2.91 -0.02 3.56 15 28 H 0.14 3.86 8.06 -2.91 -0.02 3.84 15 29 H 0.12 4.74 6.67 -2.91 -0.02 4.72 15 Total: -1.00 -56.10 262.62 5.44 -50.66 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: 1.32 Total: 25.95 kcal Atomic # 6 Polarization: -72.79 SS G_CDS: 1.87 Total: -70.92 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.27 Total: -39.39 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 2.06 Total: 41.44 kcal Atomic # 17 Polarization: -7.66 SS G_CDS: -0.08 Total: -7.74 kcal Total: -56.10 5.44 -50.66 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000201099518.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.924 kcal (2) G-P(sol) polarization free energy of solvation -56.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds