Wall clock time and date at job start Mon Mar 30 2020 05:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86792 * 120.00238 * 2 1 4 4 H 1.48500 * 109.47549 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47231 * 299.99904 * 3 2 1 6 6 H 1.48497 * 109.47346 * 59.99689 * 3 2 1 7 7 C 1.40158 * 119.99661 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99641 * 197.06056 * 7 2 1 9 9 C 1.40442 * 120.00383 * 17.05849 * 7 2 1 10 10 C 1.40527 * 120.72074 * 227.16647 * 9 7 2 11 11 C 1.50702 * 119.78618 * 359.97353 * 10 9 7 12 12 Cl 1.80297 * 109.47344 * 274.64245 * 11 10 9 13 13 C 1.38155 * 120.42441 * 180.25469 * 10 9 7 14 14 C 1.37672 * 121.79720 * 359.37902 * 13 10 9 15 15 C 1.40644 * 120.79121 * 0.67111 * 14 13 10 16 16 C 1.40510 * 121.17058 * 179.67337 * 15 14 13 17 17 C 1.36333 * 119.77424 * 179.97438 * 16 15 14 18 18 C 1.39079 * 120.93409 * 0.02622 * 17 16 15 19 19 C 1.37689 * 120.71003 * 359.92838 * 18 17 16 20 20 C 1.39533 * 119.56132 * 0.09085 * 19 18 17 21 21 H 0.96997 * 119.99946 * 354.70428 * 1 2 3 22 22 H 1.09000 * 109.46811 * 154.63951 * 11 10 9 23 23 H 1.09000 * 109.46792 * 34.64200 * 11 10 9 24 24 H 1.08002 * 119.10076 * 179.72521 * 13 10 9 25 25 H 1.07994 * 119.60259 * 180.27061 * 14 13 10 26 26 H 1.08001 * 120.11336 * 359.97213 * 16 15 14 27 27 H 1.07994 * 119.53397 * 179.97438 * 17 16 15 28 28 H 1.07993 * 119.64845 * 179.97438 * 18 17 16 29 29 H 1.08000 * 120.22073 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6176 0.0000 4 1 3.7014 1.3463 0.0006 5 1 1.8827 2.3964 -1.2125 6 1 1.8827 2.3964 1.2124 7 6 2.0081 -1.2138 0.0005 8 1 3.0524 -1.2343 0.2750 9 6 1.3522 -2.4035 -0.3557 10 6 1.4876 -3.5608 0.4299 11 6 2.3455 -3.5288 1.6684 12 17 4.0617 -3.8506 1.2193 13 6 0.8438 -4.7293 0.0708 14 6 0.0449 -4.8031 -1.0479 15 6 -0.1341 -3.6834 -1.8800 16 6 -0.9422 -3.7517 -3.0274 17 6 -1.0962 -2.6486 -3.8136 18 6 -0.4632 -1.4513 -3.4974 19 6 0.3345 -1.3514 -2.3796 20 6 0.5100 -2.4650 -1.5574 21 1 -0.4850 0.8364 0.0775 22 1 2.0034 -4.2923 2.3671 23 1 2.2704 -2.5476 2.1371 24 1 0.9663 -5.6074 0.6877 25 1 -0.4452 -5.7337 -1.2930 26 1 -1.4396 -4.6749 -3.2856 27 1 -1.7179 -2.7056 -4.6948 28 1 -0.5994 -0.5904 -4.1351 29 1 0.8220 -0.4176 -2.1413 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000201101566.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:33 Heat of formation + Delta-G solvation = 11.352199 kcal Electronic energy + Delta-G solvation = -15195.170439 eV Core-core repulsion = 12686.733064 eV Total energy + Delta-G solvation = -2508.437376 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.051 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.86361 -35.81526 -34.65005 -34.11261 -31.14214 -30.00602 -28.66393 -26.39049 -24.57027 -22.16958 -20.76500 -20.28563 -17.56440 -16.14559 -15.41660 -15.29167 -14.67397 -13.57884 -13.45781 -13.39623 -12.86521 -12.68783 -12.22824 -11.98171 -11.77940 -11.62101 -11.26496 -11.21053 -10.89405 -10.43373 -10.11960 -9.87755 -9.79292 -9.43400 -9.26735 -9.11008 -8.43755 -7.42066 -7.06106 -6.56231 -4.63762 1.80563 2.15155 2.83458 2.97438 3.03305 3.23049 3.40580 3.76798 4.19208 4.60780 5.47342 5.69112 5.80887 5.85163 5.94200 6.00864 6.28651 6.31729 6.39205 6.56260 6.60277 6.81941 6.91964 7.10097 7.23934 7.31448 7.46018 7.56854 7.78422 7.83325 7.98600 8.08788 8.28920 8.54441 8.64083 9.93890 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.015010 B = 0.013459 C = 0.007746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.952972 B = 2079.829564 C = 3613.743133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.080 3.920 3 Si 0.900 3.100 4 H -0.255 1.255 5 H -0.268 1.268 6 H -0.271 1.271 7 C -0.462 4.462 8 H 0.098 0.902 9 C 0.178 3.822 10 C -0.260 4.260 11 C 0.057 3.943 12 Cl -0.233 7.233 13 C -0.031 4.031 14 C -0.252 4.252 15 C -0.001 4.001 16 C -0.156 4.156 17 C -0.110 4.110 18 C -0.191 4.191 19 C -0.030 4.030 20 C -0.082 4.082 21 H 0.287 0.713 22 H 0.071 0.929 23 H 0.094 0.906 24 H 0.091 0.909 25 H 0.096 0.904 26 H 0.105 0.895 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.335 -1.020 -0.482 1.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.141 4.141 3 Si 0.724 3.276 4 H -0.179 1.179 5 H -0.193 1.193 6 H -0.196 1.196 7 C -0.491 4.491 8 H 0.116 0.884 9 C 0.175 3.825 10 C -0.262 4.262 11 C -0.004 4.004 12 Cl -0.207 7.207 13 C -0.050 4.050 14 C -0.271 4.271 15 C -0.001 4.001 16 C -0.175 4.175 17 C -0.128 4.128 18 C -0.209 4.209 19 C -0.048 4.048 20 C -0.082 4.082 21 H 0.098 0.902 22 H 0.090 0.910 23 H 0.112 0.888 24 H 0.109 0.891 25 H 0.114 0.886 26 H 0.123 0.877 27 H 0.119 0.881 28 H 0.119 0.881 29 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.247 -0.881 -0.554 1.069 hybrid contribution 0.175 0.741 -0.005 0.761 sum 0.422 -0.140 -0.558 0.714 Atomic orbital electron populations 1.69776 1.07570 1.30253 1.32452 1.25960 0.94741 1.01140 0.92252 0.86358 0.81477 0.80753 0.79027 1.17857 1.19308 1.19616 1.19543 0.98751 0.90529 1.40236 0.88428 1.18382 0.85616 0.91656 0.86885 1.19430 1.10101 0.96322 1.00319 1.22725 0.78816 1.02708 0.96178 1.98668 1.30260 1.96820 1.94952 1.20329 0.94268 0.95426 0.94958 1.20355 1.09379 0.97325 1.00045 1.17894 0.94861 0.93517 0.93831 1.20737 1.02304 0.97982 0.96441 1.20508 0.99751 0.93638 0.98925 1.20808 1.03029 0.97316 0.99755 1.21189 0.94473 0.97555 0.91541 1.19202 1.00942 0.92433 0.95640 0.90179 0.91003 0.88787 0.89099 0.88615 0.87660 0.88110 0.88080 0.86242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.53 11.35 55.56 0.63 -17.90 15 2 C 0.08 1.82 3.42 -17.30 -0.06 1.76 15 3 Si 0.90 17.31 29.60 -169.99 -5.03 12.27 15 4 H -0.26 -4.93 7.11 56.52 0.40 -4.53 15 5 H -0.27 -5.10 7.11 56.52 0.40 -4.69 15 6 H -0.27 -5.14 7.11 56.52 0.40 -4.73 15 7 C -0.46 -11.07 7.24 -38.03 -0.28 -11.34 15 8 H 0.10 2.32 7.83 -52.49 -0.41 1.91 15 9 C 0.18 4.37 5.35 -104.71 -0.56 3.81 15 10 C -0.26 -5.87 5.32 -103.79 -0.55 -6.43 15 11 C 0.06 1.13 6.26 36.01 0.23 1.35 15 12 Cl -0.23 -4.52 29.13 -51.86 -1.51 -6.03 15 13 C -0.03 -0.67 9.54 -39.82 -0.38 -1.05 15 14 C -0.25 -5.51 9.77 -38.88 -0.38 -5.89 15 15 C 0.00 -0.02 5.74 -106.88 -0.61 -0.63 15 16 C -0.16 -3.22 9.77 -39.41 -0.38 -3.61 15 17 C -0.11 -2.15 9.95 -39.96 -0.40 -2.55 15 18 C -0.19 -3.95 10.02 -39.47 -0.40 -4.35 15 19 C -0.03 -0.69 8.06 -39.30 -0.32 -1.00 15 20 C -0.08 -2.01 5.56 -104.66 -0.58 -2.59 15 21 H 0.29 6.27 8.30 -40.82 -0.34 5.93 15 22 H 0.07 1.23 8.04 -51.93 -0.42 0.82 15 23 H 0.09 1.88 7.29 -51.93 -0.38 1.50 15 24 H 0.09 1.70 8.05 -52.49 -0.42 1.28 15 25 H 0.10 1.86 8.06 -52.49 -0.42 1.44 15 26 H 0.11 1.88 8.06 -52.49 -0.42 1.46 15 27 H 0.10 1.63 8.06 -52.49 -0.42 1.21 15 28 H 0.10 1.83 8.06 -52.49 -0.42 1.41 15 29 H 0.12 2.81 5.50 -52.49 -0.29 2.52 15 LS Contribution 264.63 15.07 3.99 3.99 Total: -1.00 -25.35 264.63 -9.34 -34.69 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -2.74 Total: 5.50 kcal Atomic # 6 Polarization: -27.84 SS G_CDS: -4.67 Total: -32.52 kcal Atomic # 7 Polarization: -18.53 SS G_CDS: 0.63 Total: -17.90 kcal Atomic # 14 Polarization: 17.31 SS G_CDS: -5.03 Total: 12.27 kcal Atomic # 17 Polarization: -4.52 SS G_CDS: -1.51 Total: -6.03 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -25.35 -9.34 -34.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000201101566.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.040 kcal (2) G-P(sol) polarization free energy of solvation -25.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds