Wall clock time and date at job start Mon Mar 30 2020 05:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86792 * 120.00238 * 2 1 4 4 H 1.48500 * 109.47549 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47231 * 299.99904 * 3 2 1 6 6 H 1.48497 * 109.47346 * 59.99689 * 3 2 1 7 7 C 1.40158 * 119.99661 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99641 * 197.06056 * 7 2 1 9 9 C 1.40442 * 120.00383 * 17.05849 * 7 2 1 10 10 C 1.40527 * 120.72074 * 227.16647 * 9 7 2 11 11 C 1.50702 * 119.78618 * 359.97353 * 10 9 7 12 12 Cl 1.80297 * 109.47344 * 274.64245 * 11 10 9 13 13 C 1.38155 * 120.42441 * 180.25469 * 10 9 7 14 14 C 1.37672 * 121.79720 * 359.37902 * 13 10 9 15 15 C 1.40644 * 120.79121 * 0.67111 * 14 13 10 16 16 C 1.40510 * 121.17058 * 179.67337 * 15 14 13 17 17 C 1.36333 * 119.77424 * 179.97438 * 16 15 14 18 18 C 1.39079 * 120.93409 * 0.02622 * 17 16 15 19 19 C 1.37689 * 120.71003 * 359.92838 * 18 17 16 20 20 C 1.39533 * 119.56132 * 0.09085 * 19 18 17 21 21 H 0.96997 * 119.99946 * 354.70428 * 1 2 3 22 22 H 1.09000 * 109.46811 * 154.63951 * 11 10 9 23 23 H 1.09000 * 109.46792 * 34.64200 * 11 10 9 24 24 H 1.08002 * 119.10076 * 179.72521 * 13 10 9 25 25 H 1.07994 * 119.60259 * 180.27061 * 14 13 10 26 26 H 1.08001 * 120.11336 * 359.97213 * 16 15 14 27 27 H 1.07994 * 119.53397 * 179.97438 * 17 16 15 28 28 H 1.07993 * 119.64845 * 179.97438 * 18 17 16 29 29 H 1.08000 * 120.22073 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6176 0.0000 4 1 3.7014 1.3463 0.0006 5 1 1.8827 2.3964 -1.2125 6 1 1.8827 2.3964 1.2124 7 6 2.0081 -1.2138 0.0005 8 1 3.0524 -1.2343 0.2750 9 6 1.3522 -2.4035 -0.3557 10 6 1.4876 -3.5608 0.4299 11 6 2.3455 -3.5288 1.6684 12 17 4.0617 -3.8506 1.2193 13 6 0.8438 -4.7293 0.0708 14 6 0.0449 -4.8031 -1.0479 15 6 -0.1341 -3.6834 -1.8800 16 6 -0.9422 -3.7517 -3.0274 17 6 -1.0962 -2.6486 -3.8136 18 6 -0.4632 -1.4513 -3.4974 19 6 0.3345 -1.3514 -2.3796 20 6 0.5100 -2.4650 -1.5574 21 1 -0.4850 0.8364 0.0775 22 1 2.0034 -4.2923 2.3671 23 1 2.2704 -2.5476 2.1371 24 1 0.9663 -5.6074 0.6877 25 1 -0.4452 -5.7337 -1.2930 26 1 -1.4396 -4.6749 -3.2856 27 1 -1.7179 -2.7056 -4.6948 28 1 -0.5994 -0.5904 -4.1351 29 1 0.8220 -0.4176 -2.1413 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000201101566.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:33 Heat of formation + Delta-G solvation = 1.283211 kcal Electronic energy + Delta-G solvation = -15195.607063 eV Core-core repulsion = 12686.733064 eV Total energy + Delta-G solvation = -2508.874000 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.051 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.51826 -37.43868 -36.24868 -35.79972 -32.82376 -31.64016 -30.33135 -28.04772 -26.25384 -23.82789 -22.40911 -21.96237 -19.27536 -17.78520 -17.06987 -16.93329 -16.30288 -15.18234 -15.06340 -14.99699 -14.48914 -14.31274 -13.88383 -13.58868 -13.39534 -13.24546 -12.92236 -12.79439 -12.48214 -12.02132 -11.71809 -11.51670 -11.42997 -11.00236 -10.88557 -10.80316 -10.13520 -9.09263 -8.76046 -8.25081 -6.40146 0.12618 0.48499 1.27488 1.39162 1.51340 1.61363 1.76874 2.17418 2.53229 2.91460 3.76315 4.12950 4.22522 4.30517 4.36917 4.46289 4.68744 4.75486 4.78529 4.91539 4.96356 5.17376 5.21240 5.46447 5.58624 5.66337 5.81131 5.90786 6.09615 6.12432 6.29533 6.37605 6.59121 6.82191 6.92088 8.27388 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.015010 B = 0.013459 C = 0.007746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.952972 B = 2079.829564 C = 3613.743133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.053 3.947 3 Si 0.960 3.040 4 H -0.259 1.259 5 H -0.264 1.264 6 H -0.264 1.264 7 C -0.485 4.485 8 H 0.089 0.911 9 C 0.147 3.853 10 C -0.271 4.271 11 C 0.062 3.938 12 Cl -0.229 7.229 13 C -0.045 4.045 14 C -0.254 4.254 15 C -0.032 4.032 16 C -0.158 4.158 17 C -0.109 4.109 18 C -0.189 4.189 19 C -0.056 4.056 20 C -0.111 4.111 21 H 0.291 0.709 22 H 0.099 0.901 23 H 0.084 0.916 24 H 0.119 0.881 25 H 0.121 0.879 26 H 0.135 0.865 27 H 0.142 0.858 28 H 0.126 0.874 29 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.253 -1.578 -1.219 2.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.165 4.165 3 Si 0.781 3.219 4 H -0.183 1.183 5 H -0.188 1.188 6 H -0.189 1.189 7 C -0.514 4.514 8 H 0.107 0.893 9 C 0.144 3.856 10 C -0.273 4.273 11 C 0.001 3.999 12 Cl -0.203 7.203 13 C -0.063 4.063 14 C -0.272 4.272 15 C -0.032 4.032 16 C -0.176 4.176 17 C -0.127 4.127 18 C -0.207 4.207 19 C -0.074 4.074 20 C -0.112 4.112 21 H 0.102 0.898 22 H 0.117 0.883 23 H 0.103 0.897 24 H 0.137 0.863 25 H 0.139 0.861 26 H 0.153 0.847 27 H 0.160 0.840 28 H 0.144 0.856 29 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.339 -1.451 -1.290 1.971 hybrid contribution 0.310 0.795 0.155 0.867 sum -0.029 -0.656 -1.135 1.311 Atomic orbital electron populations 1.69818 1.08754 1.31090 1.33798 1.26516 0.95188 1.03407 0.91363 0.85481 0.79895 0.77310 0.79239 1.18260 1.18841 1.18854 1.19558 0.98479 0.91448 1.41880 0.89307 1.18747 0.86593 0.92639 0.87602 1.19808 1.10276 0.96316 1.00856 1.22702 0.78504 1.03255 0.95476 1.98663 1.29890 1.96754 1.95022 1.20651 0.94083 0.96067 0.95494 1.20746 1.08863 0.97913 0.99715 1.18310 0.95921 0.93567 0.95432 1.21122 1.01414 0.99619 0.95432 1.20935 0.99309 0.92560 0.99846 1.21186 1.01674 0.98895 0.98906 1.21228 0.96110 0.97082 0.92966 1.19523 1.01909 0.93571 0.96183 0.89788 0.88290 0.89712 0.86343 0.86136 0.84727 0.84048 0.85616 0.87521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.54 11.35 21.86 0.25 -39.29 15 2 C 0.05 2.46 3.42 85.32 0.29 2.75 15 3 Si 0.96 36.05 29.60 68.60 2.03 38.08 15 4 H -0.26 -9.76 7.11 99.48 0.71 -9.05 15 5 H -0.26 -9.61 7.11 99.48 0.71 -8.91 15 6 H -0.26 -9.51 7.11 99.48 0.71 -8.81 15 7 C -0.48 -23.92 7.24 23.27 0.17 -23.75 15 8 H 0.09 4.37 7.83 -2.91 -0.02 4.35 15 9 C 0.15 7.39 5.35 -19.92 -0.11 7.28 15 10 C -0.27 -12.24 5.32 -19.33 -0.10 -12.35 15 11 C 0.06 2.42 6.26 71.24 0.45 2.86 15 12 Cl -0.23 -8.78 29.13 -2.72 -0.08 -8.86 15 13 C -0.04 -1.87 9.54 22.12 0.21 -1.66 15 14 C -0.25 -10.71 9.77 22.72 0.22 -10.49 15 15 C -0.03 -1.47 5.74 -21.32 -0.12 -1.59 15 16 C -0.16 -6.12 9.77 22.38 0.22 -5.90 15 17 C -0.11 -3.93 9.95 22.03 0.22 -3.71 15 18 C -0.19 -7.54 10.02 22.34 0.22 -7.31 15 19 C -0.06 -2.62 8.06 22.45 0.18 -2.44 15 20 C -0.11 -5.54 5.56 -19.89 -0.11 -5.65 15 21 H 0.29 12.98 8.30 -92.71 -0.77 12.21 15 22 H 0.10 3.25 8.04 -2.39 -0.02 3.23 15 23 H 0.08 3.43 7.29 -2.39 -0.02 3.41 15 24 H 0.12 4.17 8.05 -2.91 -0.02 4.15 15 25 H 0.12 4.35 8.06 -2.91 -0.02 4.33 15 26 H 0.13 4.32 8.06 -2.91 -0.02 4.30 15 27 H 0.14 3.93 8.06 -2.91 -0.02 3.90 15 28 H 0.13 4.28 8.06 -2.91 -0.02 4.25 15 29 H 0.11 5.16 5.50 -2.91 -0.02 5.15 15 Total: -1.00 -54.59 264.63 5.10 -49.49 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: 1.16 Total: 22.52 kcal Atomic # 6 Polarization: -63.69 SS G_CDS: 1.74 Total: -61.95 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.25 Total: -39.29 kcal Atomic # 14 Polarization: 36.05 SS G_CDS: 2.03 Total: 38.08 kcal Atomic # 17 Polarization: -8.78 SS G_CDS: -0.08 Total: -8.86 kcal Total: -54.59 5.10 -49.49 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000201101566.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.777 kcal (2) G-P(sol) polarization free energy of solvation -54.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds