Wall clock time and date at job start Mon Mar 30 2020 06:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31028 * 1 3 3 Si 1.86800 * 120.00069 * 2 1 4 4 H 1.48500 * 109.47060 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47055 * 119.99692 * 3 2 1 6 6 H 1.48498 * 109.46852 * 239.99690 * 3 2 1 7 7 C 1.39699 * 119.99686 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99997 * 158.21761 * 7 2 1 9 9 C 1.41597 * 120.00191 * 338.21802 * 7 2 1 10 10 C 1.39283 * 126.55573 * 341.11774 * 9 7 2 11 11 N 1.34504 * 107.18354 * 179.97438 * 10 9 7 12 12 C 1.46501 * 125.66894 * 179.97438 * 11 10 9 13 13 C 1.53003 * 117.50359 * 343.74198 * 12 11 10 14 14 C 1.53004 * 117.49533 * 275.08264 * 12 11 10 15 15 N 1.39870 * 108.65153 * 0.02562 * 11 10 9 16 16 C 1.30326 * 109.23134 * 359.74893 * 15 11 10 17 17 C 1.50694 * 125.97719 * 180.23370 * 16 15 11 18 18 F 1.39900 * 109.47108 * 270.18359 * 17 16 15 19 19 F 1.39902 * 109.47243 * 30.18605 * 17 16 15 20 20 F 1.39900 * 109.47549 * 150.18223 * 17 16 15 21 21 H 0.96997 * 120.00145 * 173.98786 * 1 2 3 22 22 H 1.08003 * 126.40526 * 359.92365 * 10 9 7 23 23 H 1.09001 * 115.54792 * 129.42107 * 12 11 10 24 24 H 1.08996 * 117.49267 * 0.02562 * 13 12 11 25 25 H 1.08999 * 117.49446 * 145.02288 * 13 12 11 26 26 H 1.09002 * 117.49296 * 214.98111 * 14 12 11 27 27 H 1.08998 * 117.50374 * 359.97438 * 14 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2443 1.6177 0.0000 4 1 1.2793 2.7464 -0.0006 5 1 3.0980 1.6964 1.2126 6 1 3.0981 1.6963 -1.2125 7 6 2.0087 -1.2099 0.0005 8 1 3.0309 -1.2435 -0.3465 9 6 1.3765 -2.3922 0.4561 10 6 0.2385 -2.4692 1.2554 11 7 -0.0223 -3.7741 1.4508 12 6 -1.1341 -4.3148 2.2368 13 6 -1.8509 -3.3617 3.1955 14 6 -0.9301 -4.4532 3.7469 15 7 0.9454 -4.5290 0.7799 16 6 1.7783 -3.7249 0.1815 17 6 2.9629 -4.1383 -0.6532 18 9 4.0909 -4.2591 0.1655 19 9 2.6963 -5.3682 -1.2644 20 9 3.2012 -3.1713 -1.6358 21 1 -0.4850 -0.8354 -0.0880 22 1 -0.3281 -1.6367 1.6459 23 1 -1.7363 -5.0745 1.7386 24 1 -1.4954 -2.3323 3.2410 25 1 -2.9245 -3.4947 3.3281 26 1 -1.3985 -5.3038 4.2421 27 1 0.0315 -4.1425 4.1555 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000205590661.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:22 Heat of formation + Delta-G solvation = -57.418198 kcal Electronic energy + Delta-G solvation = -18000.953433 eV Core-core repulsion = 14539.260795 eV Total energy + Delta-G solvation = -3461.692638 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.28282 -46.84333 -46.75402 -40.02180 -36.77689 -33.81490 -30.83540 -28.76873 -25.81646 -25.21749 -22.39365 -21.93641 -19.97309 -19.45739 -18.18166 -17.68798 -17.26936 -16.38107 -15.93139 -14.97440 -14.05613 -13.78444 -13.66626 -13.55606 -13.26992 -13.17383 -13.04827 -12.96049 -12.68137 -12.41632 -11.65274 -11.49965 -11.09422 -10.91536 -10.62371 -10.59676 -10.31712 -9.88354 -9.63332 -8.90900 -8.48797 -7.55198 -7.01874 -4.25838 2.61458 2.93686 3.15401 3.26385 3.45346 3.68752 3.76121 3.88085 4.16810 4.70088 4.78971 4.90759 5.00667 5.08801 5.13106 5.39863 5.63909 5.71483 5.99811 6.12002 6.23247 6.70367 7.01900 7.12829 7.92506 7.97703 8.21659 8.58802 8.66283 9.01346 10.29146 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.015196 B = 0.012280 C = 0.007375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.099939 B = 2279.538631 C = 3795.510500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.039 3.961 3 Si 1.066 2.934 4 H -0.277 1.277 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.511 4.511 8 H 0.077 0.923 9 C 0.019 3.981 10 C -0.108 4.108 11 N -0.324 5.324 12 C 0.097 3.903 13 C -0.169 4.169 14 C -0.184 4.184 15 N -0.266 5.266 16 C -0.101 4.101 17 C 0.564 3.436 18 F -0.185 7.185 19 F -0.186 7.186 20 F -0.164 7.164 21 H 0.291 0.709 22 H 0.165 0.835 23 H 0.128 0.872 24 H 0.106 0.894 25 H 0.109 0.891 26 H 0.103 0.897 27 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.223 -4.118 3.669 5.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.178 4.178 3 Si 0.890 3.110 4 H -0.202 1.202 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.543 4.543 8 H 0.095 0.905 9 C 0.009 3.991 10 C -0.251 4.251 11 N -0.112 5.112 12 C -0.007 4.007 13 C -0.207 4.207 14 C -0.222 4.222 15 N -0.094 5.094 16 C -0.264 4.264 17 C 0.508 3.492 18 F -0.166 7.166 19 F -0.168 7.168 20 F -0.145 7.145 21 H 0.105 0.895 22 H 0.182 0.818 23 H 0.145 0.855 24 H 0.124 0.876 25 H 0.127 0.873 26 H 0.122 0.878 27 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.788 -3.670 3.954 5.683 hybrid contribution 0.472 -0.958 -0.296 1.109 sum -1.316 -4.628 3.658 6.044 Atomic orbital electron populations 1.70565 1.07939 1.33489 1.33956 1.26729 0.95775 1.03617 0.91688 0.83621 0.75471 0.74084 0.77790 1.20182 1.20346 1.20309 1.19795 1.01013 0.92204 1.41324 0.90534 1.17786 0.93943 0.90782 0.96557 1.22502 1.06341 0.85291 1.10953 1.46913 1.20307 1.04333 1.39601 1.21406 0.89990 1.01607 0.87744 1.23337 0.98820 0.97255 1.01288 1.23435 1.01857 1.01049 0.95872 1.76367 1.00543 1.19697 1.12810 1.21822 1.00420 0.95355 1.08799 1.16883 0.81157 0.73615 0.77540 1.93153 1.54659 1.95793 1.73033 1.93130 1.93998 1.45328 1.84322 1.93195 1.94801 1.63303 1.63194 0.89486 0.81813 0.85454 0.87561 0.87307 0.87821 0.88241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.11 12.67 55.54 0.70 -21.41 15 2 C 0.04 1.00 5.29 -17.35 -0.09 0.91 15 3 Si 1.07 22.24 29.98 -169.99 -5.10 17.14 15 4 H -0.28 -5.71 7.11 56.52 0.40 -5.31 15 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 15 6 H -0.28 -5.58 7.11 56.52 0.40 -5.17 15 7 C -0.51 -13.80 8.41 -37.76 -0.32 -14.12 15 8 H 0.08 2.05 6.96 -52.49 -0.37 1.69 15 9 C 0.02 0.51 5.56 -106.83 -0.59 -0.09 15 10 C -0.11 -2.64 8.84 -15.99 -0.14 -2.78 15 11 N -0.32 -7.20 3.91 -53.91 -0.21 -7.41 15 12 C 0.10 1.61 7.11 -67.93 -0.48 1.13 15 13 C -0.17 -2.29 9.98 -26.69 -0.27 -2.56 15 14 C -0.18 -2.51 10.46 -26.69 -0.28 -2.79 15 15 N -0.27 -6.47 12.40 33.99 0.42 -6.05 15 16 C -0.10 -2.56 6.62 -81.84 -0.54 -3.10 15 17 C 0.56 12.93 3.50 36.00 0.13 13.06 15 18 F -0.18 -4.06 17.30 2.25 0.04 -4.02 15 19 F -0.19 -4.01 17.25 2.25 0.04 -3.97 15 20 F -0.16 -3.79 15.35 2.25 0.03 -3.75 15 21 H 0.29 7.86 6.10 -40.82 -0.25 7.61 15 22 H 0.16 3.93 5.95 -52.48 -0.31 3.61 15 23 H 0.13 1.87 8.14 -51.93 -0.42 1.45 15 24 H 0.11 1.61 6.98 -51.93 -0.36 1.24 15 25 H 0.11 1.14 8.14 -51.93 -0.42 0.72 15 26 H 0.10 1.11 8.14 -51.93 -0.42 0.69 15 27 H 0.10 1.52 8.14 -51.93 -0.42 1.10 15 LS Contribution 254.52 15.07 3.84 3.84 Total: -1.00 -28.92 254.52 -4.60 -33.52 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -1.78 Total: 2.45 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -2.59 Total: -10.34 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: 0.91 Total: -34.86 kcal Atomic # 9 Polarization: -11.86 SS G_CDS: 0.11 Total: -11.74 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.10 Total: 17.14 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -28.92 -4.60 -33.52 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000205590661.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.897 kcal (2) G-P(sol) polarization free energy of solvation -28.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds