Wall clock time and date at job start Mon Mar 30 2020 06:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31028 * 1 3 3 Si 1.86800 * 120.00069 * 2 1 4 4 H 1.48500 * 109.47060 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47055 * 119.99692 * 3 2 1 6 6 H 1.48498 * 109.46852 * 239.99690 * 3 2 1 7 7 C 1.39699 * 119.99686 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99997 * 158.21761 * 7 2 1 9 9 C 1.41597 * 120.00191 * 338.21802 * 7 2 1 10 10 C 1.39283 * 126.55573 * 341.11774 * 9 7 2 11 11 N 1.34504 * 107.18354 * 179.97438 * 10 9 7 12 12 C 1.46501 * 125.66894 * 179.97438 * 11 10 9 13 13 C 1.53003 * 117.50359 * 343.74198 * 12 11 10 14 14 C 1.53004 * 117.49533 * 275.08264 * 12 11 10 15 15 N 1.39870 * 108.65153 * 0.02562 * 11 10 9 16 16 C 1.30326 * 109.23134 * 359.74893 * 15 11 10 17 17 C 1.50694 * 125.97719 * 180.23370 * 16 15 11 18 18 F 1.39900 * 109.47108 * 270.18359 * 17 16 15 19 19 F 1.39902 * 109.47243 * 30.18605 * 17 16 15 20 20 F 1.39900 * 109.47549 * 150.18223 * 17 16 15 21 21 H 0.96997 * 120.00145 * 173.98786 * 1 2 3 22 22 H 1.08003 * 126.40526 * 359.92365 * 10 9 7 23 23 H 1.09001 * 115.54792 * 129.42107 * 12 11 10 24 24 H 1.08996 * 117.49267 * 0.02562 * 13 12 11 25 25 H 1.08999 * 117.49446 * 145.02288 * 13 12 11 26 26 H 1.09002 * 117.49296 * 214.98111 * 14 12 11 27 27 H 1.08998 * 117.50374 * 359.97438 * 14 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2443 1.6177 0.0000 4 1 1.2793 2.7464 -0.0006 5 1 3.0980 1.6964 1.2126 6 1 3.0981 1.6963 -1.2125 7 6 2.0087 -1.2099 0.0005 8 1 3.0309 -1.2435 -0.3465 9 6 1.3765 -2.3922 0.4561 10 6 0.2385 -2.4692 1.2554 11 7 -0.0223 -3.7741 1.4508 12 6 -1.1341 -4.3148 2.2368 13 6 -1.8509 -3.3617 3.1955 14 6 -0.9301 -4.4532 3.7469 15 7 0.9454 -4.5290 0.7799 16 6 1.7783 -3.7249 0.1815 17 6 2.9629 -4.1383 -0.6532 18 9 4.0909 -4.2591 0.1655 19 9 2.6963 -5.3682 -1.2644 20 9 3.2012 -3.1713 -1.6358 21 1 -0.4850 -0.8354 -0.0880 22 1 -0.3281 -1.6367 1.6459 23 1 -1.7363 -5.0745 1.7386 24 1 -1.4954 -2.3323 3.2410 25 1 -2.9245 -3.4947 3.3281 26 1 -1.3985 -5.3038 4.2421 27 1 0.0315 -4.1425 4.1555 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000205590661.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:21 Heat of formation + Delta-G solvation = -74.020951 kcal Electronic energy + Delta-G solvation = -18001.673382 eV Core-core repulsion = 14539.260795 eV Total energy + Delta-G solvation = -3462.412587 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -51.09516 -48.62967 -48.58301 -41.83172 -38.10279 -35.74331 -32.59089 -30.70246 -27.61613 -27.08474 -23.65832 -23.44935 -21.82382 -21.14255 -20.03467 -19.50027 -19.10114 -18.04753 -17.63771 -16.34741 -15.78213 -15.56174 -15.48130 -15.30830 -15.05885 -14.93762 -14.80325 -14.77536 -14.37128 -14.12444 -13.39619 -12.87612 -12.79061 -12.49237 -12.17161 -11.92657 -11.91535 -11.48851 -11.46165 -10.80619 -10.23327 -9.49679 -9.03263 -6.27757 0.77084 1.26703 1.40575 1.57722 1.85059 1.92191 1.95460 2.43719 2.62057 2.92707 3.13095 3.18536 3.52925 3.55027 3.77495 3.94349 4.19717 4.59416 4.70328 4.79005 4.92472 5.05479 5.08714 5.22396 5.94517 5.97580 6.32899 6.62892 6.75075 7.04138 8.26618 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.015196 B = 0.012280 C = 0.007375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.099939 B = 2279.538631 C = 3795.510500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.004 3.996 3 Si 1.114 2.886 4 H -0.272 1.272 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.540 4.540 8 H 0.067 0.933 9 C -0.017 4.017 10 C -0.097 4.097 11 N -0.313 5.313 12 C 0.049 3.951 13 C -0.150 4.150 14 C -0.163 4.163 15 N -0.276 5.276 16 C -0.126 4.126 17 C 0.570 3.430 18 F -0.180 7.180 19 F -0.178 7.178 20 F -0.167 7.167 21 H 0.279 0.721 22 H 0.166 0.834 23 H 0.149 0.851 24 H 0.087 0.913 25 H 0.149 0.851 26 H 0.143 0.857 27 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.048 -4.236 4.778 6.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.208 4.208 3 Si 0.933 3.067 4 H -0.196 1.196 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.572 4.572 8 H 0.086 0.914 9 C -0.027 4.027 10 C -0.241 4.241 11 N -0.100 5.100 12 C -0.053 4.053 13 C -0.188 4.188 14 C -0.201 4.201 15 N -0.106 5.106 16 C -0.287 4.287 17 C 0.514 3.486 18 F -0.161 7.161 19 F -0.159 7.159 20 F -0.149 7.149 21 H 0.091 0.909 22 H 0.183 0.817 23 H 0.167 0.833 24 H 0.106 0.894 25 H 0.167 0.833 26 H 0.161 0.839 27 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.622 -3.833 5.074 6.878 hybrid contribution 0.620 -1.047 -0.554 1.337 sum -2.002 -4.880 4.520 6.946 Atomic orbital electron populations 1.70678 1.08429 1.32591 1.35818 1.28057 0.95906 1.06463 0.90348 0.83012 0.74657 0.70375 0.78668 1.19645 1.19082 1.19083 1.19940 1.00928 0.93352 1.43013 0.91438 1.18157 0.95314 0.91488 0.97735 1.22531 1.05376 0.86424 1.09794 1.47400 1.20460 1.03593 1.38570 1.22134 0.89771 1.04258 0.89130 1.23485 1.00926 0.95899 0.98498 1.23516 1.01352 1.02315 0.92905 1.76299 1.00989 1.20008 1.13267 1.22058 1.01606 0.95120 1.09949 1.16672 0.80835 0.73779 0.77353 1.93154 1.54267 1.95776 1.72927 1.93138 1.93966 1.44689 1.84124 1.93182 1.94791 1.63593 1.63289 0.90866 0.81658 0.83337 0.89439 0.83333 0.83887 0.90135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -45.40 12.67 21.79 0.28 -45.12 15 2 C 0.00 0.21 5.29 85.17 0.45 0.66 15 3 Si 1.11 44.47 29.98 68.60 2.06 46.53 15 4 H -0.27 -10.54 7.11 99.48 0.71 -9.83 15 5 H -0.27 -10.02 7.11 99.48 0.71 -9.32 15 6 H -0.27 -10.04 7.11 99.48 0.71 -9.34 15 7 C -0.54 -29.69 8.41 23.45 0.20 -29.49 15 8 H 0.07 3.71 6.96 -2.91 -0.02 3.69 15 9 C -0.02 -0.92 5.56 -21.30 -0.12 -1.04 15 10 C -0.10 -4.75 8.84 84.54 0.75 -4.00 15 11 N -0.31 -13.74 3.91 -324.46 -1.27 -15.00 15 12 C 0.05 1.52 7.11 44.99 0.32 1.84 15 13 C -0.15 -3.63 9.98 30.62 0.31 -3.33 15 14 C -0.16 -3.95 10.46 30.62 0.32 -3.63 15 15 N -0.28 -13.38 12.40 -46.36 -0.57 -13.95 15 16 C -0.13 -6.45 6.62 43.68 0.29 -6.16 15 17 C 0.57 26.31 3.50 71.23 0.25 26.56 15 18 F -0.18 -7.90 17.30 44.97 0.78 -7.13 15 19 F -0.18 -7.62 17.25 44.97 0.78 -6.85 15 20 F -0.17 -7.86 15.35 44.97 0.69 -7.16 15 21 H 0.28 15.32 6.10 -92.71 -0.57 14.76 15 22 H 0.17 8.01 5.95 -2.91 -0.02 7.99 15 23 H 0.15 3.97 8.14 -2.39 -0.02 3.95 15 24 H 0.09 2.50 6.98 -2.39 -0.02 2.48 15 25 H 0.15 2.43 8.14 -2.39 -0.02 2.41 15 26 H 0.14 2.38 8.14 -2.39 -0.02 2.36 15 27 H 0.08 2.31 8.14 -2.39 -0.02 2.29 15 Total: -1.00 -62.74 254.52 6.92 -55.82 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: 1.42 Total: 11.45 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: 2.76 Total: -18.58 kcal Atomic # 7 Polarization: -72.51 SS G_CDS: -1.57 Total: -74.08 kcal Atomic # 9 Polarization: -23.38 SS G_CDS: 2.24 Total: -21.14 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.06 Total: 46.53 kcal Total: -62.74 6.92 -55.82 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000205590661.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.199 kcal (2) G-P(sol) polarization free energy of solvation -62.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds