Wall clock time and date at job start Mon Mar 30 2020 06:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31022 * 1 3 3 Si 1.86800 * 120.00053 * 2 1 4 4 H 1.48504 * 109.47038 * 271.95189 * 3 2 1 5 5 H 1.48498 * 109.47244 * 31.95090 * 3 2 1 6 6 H 1.48502 * 109.47353 * 151.95668 * 3 2 1 7 7 C 1.39693 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00247 * 343.89576 * 7 2 1 9 9 C 1.41600 * 119.99922 * 163.89424 * 7 2 1 10 10 C 1.41885 * 126.55729 * 341.29433 * 9 7 2 11 11 N 1.30322 * 108.04389 * 180.02562 * 10 9 7 12 12 N 1.39874 * 109.23381 * 0.02562 * 11 10 9 13 13 C 1.46499 * 125.67638 * 179.97438 * 12 11 10 14 14 C 1.53001 * 117.49797 * 300.02849 * 13 12 11 15 15 C 1.52998 * 60.03405 * 107.47827 * 14 13 12 16 16 C 1.34498 * 108.64688 * 0.24155 * 12 11 10 17 17 C 1.50706 * 126.40600 * 179.72091 * 16 12 11 18 18 F 1.39898 * 109.47018 * 89.99550 * 17 16 12 19 19 F 1.39900 * 109.47205 * 209.99997 * 17 16 12 20 20 F 1.39900 * 109.46626 * 329.99826 * 17 16 12 21 21 H 0.97001 * 120.00029 * 359.97438 * 1 2 3 22 22 H 1.07996 * 125.97540 * 359.97438 * 10 9 7 23 23 H 1.08994 * 115.56820 * 154.33661 * 13 12 11 24 24 H 1.09005 * 117.49646 * 214.98099 * 14 13 12 25 25 H 1.09001 * 117.50142 * 359.97020 * 14 13 12 26 26 H 1.08992 * 117.50175 * 107.50233 * 15 14 13 27 27 H 1.09001 * 117.49578 * 252.52520 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6177 0.0000 4 1 2.4504 2.0702 -1.3993 5 1 1.4630 2.6404 0.7409 6 1 3.5619 1.4286 0.6582 7 6 2.0087 -1.2098 -0.0005 8 1 1.5005 -2.1269 0.2585 9 6 3.3830 -1.2337 -0.3407 10 6 4.0971 -0.2295 -1.0442 11 7 5.3349 -0.6204 -1.1599 12 7 5.4820 -1.8710 -0.5508 13 6 6.7252 -2.6419 -0.4719 14 6 7.3888 -3.0491 -1.7891 15 6 8.0145 -1.9522 -0.9252 16 6 4.2908 -2.2505 -0.0548 17 6 3.9945 -3.5346 0.6764 18 9 4.1935 -3.3465 2.0483 19 9 2.6662 -3.9074 0.4445 20 9 4.8490 -4.5417 0.2150 21 1 -0.4850 0.8400 0.0004 22 1 3.6864 0.6963 -1.4190 23 1 6.7941 -3.3393 0.3629 24 1 7.8941 -4.0144 -1.8207 25 1 6.9001 -2.7438 -2.7143 26 1 8.9313 -2.1958 -0.3886 27 1 7.9370 -0.9251 -1.2820 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000205593373.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:24 Heat of formation + Delta-G solvation = -49.060402 kcal Electronic energy + Delta-G solvation = -18334.842994 eV Core-core repulsion = 14873.512777 eV Total energy + Delta-G solvation = -3461.330217 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.27769 -46.86695 -46.71600 -40.00121 -36.62260 -33.58981 -30.81819 -30.25388 -26.29214 -23.90398 -22.72469 -22.21423 -20.08714 -19.77634 -17.75677 -17.61209 -17.55087 -16.56544 -15.41082 -14.80063 -14.51620 -13.96296 -13.91578 -13.52832 -13.41400 -13.24376 -13.01401 -12.93783 -12.81353 -12.42256 -11.68164 -11.38789 -11.29241 -11.18220 -10.88193 -10.44875 -10.27455 -10.01775 -9.47939 -9.35915 -8.42559 -7.70591 -6.93202 -4.40616 2.37255 2.96595 3.06726 3.17698 3.20537 3.61407 3.66517 3.90894 4.04497 4.72487 4.89950 4.99585 5.01851 5.07042 5.13318 5.43471 5.74979 5.80391 5.84227 6.11743 6.30350 6.48734 6.81941 7.00483 7.40773 7.97075 8.29938 8.41991 8.58768 8.80926 10.10190 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.024015 B = 0.010947 C = 0.008212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.645290 B = 2557.174945 C = 3408.914546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.088 3.912 3 Si 0.898 3.102 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.246 1.246 7 C -0.430 4.430 8 H 0.104 0.896 9 C 0.041 3.959 10 C -0.032 4.032 11 N -0.262 5.262 12 N -0.336 5.336 13 C 0.100 3.900 14 C -0.185 4.185 15 C -0.172 4.172 16 C -0.210 4.210 17 C 0.560 3.440 18 F -0.189 7.189 19 F -0.167 7.167 20 F -0.197 7.197 21 H 0.286 0.714 22 H 0.170 0.830 23 H 0.132 0.868 24 H 0.100 0.900 25 H 0.098 0.902 26 H 0.100 0.900 27 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.171 -2.892 -0.308 9.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.131 4.131 3 Si 0.724 3.276 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.169 1.169 7 C -0.461 4.461 8 H 0.121 0.879 9 C 0.030 3.970 10 C -0.220 4.220 11 N -0.084 5.084 12 N -0.127 5.127 13 C -0.005 4.005 14 C -0.224 4.224 15 C -0.210 4.210 16 C -0.328 4.328 17 C 0.504 3.496 18 F -0.171 7.171 19 F -0.148 7.148 20 F -0.179 7.179 21 H 0.096 0.904 22 H 0.186 0.814 23 H 0.150 0.850 24 H 0.118 0.882 25 H 0.117 0.883 26 H 0.118 0.882 27 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 10.063 -2.630 -0.666 10.422 hybrid contribution -0.635 0.353 0.379 0.820 sum 9.428 -2.276 -0.286 9.703 Atomic orbital electron populations 1.69724 1.07713 1.30067 1.35804 1.25937 0.94748 1.01059 0.91352 0.86649 0.81212 0.80533 0.79169 1.19196 1.21114 1.16924 1.19042 0.90695 0.96723 1.39621 0.87854 1.17941 0.93732 0.90050 0.95238 1.23814 0.91806 1.01515 1.04857 1.76360 1.20033 0.95274 1.16761 1.46277 1.05040 1.13872 1.47469 1.21509 0.82077 0.97749 0.99151 1.23418 1.03721 0.99351 0.95900 1.23239 0.95119 0.99290 1.03340 1.19900 0.88828 1.01178 1.22860 1.17033 0.73862 0.82311 0.76415 1.93165 1.94823 1.95320 1.33753 1.93158 1.35300 1.92033 1.94337 1.93090 1.71369 1.64473 1.88919 0.90388 0.81380 0.85041 0.88152 0.88324 0.88160 0.87393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.16 13.94 55.54 0.77 -20.39 15 2 C 0.09 2.25 5.50 -17.35 -0.10 2.15 15 3 Si 0.90 19.61 24.52 -169.99 -4.17 15.44 15 4 H -0.27 -5.47 6.70 56.52 0.38 -5.09 15 5 H -0.28 -6.02 7.11 56.52 0.40 -5.61 15 6 H -0.25 -5.53 6.53 56.52 0.37 -5.16 15 7 C -0.43 -11.54 9.41 -37.76 -0.36 -11.90 15 8 H 0.10 2.94 6.24 -52.49 -0.33 2.61 15 9 C 0.04 1.04 5.46 -106.83 -0.58 0.45 15 10 C -0.03 -0.76 9.26 -16.80 -0.16 -0.92 15 11 N -0.26 -5.99 11.85 30.97 0.37 -5.62 15 12 N -0.34 -7.35 3.91 -49.75 -0.19 -7.54 15 13 C 0.10 1.72 5.77 -67.89 -0.39 1.33 15 14 C -0.19 -2.65 10.45 -26.73 -0.28 -2.93 15 15 C -0.17 -2.42 10.18 -26.69 -0.27 -2.69 15 16 C -0.21 -4.99 6.50 -81.03 -0.53 -5.51 15 17 C 0.56 12.18 3.36 36.01 0.12 12.31 15 18 F -0.19 -4.02 17.30 2.25 0.04 -3.99 15 19 F -0.17 -3.81 14.97 2.25 0.03 -3.78 15 20 F -0.20 -3.81 15.16 2.25 0.03 -3.78 15 21 H 0.29 6.75 8.30 -40.82 -0.34 6.41 15 22 H 0.17 3.75 4.27 -52.49 -0.22 3.53 15 23 H 0.13 2.10 7.10 -51.93 -0.37 1.73 15 24 H 0.10 1.16 8.14 -51.93 -0.42 0.74 15 25 H 0.10 1.55 8.14 -51.93 -0.42 1.12 15 26 H 0.10 1.11 8.14 -51.93 -0.42 0.69 15 27 H 0.11 1.66 7.81 -51.93 -0.41 1.25 15 LS Contribution 246.02 15.07 3.71 3.71 Total: -1.00 -27.69 246.02 -3.73 -31.42 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -1.78 Total: 2.22 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -2.54 Total: -7.70 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: 0.95 Total: -33.55 kcal Atomic # 9 Polarization: -11.65 SS G_CDS: 0.11 Total: -11.54 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -4.17 Total: 15.44 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -27.69 -3.73 -31.42 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000205593373.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.638 kcal (2) G-P(sol) polarization free energy of solvation -27.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds