Wall clock time and date at job start Mon Mar 30 2020 06:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31022 * 1 3 3 Si 1.86800 * 120.00053 * 2 1 4 4 H 1.48504 * 109.47038 * 271.95189 * 3 2 1 5 5 H 1.48498 * 109.47244 * 31.95090 * 3 2 1 6 6 H 1.48502 * 109.47353 * 151.95668 * 3 2 1 7 7 C 1.39693 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00247 * 343.89576 * 7 2 1 9 9 C 1.41600 * 119.99922 * 163.89424 * 7 2 1 10 10 C 1.41885 * 126.55729 * 341.29433 * 9 7 2 11 11 N 1.30322 * 108.04389 * 180.02562 * 10 9 7 12 12 N 1.39874 * 109.23381 * 0.02562 * 11 10 9 13 13 C 1.46499 * 125.67638 * 179.97438 * 12 11 10 14 14 C 1.53001 * 117.49797 * 300.02849 * 13 12 11 15 15 C 1.52998 * 60.03405 * 107.47827 * 14 13 12 16 16 C 1.34498 * 108.64688 * 0.24155 * 12 11 10 17 17 C 1.50706 * 126.40600 * 179.72091 * 16 12 11 18 18 F 1.39898 * 109.47018 * 89.99550 * 17 16 12 19 19 F 1.39900 * 109.47205 * 209.99997 * 17 16 12 20 20 F 1.39900 * 109.46626 * 329.99826 * 17 16 12 21 21 H 0.97001 * 120.00029 * 359.97438 * 1 2 3 22 22 H 1.07996 * 125.97540 * 359.97438 * 10 9 7 23 23 H 1.08994 * 115.56820 * 154.33661 * 13 12 11 24 24 H 1.09005 * 117.49646 * 214.98099 * 14 13 12 25 25 H 1.09001 * 117.50142 * 359.97020 * 14 13 12 26 26 H 1.08992 * 117.50175 * 107.50233 * 15 14 13 27 27 H 1.09001 * 117.49578 * 252.52520 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6177 0.0000 4 1 2.4504 2.0702 -1.3993 5 1 1.4630 2.6404 0.7409 6 1 3.5619 1.4286 0.6582 7 6 2.0087 -1.2098 -0.0005 8 1 1.5005 -2.1269 0.2585 9 6 3.3830 -1.2337 -0.3407 10 6 4.0971 -0.2295 -1.0442 11 7 5.3349 -0.6204 -1.1599 12 7 5.4820 -1.8710 -0.5508 13 6 6.7252 -2.6419 -0.4719 14 6 7.3888 -3.0491 -1.7891 15 6 8.0145 -1.9522 -0.9252 16 6 4.2908 -2.2505 -0.0548 17 6 3.9945 -3.5346 0.6764 18 9 4.1935 -3.3465 2.0483 19 9 2.6662 -3.9074 0.4445 20 9 4.8490 -4.5417 0.2150 21 1 -0.4850 0.8400 0.0004 22 1 3.6864 0.6963 -1.4190 23 1 6.7941 -3.3393 0.3629 24 1 7.8941 -4.0144 -1.8207 25 1 6.9001 -2.7438 -2.7143 26 1 8.9313 -2.1958 -0.3886 27 1 7.9370 -0.9251 -1.2820 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000205593373.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:24 Heat of formation + Delta-G solvation = -66.150709 kcal Electronic energy + Delta-G solvation = -18335.584085 eV Core-core repulsion = 14873.512777 eV Total energy + Delta-G solvation = -3462.071308 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -51.04035 -48.58821 -48.51688 -41.77970 -37.94683 -35.47066 -32.57213 -32.10990 -28.10139 -25.74486 -24.31878 -23.34823 -21.85322 -21.51691 -19.47448 -19.37984 -19.26892 -18.37725 -16.98228 -16.55149 -15.98669 -15.70833 -15.63232 -15.27550 -15.10853 -14.99649 -14.77377 -14.71446 -14.52554 -13.87810 -13.46485 -13.15949 -12.90133 -12.62882 -12.46382 -11.98765 -11.71486 -11.56514 -11.33768 -11.15320 -10.17975 -9.52166 -8.83137 -6.37562 0.58381 1.22663 1.36224 1.43643 1.49559 1.76040 1.92984 2.12985 2.80369 2.98126 3.07112 3.30263 3.49882 3.60443 3.78052 3.98601 4.14750 4.56548 4.70071 4.72117 4.88544 5.02821 5.17117 5.21350 5.56922 6.23971 6.26009 6.48960 6.70498 6.90753 8.25690 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.024015 B = 0.010947 C = 0.008212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.645290 B = 2557.174945 C = 3408.914546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.051 3.949 3 Si 0.953 3.047 4 H -0.243 1.243 5 H -0.272 1.272 6 H -0.256 1.256 7 C -0.462 4.462 8 H 0.071 0.929 9 C 0.014 3.986 10 C -0.048 4.048 11 N -0.261 5.261 12 N -0.327 5.327 13 C 0.050 3.950 14 C -0.167 4.167 15 C -0.149 4.149 16 C -0.206 4.206 17 C 0.564 3.436 18 F -0.185 7.185 19 F -0.175 7.175 20 F -0.178 7.178 21 H 0.295 0.705 22 H 0.181 0.819 23 H 0.145 0.855 24 H 0.135 0.865 25 H 0.083 0.917 26 H 0.139 0.861 27 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.810 -2.815 -0.641 12.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.163 4.163 3 Si 0.776 3.224 4 H -0.168 1.168 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.494 4.494 8 H 0.090 0.910 9 C 0.004 3.996 10 C -0.234 4.234 11 N -0.085 5.085 12 N -0.117 5.117 13 C -0.052 4.052 14 C -0.205 4.205 15 C -0.186 4.186 16 C -0.326 4.326 17 C 0.508 3.492 18 F -0.166 7.166 19 F -0.157 7.157 20 F -0.159 7.159 21 H 0.105 0.895 22 H 0.197 0.803 23 H 0.162 0.838 24 H 0.153 0.847 25 H 0.101 0.899 26 H 0.157 0.843 27 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 12.726 -2.563 -1.016 13.021 hybrid contribution -1.273 0.129 0.490 1.370 sum 11.453 -2.434 -0.526 11.721 Atomic orbital electron populations 1.69757 1.08897 1.31408 1.37443 1.26614 0.95372 1.03726 0.90634 0.85790 0.79336 0.76908 0.80332 1.16819 1.19844 1.18059 1.18971 0.91743 0.96377 1.42336 0.91048 1.18101 0.93667 0.91548 0.96321 1.23928 0.91950 1.02018 1.05456 1.76328 1.19479 0.95708 1.16958 1.46784 1.05921 1.13530 1.45453 1.22134 0.81637 0.99601 1.01853 1.23494 1.02260 1.01239 0.93499 1.23366 0.94577 0.98521 1.02156 1.20316 0.89576 1.01250 1.21475 1.16833 0.73781 0.82179 0.76390 1.93166 1.94774 1.95346 1.33324 1.93151 1.36089 1.92042 1.94402 1.93121 1.70612 1.63505 1.88707 0.89481 0.80254 0.83753 0.84655 0.89871 0.84316 0.88733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -45.66 13.94 21.79 0.30 -45.35 15 2 C 0.05 2.69 5.50 85.17 0.47 3.15 15 3 Si 0.95 40.30 24.52 68.60 1.68 41.98 15 4 H -0.24 -9.32 6.70 99.48 0.67 -8.65 15 5 H -0.27 -10.86 7.11 99.48 0.71 -10.15 15 6 H -0.26 -11.20 6.53 99.48 0.65 -10.55 15 7 C -0.46 -25.72 9.41 23.45 0.22 -25.49 15 8 H 0.07 4.29 6.24 -2.91 -0.02 4.27 15 9 C 0.01 0.73 5.46 -21.30 -0.12 0.62 15 10 C -0.05 -2.24 9.26 85.82 0.79 -1.45 15 11 N -0.26 -11.55 11.85 -55.94 -0.66 -12.22 15 12 N -0.33 -13.75 3.91 -311.30 -1.22 -14.97 15 13 C 0.05 1.58 5.77 45.02 0.26 1.84 15 14 C -0.17 -4.12 10.45 30.59 0.32 -3.80 15 15 C -0.15 -3.57 10.18 30.62 0.31 -3.26 15 16 C -0.21 -9.68 6.50 42.40 0.28 -9.41 15 17 C 0.56 24.22 3.36 71.24 0.24 24.46 15 18 F -0.18 -7.71 17.30 44.97 0.78 -6.94 15 19 F -0.18 -8.15 14.97 44.97 0.67 -7.47 15 20 F -0.18 -6.55 15.16 44.97 0.68 -5.87 15 21 H 0.29 14.18 8.30 -92.71 -0.77 13.41 15 22 H 0.18 7.80 4.27 -2.91 -0.01 7.79 15 23 H 0.15 4.11 7.10 -2.39 -0.02 4.09 15 24 H 0.14 2.43 8.14 -2.38 -0.02 2.41 15 25 H 0.08 2.37 8.14 -2.39 -0.02 2.35 15 26 H 0.14 2.30 8.14 -2.39 -0.02 2.28 15 27 H 0.09 2.59 7.81 -2.39 -0.02 2.58 15 Total: -1.00 -60.48 246.02 6.14 -54.34 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: 1.13 Total: 9.82 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: 2.77 Total: -13.33 kcal Atomic # 7 Polarization: -70.96 SS G_CDS: -1.58 Total: -72.54 kcal Atomic # 9 Polarization: -22.41 SS G_CDS: 2.13 Total: -20.27 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 1.68 Total: 41.98 kcal Total: -60.48 6.14 -54.34 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000205593373.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.811 kcal (2) G-P(sol) polarization free energy of solvation -60.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds