Wall clock time and date at job start Mon Mar 30 2020 06:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86794 * 119.99842 * 2 1 4 4 H 1.48506 * 109.47336 * 275.41338 * 3 2 1 5 5 H 1.48497 * 109.47322 * 35.41461 * 3 2 1 6 6 H 1.48508 * 109.47345 * 155.41379 * 3 2 1 7 7 C 1.39935 * 120.00049 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99880 * 341.72610 * 7 2 1 9 9 C 1.41399 * 120.00297 * 161.73430 * 7 2 1 10 10 C 1.40768 * 120.21595 * 330.19139 * 9 7 2 11 11 C 1.37626 * 119.85808 * 180.02562 * 10 9 7 12 12 C 1.38561 * 120.30605 * 359.72506 * 11 10 9 13 13 C 1.39116 * 120.44039 * 0.55129 * 12 11 10 14 14 O 1.35902 * 119.93251 * 179.71646 * 13 12 11 15 15 C 1.42906 * 116.99899 * 359.73335 * 14 13 12 16 16 C 1.52992 * 109.47015 * 179.97438 * 15 14 13 17 17 F 1.39902 * 109.47462 * 59.99969 * 16 15 14 18 18 F 1.39901 * 109.47050 * 179.97438 * 16 15 14 19 19 F 1.39903 * 109.47384 * 299.99867 * 16 15 14 20 20 C 1.38136 * 120.13636 * 359.45132 * 13 12 11 21 21 H 0.96999 * 120.00114 * 359.97438 * 1 2 3 22 22 H 1.08003 * 120.07169 * 0.02562 * 10 9 7 23 23 H 1.08007 * 119.84626 * 180.02562 * 11 10 9 24 24 H 1.08006 * 119.77910 * 180.29413 * 12 11 10 25 25 H 1.09002 * 109.46957 * 59.99132 * 15 14 13 26 26 H 1.08998 * 109.46794 * 299.99776 * 15 14 13 27 27 H 1.07997 * 120.15556 * 180.24919 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3753 2.1125 -1.3939 5 1 1.5016 2.6169 0.8113 6 1 3.5924 1.4099 0.5825 7 6 2.0080 -1.2119 -0.0005 8 1 1.5088 -2.1237 0.2923 9 6 3.3685 -1.2426 -0.3843 10 6 3.8631 -0.3103 -1.3159 11 6 5.1885 -0.3472 -1.6846 12 6 6.0399 -1.2944 -1.1389 13 6 5.5633 -2.2254 -0.2216 14 8 6.4062 -3.1535 0.3029 15 6 7.7654 -3.1177 -0.1371 16 6 8.5556 -4.2285 0.5574 17 9 7.9947 -5.4697 0.2379 18 9 9.8861 -4.1938 0.1262 19 9 8.5088 -4.0382 1.9426 20 6 4.2363 -2.2050 0.1615 21 1 -0.4850 0.8400 0.0004 22 1 3.2038 0.4325 -1.7403 23 1 5.5678 0.3685 -2.3990 24 1 7.0796 -1.3127 -1.4307 25 1 8.2026 -2.1507 0.1121 26 1 7.8019 -3.2655 -1.2164 27 1 3.8669 -2.9250 0.8766 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215339775.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:01 Heat of formation + Delta-G solvation = -178.757382 kcal Electronic energy + Delta-G solvation = -17264.524950 eV Core-core repulsion = 13765.277899 eV Total energy + Delta-G solvation = -3499.247051 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.13663 -47.70478 -47.57070 -39.30114 -36.79534 -33.56760 -30.69810 -30.43395 -28.40173 -25.41325 -23.49890 -21.57204 -20.72424 -18.85132 -18.64455 -17.84049 -17.58527 -16.35607 -15.49784 -15.43758 -14.69545 -14.57905 -14.48048 -14.38520 -14.05314 -13.76224 -13.76149 -13.33731 -12.83915 -12.42022 -12.21531 -11.96616 -11.60579 -11.29102 -10.99279 -10.62847 -10.27716 -9.94588 -9.66566 -9.27787 -7.85419 -7.34173 -7.05832 -4.63533 2.42201 2.44831 2.56059 3.04839 3.16059 3.26301 3.30492 3.77820 3.90883 3.95915 4.36644 4.48178 5.00894 5.01690 5.29668 5.75183 5.94420 6.28667 6.47812 6.62076 6.77862 7.23183 7.28827 7.40884 7.55424 7.76772 8.12510 8.27279 8.51611 8.68017 9.95743 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.046945 B = 0.005336 C = 0.005112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.296620 B = 5246.086796 C = 5476.264832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.085 3.915 3 Si 0.914 3.086 4 H -0.269 1.269 5 H -0.290 1.290 6 H -0.243 1.243 7 C -0.441 4.441 8 H 0.094 0.906 9 C 0.119 3.881 10 C -0.258 4.258 11 C -0.047 4.047 12 C -0.326 4.326 13 C 0.147 3.853 14 O -0.311 6.311 15 C 0.021 3.979 16 C 0.462 3.538 17 F -0.176 7.176 18 F -0.178 7.178 19 F -0.176 7.176 20 C -0.232 4.232 21 H 0.287 0.713 22 H 0.103 0.897 23 H 0.098 0.902 24 H 0.100 0.900 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.961 -2.372 -0.710 13.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.135 4.135 3 Si 0.741 3.259 4 H -0.195 1.195 5 H -0.217 1.217 6 H -0.166 1.166 7 C -0.468 4.468 8 H 0.112 0.888 9 C 0.116 3.884 10 C -0.277 4.277 11 C -0.065 4.065 12 C -0.346 4.346 13 C 0.104 3.896 14 O -0.226 6.226 15 C -0.057 4.057 16 C 0.408 3.592 17 F -0.157 7.157 18 F -0.160 7.160 19 F -0.157 7.157 20 C -0.252 4.252 21 H 0.098 0.902 22 H 0.121 0.879 23 H 0.117 0.883 24 H 0.118 0.882 25 H 0.120 0.880 26 H 0.120 0.880 27 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 12.633 -2.461 -0.533 12.882 hybrid contribution 0.510 0.691 -0.115 0.867 sum 13.143 -1.770 -0.647 13.278 Atomic orbital electron populations 1.69687 1.08172 1.30557 1.33970 1.26195 0.94745 1.01914 0.90687 0.86263 0.81346 0.79429 0.78893 1.19526 1.21720 1.16634 1.19509 0.92847 0.96338 1.38144 0.88798 1.17451 0.92534 0.89669 0.88792 1.21036 0.95748 1.05656 1.05247 1.20371 0.93378 0.95927 0.96832 1.20387 0.99182 1.04885 1.10102 1.18720 0.89264 0.87990 0.93598 1.85978 1.16649 1.54101 1.65872 1.23557 0.84738 0.97057 1.00309 1.20225 0.77990 0.83329 0.77655 1.93217 1.84807 1.45243 1.92438 1.93191 1.36450 1.96604 1.89736 1.93217 1.96190 1.95071 1.31221 1.20284 0.89580 1.07242 1.08125 0.90200 0.87893 0.88340 0.88231 0.88019 0.87984 0.87116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.78 13.93 55.55 0.77 -20.00 15 2 C 0.08 2.16 5.40 -17.34 -0.09 2.07 15 3 Si 0.91 20.21 24.52 -169.99 -4.17 16.05 15 4 H -0.27 -5.73 6.71 56.52 0.38 -5.35 15 5 H -0.29 -6.17 7.11 56.52 0.40 -5.77 15 6 H -0.24 -5.53 6.86 56.52 0.39 -5.14 15 7 C -0.44 -11.69 9.57 -37.74 -0.36 -12.05 15 8 H 0.09 2.60 8.06 -52.49 -0.42 2.18 15 9 C 0.12 2.97 5.10 -106.85 -0.55 2.43 15 10 C -0.26 -6.03 7.17 -38.85 -0.28 -6.31 15 11 C -0.05 -0.97 10.02 -39.69 -0.40 -1.36 15 12 C -0.33 -6.42 9.05 -39.14 -0.35 -6.77 15 13 C 0.15 3.11 6.67 -39.29 -0.26 2.85 15 14 O -0.31 -5.80 10.02 -19.43 -0.19 -5.99 15 15 C 0.02 0.29 4.70 37.15 0.17 0.46 15 16 C 0.46 6.06 3.32 37.15 0.12 6.18 15 17 F -0.18 -2.51 17.26 2.25 0.04 -2.47 15 18 F -0.18 -2.09 17.32 2.25 0.04 -2.05 15 19 F -0.18 -2.52 17.26 2.25 0.04 -2.48 15 20 C -0.23 -5.49 9.73 -38.73 -0.38 -5.86 15 21 H 0.29 6.72 8.30 -40.82 -0.34 6.38 15 22 H 0.10 2.38 4.73 -52.48 -0.25 2.13 15 23 H 0.10 1.73 8.06 -52.48 -0.42 1.31 15 24 H 0.10 1.61 6.27 -52.48 -0.33 1.28 15 25 H 0.10 1.22 7.64 -51.93 -0.40 0.82 15 26 H 0.10 1.22 7.67 -51.93 -0.40 0.82 15 27 H 0.11 2.56 8.06 -52.49 -0.42 2.13 15 LS Contribution 250.47 15.07 3.77 3.77 Total: -1.00 -26.86 250.47 -3.88 -30.74 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -1.81 Total: 0.80 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: -2.37 Total: -18.36 kcal Atomic # 7 Polarization: -20.78 SS G_CDS: 0.77 Total: -20.00 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: -0.19 Total: -5.99 kcal Atomic # 9 Polarization: -7.12 SS G_CDS: 0.12 Total: -7.01 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.17 Total: 16.05 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -26.86 -3.88 -30.74 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215339775.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.014 kcal (2) G-P(sol) polarization free energy of solvation -26.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds