Wall clock time and date at job start Mon Mar 30 2020 06:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30863 * 1 3 3 Si 1.86796 * 120.00102 * 2 1 4 4 H 1.48506 * 109.46955 * 85.18968 * 3 2 1 5 5 H 1.48501 * 109.47155 * 205.18604 * 3 2 1 6 6 H 1.48498 * 109.47292 * 325.19041 * 3 2 1 7 7 C 1.39937 * 119.99951 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00378 * 197.15139 * 7 2 1 9 9 C 1.41159 * 119.99986 * 17.14508 * 7 2 1 10 10 C 1.40719 * 120.28966 * 25.30600 * 9 7 2 11 11 C 1.36486 * 119.93028 * 179.97438 * 10 9 7 12 12 C 1.38826 * 120.53659 * 0.02562 * 11 10 9 13 13 C 1.38304 * 120.59159 * 359.97438 * 12 11 10 14 14 C 1.38441 * 120.05062 * 359.74457 * 13 12 11 15 15 O 1.35642 * 120.26917 * 180.25623 * 14 13 12 16 16 C 1.42905 * 116.99750 * 0.27164 * 15 14 13 17 17 C 1.52999 * 109.47054 * 179.97438 * 16 15 14 18 18 F 1.39897 * 109.46977 * 60.00428 * 17 16 15 19 19 F 1.39909 * 109.46972 * 179.97438 * 17 16 15 20 20 F 1.39896 * 109.47539 * 300.00332 * 17 16 15 21 21 H 0.97001 * 120.00215 * 359.97438 * 1 2 3 22 22 H 1.08001 * 120.03267 * 359.95429 * 10 9 7 23 23 H 1.08000 * 119.73161 * 180.02562 * 11 10 9 24 24 H 1.07995 * 119.70308 * 179.97438 * 12 11 10 25 25 H 1.08001 * 119.97161 * 180.02562 * 13 12 11 26 26 H 1.09004 * 109.47112 * 300.00346 * 16 15 14 27 27 H 1.09001 * 109.46855 * 60.00315 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.3885 2.1051 1.3952 5 1 3.5874 1.4129 -0.5958 6 1 1.4947 2.6212 -0.7992 7 6 2.0083 -1.2119 -0.0005 8 1 3.0523 -1.2329 0.2753 9 6 1.3495 -2.4070 -0.3615 10 6 0.2207 -2.3697 -1.2009 11 6 -0.4103 -3.5297 -1.5456 12 6 0.0518 -4.7510 -1.0742 13 6 1.1592 -4.8132 -0.2480 14 6 1.8214 -3.6521 0.1124 15 8 2.9110 -3.7084 0.9182 16 6 3.3275 -5.0032 1.3565 17 6 4.5629 -4.8667 2.2488 18 9 4.2503 -4.0764 3.3601 19 9 4.9703 -6.1343 2.6784 20 9 5.5972 -4.2645 1.5245 21 1 -0.4850 0.8400 0.0004 22 1 -0.1461 -1.4239 -1.5716 23 1 -1.2761 -3.4974 -2.1904 24 1 -0.4580 -5.6607 -1.3551 25 1 1.5103 -5.7688 0.1126 26 1 2.5214 -5.4726 1.9205 27 1 3.5715 -5.6188 0.4907 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215339843.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:00 Heat of formation + Delta-G solvation = -190.901575 kcal Electronic energy + Delta-G solvation = -17631.401932 eV Core-core repulsion = 14131.628270 eV Total energy + Delta-G solvation = -3499.773662 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -51.16421 -48.70100 -48.64351 -40.59616 -38.05574 -35.51404 -32.07410 -31.10798 -29.98764 -27.05684 -24.79365 -22.75519 -22.43186 -19.80998 -19.68123 -19.31937 -18.57982 -18.19441 -16.99426 -16.55101 -16.01138 -15.88496 -15.52716 -15.43774 -15.08788 -14.82202 -14.80122 -14.75268 -14.42171 -13.94568 -13.57145 -13.13991 -12.85860 -12.73147 -12.62544 -12.14744 -11.85661 -11.65233 -11.32223 -11.04568 -9.41357 -8.95988 -8.59901 -6.25583 0.92511 1.05171 1.38244 1.40756 1.48047 1.53934 2.22622 2.26219 2.73319 2.77657 2.94974 3.46682 3.66892 4.02365 4.05612 4.34025 4.51019 4.64673 5.06568 5.18422 5.39952 5.41011 5.79739 5.84779 6.15536 6.27701 6.42439 6.74000 6.89843 7.10777 8.34387 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.020143 B = 0.008480 C = 0.006300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.704220 B = 3300.959738 C = 4443.200046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.036 3.964 3 Si 0.976 3.024 4 H -0.265 1.265 5 H -0.263 1.263 6 H -0.261 1.261 7 C -0.485 4.485 8 H 0.067 0.933 9 C 0.064 3.936 10 C -0.165 4.165 11 C -0.130 4.130 12 C -0.206 4.206 13 C -0.171 4.171 14 C -0.009 4.009 15 O -0.319 6.319 16 C 0.012 3.988 17 C 0.469 3.531 18 F -0.186 7.186 19 F -0.166 7.166 20 F -0.185 7.185 21 H 0.288 0.712 22 H 0.108 0.892 23 H 0.115 0.885 24 H 0.129 0.871 25 H 0.137 0.863 26 H 0.117 0.883 27 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.573 -7.627 1.839 9.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.178 4.178 3 Si 0.797 3.203 4 H -0.190 1.190 5 H -0.187 1.187 6 H -0.185 1.185 7 C -0.515 4.515 8 H 0.086 0.914 9 C 0.061 3.939 10 C -0.185 4.185 11 C -0.149 4.149 12 C -0.225 4.225 13 C -0.190 4.190 14 C -0.053 4.053 15 O -0.235 6.235 16 C -0.065 4.065 17 C 0.415 3.585 18 F -0.168 7.168 19 F -0.148 7.148 20 F -0.166 7.166 21 H 0.099 0.901 22 H 0.126 0.874 23 H 0.133 0.867 24 H 0.147 0.853 25 H 0.155 0.845 26 H 0.135 0.865 27 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.510 -7.311 1.941 8.807 hybrid contribution 0.369 0.662 0.243 0.795 sum 4.879 -6.649 2.184 8.531 Atomic orbital electron populations 1.69861 1.08686 1.30481 1.36186 1.26646 0.95506 1.04173 0.91503 0.85278 0.79230 0.76443 0.79308 1.19030 1.18659 1.18521 1.19548 0.97806 0.92308 1.41799 0.91441 1.17433 0.93500 0.90806 0.92147 1.20863 0.98925 0.97871 1.00849 1.20741 0.99963 0.92987 1.01190 1.20630 0.99875 0.97228 1.04755 1.21021 0.98982 0.95904 1.03101 1.19226 0.91466 0.95171 0.99445 1.85879 1.45339 1.27265 1.65009 1.23813 0.94553 0.88139 1.00012 1.20141 0.85143 0.73650 0.79558 1.93196 1.92882 1.75136 1.55542 1.93207 1.91449 1.39673 1.90448 1.93191 1.61912 1.83988 1.77550 0.90098 0.87449 0.86734 0.85321 0.84519 0.86510 0.86208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.45 10.97 21.83 0.24 -43.21 15 2 C 0.04 1.86 5.15 85.25 0.44 2.30 15 3 Si 0.98 39.58 29.59 68.60 2.03 41.61 15 4 H -0.27 -10.46 7.11 99.48 0.71 -9.76 15 5 H -0.26 -10.63 7.11 99.48 0.71 -9.92 15 6 H -0.26 -9.85 7.11 99.48 0.71 -9.15 15 7 C -0.48 -27.05 8.72 23.40 0.20 -26.85 15 8 H 0.07 3.81 7.66 -2.91 -0.02 3.79 15 9 C 0.06 3.46 5.58 -21.20 -0.12 3.34 15 10 C -0.17 -8.55 8.64 22.47 0.19 -8.36 15 11 C -0.13 -5.77 9.97 22.00 0.22 -5.55 15 12 C -0.21 -8.18 10.04 22.43 0.23 -7.95 15 13 C -0.17 -6.86 9.04 22.33 0.20 -6.65 15 14 C -0.01 -0.45 6.72 23.08 0.16 -0.30 15 15 O -0.32 -14.01 9.32 -89.56 -0.83 -14.85 15 16 C 0.01 0.36 4.70 71.98 0.34 0.70 15 17 C 0.47 13.86 3.32 71.98 0.24 14.10 15 18 F -0.19 -6.21 17.26 44.97 0.78 -5.43 15 19 F -0.17 -4.14 17.32 44.97 0.78 -3.36 15 20 F -0.18 -6.04 17.26 44.97 0.78 -5.26 15 21 H 0.29 13.67 8.30 -92.71 -0.77 12.90 15 22 H 0.11 5.81 6.19 -2.91 -0.02 5.79 15 23 H 0.11 4.40 8.06 -2.91 -0.02 4.37 15 24 H 0.13 4.15 8.06 -2.91 -0.02 4.12 15 25 H 0.14 4.22 6.31 -2.91 -0.02 4.20 15 26 H 0.12 3.01 7.66 -2.38 -0.02 2.99 15 27 H 0.12 3.00 7.68 -2.39 -0.02 2.98 15 Total: -1.00 -60.47 254.80 7.07 -53.39 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: 1.21 Total: 12.32 kcal Atomic # 6 Polarization: -37.32 SS G_CDS: 2.10 Total: -35.22 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: 0.24 Total: -43.21 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -0.83 Total: -14.85 kcal Atomic # 9 Polarization: -16.38 SS G_CDS: 2.33 Total: -14.05 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 2.03 Total: 41.61 kcal Total: -60.47 7.07 -53.39 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215339843.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.508 kcal (2) G-P(sol) polarization free energy of solvation -60.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds