Wall clock time and date at job start Mon Mar 30 2020 06:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35700 * 117.00003 * 2 1 4 4 C 1.38666 * 120.27036 * 270.23395 * 3 2 1 5 5 F 1.35099 * 119.99475 * 0.02562 * 4 3 2 6 6 C 1.38449 * 120.00597 * 180.30039 * 4 3 2 7 7 C 1.38832 * 120.57183 * 359.71807 * 6 4 3 8 8 C 1.50692 * 119.72418 * 180.02562 * 7 6 4 9 9 F 1.39903 * 109.47253 * 30.01947 * 8 7 6 10 10 F 1.39903 * 109.47456 * 150.02189 * 8 7 6 11 11 C 1.36461 * 120.55222 * 0.02562 * 7 6 4 12 12 C 1.40768 * 119.97361 * 359.97438 * 11 7 6 13 13 C 1.41160 * 120.28067 * 180.02562 * 12 11 7 14 14 H 1.08002 * 120.00068 * 154.74504 * 13 12 11 15 15 C 1.39931 * 119.99958 * 334.74651 * 13 12 11 16 16 N 1.30864 * 120.00121 * 342.72571 * 15 13 12 17 17 Si 1.86805 * 119.99959 * 162.72501 * 15 13 12 18 18 H 1.48501 * 109.46916 * 265.75788 * 17 15 13 19 19 H 1.48504 * 109.46834 * 25.75548 * 17 15 13 20 20 H 1.48491 * 109.47204 * 145.75351 * 17 15 13 21 21 H 1.09003 * 109.47220 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47273 * 300.00188 * 1 2 3 23 23 H 1.08998 * 109.47499 * 60.00341 * 1 2 3 24 24 H 1.08003 * 119.71640 * 179.73855 * 6 4 3 25 25 H 1.09008 * 109.46953 * 270.02038 * 8 7 6 26 26 H 1.07997 * 120.01501 * 180.02562 * 11 7 6 27 27 H 0.96995 * 119.99994 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2091 0.0000 4 6 2.3580 1.8341 -1.1976 5 9 2.0491 1.2395 -2.3707 6 6 2.9922 3.0648 -1.1912 7 6 3.3150 3.6866 0.0073 8 6 4.0047 5.0264 -0.0080 9 9 3.6240 5.7338 -1.1535 10 9 3.6396 5.7520 1.1310 11 6 3.0130 3.0947 1.1992 12 6 2.3684 1.8435 1.2197 13 6 2.0525 1.2256 2.4490 14 1 1.2388 0.5176 2.5041 15 6 2.7935 1.5306 3.5961 16 7 3.9638 2.1058 3.4855 17 14 2.1123 1.1165 5.2856 18 1 1.4063 2.3003 5.8383 19 1 1.1613 -0.0183 5.1713 20 1 3.2277 0.7385 6.1900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 3.2376 3.5455 -2.1268 25 1 5.0847 4.8790 -0.0142 26 1 3.2678 3.5864 2.1264 27 1 4.4776 2.3168 4.2806 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215755893.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:23 Heat of formation + Delta-G solvation = -189.567909 kcal Electronic energy + Delta-G solvation = -17871.779556 eV Core-core repulsion = 14372.063726 eV Total energy + Delta-G solvation = -3499.715830 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.88734 -49.69567 -47.90207 -40.22518 -38.01708 -35.77261 -32.15784 -31.19899 -28.26015 -27.46567 -26.01598 -23.35758 -22.21100 -19.74851 -18.42923 -18.38382 -18.26534 -17.76211 -17.38363 -16.76244 -16.56295 -16.45352 -15.74614 -15.29986 -14.86677 -14.69062 -14.33397 -14.26846 -13.92700 -13.61403 -13.53444 -12.98438 -12.72785 -12.58131 -12.48132 -12.41938 -11.99008 -11.47516 -11.14973 -10.63904 -9.60030 -9.36498 -8.82148 -6.52756 0.38714 0.64417 1.39064 1.46283 1.53223 2.15791 2.39740 2.87605 3.04365 3.28581 3.42004 3.65936 3.95895 4.14581 4.38102 4.48916 4.59486 4.71296 4.74274 4.86243 5.08023 5.26296 5.33978 5.67424 5.69318 6.02039 6.25135 6.52150 6.67538 7.00920 8.14215 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.017058 B = 0.011270 C = 0.007155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.042683 B = 2483.826412 C = 3912.431416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.337 6.337 3 C -0.075 4.075 4 C 0.096 3.904 5 F -0.154 7.154 6 C -0.246 4.246 7 C -0.131 4.131 8 C 0.322 3.678 9 F -0.208 7.208 10 F -0.210 7.210 11 C -0.141 4.141 12 C 0.085 3.915 13 C -0.456 4.456 14 H 0.084 0.916 15 C 0.037 3.963 16 N -0.800 5.800 17 Si 0.987 3.013 18 H -0.258 1.258 19 H -0.258 1.258 20 H -0.263 1.263 21 H 0.110 0.890 22 H 0.038 0.962 23 H 0.035 0.965 24 H 0.134 0.866 25 H 0.153 0.847 26 H 0.129 0.871 27 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.890 2.265 -0.328 2.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.254 6.254 3 C -0.121 4.121 4 C 0.077 3.923 5 F -0.132 7.132 6 C -0.266 4.266 7 C -0.132 4.132 8 C 0.269 3.731 9 F -0.189 7.189 10 F -0.192 7.192 11 C -0.161 4.161 12 C 0.082 3.918 13 C -0.483 4.483 14 H 0.102 0.898 15 C -0.181 4.181 16 N -0.424 5.424 17 Si 0.807 3.193 18 H -0.183 1.183 19 H -0.182 1.182 20 H -0.187 1.187 21 H 0.129 0.871 22 H 0.057 0.943 23 H 0.054 0.946 24 H 0.152 0.848 25 H 0.170 0.830 26 H 0.146 0.854 27 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.617 2.183 -0.241 2.282 hybrid contribution -0.503 -0.073 0.261 0.571 sum -1.120 2.110 0.020 2.389 Atomic orbital electron populations 1.23092 0.80289 1.03540 0.99731 1.85939 1.19999 1.25263 1.94189 1.19013 1.11612 0.90321 0.91157 1.17953 1.01915 0.92771 0.79692 1.91342 1.91565 1.83932 1.46397 1.20060 1.12128 0.96214 0.98236 1.19823 1.02828 0.96436 0.94114 1.20482 1.00289 0.82300 0.70078 1.92932 1.93829 1.80683 1.51448 1.92940 1.94176 1.79745 1.52313 1.20857 1.03106 0.95297 0.96828 1.17966 0.90725 0.90956 0.92172 1.19752 1.14466 1.21507 0.92571 0.89797 1.26852 0.93578 0.92409 1.05283 1.69794 1.09215 1.28969 1.34390 0.85098 0.79215 0.79880 0.75135 1.18284 1.18202 1.18737 0.87142 0.94279 0.94614 0.84770 0.82977 0.85378 0.89033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.04 10.95 113.37 1.24 2.29 15 2 O -0.34 -16.16 9.60 -90.20 -0.87 -17.03 15 3 C -0.08 -3.79 5.77 23.11 0.13 -3.66 15 4 C 0.10 4.56 7.30 22.42 0.16 4.73 15 5 F -0.15 -6.94 17.11 44.97 0.77 -6.17 15 6 C -0.25 -10.71 9.37 22.46 0.21 -10.50 15 7 C -0.13 -5.64 5.70 -20.14 -0.11 -5.76 15 8 C 0.32 11.24 5.64 71.23 0.40 11.65 15 9 F -0.21 -7.16 16.46 44.97 0.74 -6.42 15 10 F -0.21 -7.92 16.43 44.97 0.74 -7.18 15 11 C -0.14 -6.89 7.97 22.47 0.18 -6.71 15 12 C 0.09 4.42 5.58 -21.21 -0.12 4.30 15 13 C -0.46 -23.05 8.71 23.40 0.20 -22.85 15 14 H 0.08 4.17 7.05 -2.91 -0.02 4.15 15 15 C 0.04 1.73 5.14 85.25 0.44 2.16 15 16 N -0.80 -37.80 10.97 21.83 0.24 -37.56 15 17 Si 0.99 35.01 29.59 68.60 2.03 37.04 15 18 H -0.26 -8.86 7.11 99.48 0.71 -8.15 15 19 H -0.26 -9.07 7.11 99.48 0.71 -8.37 15 20 H -0.26 -8.82 7.11 99.48 0.71 -8.11 15 21 H 0.11 3.32 8.14 -2.39 -0.02 3.30 15 22 H 0.04 1.46 7.70 -2.39 -0.02 1.44 15 23 H 0.04 1.27 8.14 -2.39 -0.02 1.25 15 24 H 0.13 5.18 7.58 -2.91 -0.02 5.16 15 25 H 0.15 4.18 8.14 -2.38 -0.02 4.16 15 26 H 0.13 6.37 5.68 -2.91 -0.02 6.36 15 27 H 0.30 12.52 8.30 -92.71 -0.77 11.76 15 Total: -1.00 -56.34 254.36 7.61 -48.73 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 1.22 Total: 12.94 kcal Atomic # 6 Polarization: -27.09 SS G_CDS: 2.74 Total: -24.35 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.24 Total: -37.56 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: -0.87 Total: -17.03 kcal Atomic # 9 Polarization: -22.02 SS G_CDS: 2.25 Total: -19.77 kcal Atomic # 14 Polarization: 35.01 SS G_CDS: 2.03 Total: 37.04 kcal Total: -56.34 7.61 -48.73 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215755893.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.836 kcal (2) G-P(sol) polarization free energy of solvation -56.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds