Wall clock time and date at job start Mon Mar 30 2020 05:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36066 * 116.99818 * 2 1 4 4 C 1.38729 * 120.01702 * 270.25008 * 3 2 1 5 5 O 1.35766 * 120.25858 * 0.02952 * 4 3 2 6 6 C 1.41239 * 119.48874 * 180.29886 * 4 3 2 7 7 C 1.41113 * 120.23483 * 179.72556 * 6 4 3 8 8 H 1.08001 * 119.99548 * 25.07952 * 7 6 4 9 9 C 1.39883 * 119.99903 * 205.07573 * 7 6 4 10 10 N 1.30902 * 119.99927 * 26.52823 * 9 7 6 11 11 Si 1.86800 * 119.99860 * 206.51951 * 9 7 6 12 12 H 1.48498 * 109.47061 * 180.02562 * 11 9 7 13 13 H 1.48497 * 109.47328 * 300.00480 * 11 9 7 14 14 H 1.48502 * 109.46958 * 60.00813 * 11 9 7 15 15 C 1.40831 * 119.53167 * 359.45406 * 6 4 3 16 16 C 1.36495 * 120.02767 * 0.27179 * 15 6 4 17 17 Cl 1.73596 * 119.74267 * 180.02562 * 16 15 6 18 18 C 1.38927 * 120.02116 * 90.00046 * 3 2 1 19 19 F 1.35090 * 119.76446 * 359.97438 * 18 3 2 20 20 H 1.09008 * 109.46864 * 60.00279 * 1 2 3 21 21 H 1.08992 * 109.47253 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47391 * 300.00822 * 1 2 3 23 23 H 0.96707 * 113.99520 * 270.27894 * 5 4 3 24 24 H 0.97002 * 120.00335 * 5.88272 * 10 9 7 25 25 H 1.07999 * 119.98559 * 180.25394 * 15 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2124 0.0000 4 6 2.3571 1.8331 -1.2012 5 8 2.0463 1.2359 -2.3802 6 6 3.0040 3.0886 -1.1882 7 6 3.3322 3.7314 -2.4008 8 1 2.7711 3.5122 -3.2972 9 6 4.3842 4.6524 -2.4417 10 7 5.3674 4.5616 -1.5823 11 14 4.3861 6.0119 -3.7229 12 1 5.6019 6.8479 -3.5557 13 1 4.3814 5.4119 -5.0813 14 1 3.1767 6.8562 -3.5504 15 6 3.3140 3.6971 0.0434 16 6 2.9946 3.0715 1.2138 17 17 3.3795 3.8286 2.7279 18 6 2.3622 1.8317 1.2029 19 9 2.0532 1.2262 2.3703 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 2.7417 0.6582 -2.7237 24 1 5.4112 3.8078 -0.9733 25 1 3.8049 4.6589 0.0619 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215809831.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:12 Heat of formation + Delta-G solvation = -143.080931 kcal Electronic energy + Delta-G solvation = -15801.969303 eV Core-core repulsion = 12720.232885 eV Total energy + Delta-G solvation = -3081.736418 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.025 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.53921 -40.84869 -38.74319 -37.83209 -37.01572 -35.45893 -31.09558 -30.44662 -27.71562 -27.07562 -23.39826 -23.24931 -20.33417 -19.29561 -18.32949 -18.15903 -17.33285 -16.91677 -16.13651 -15.88563 -15.61511 -15.54835 -15.16858 -14.92334 -14.28948 -13.81003 -13.54516 -13.11540 -12.89468 -12.70935 -12.16172 -11.98962 -11.92843 -11.80662 -11.59911 -11.05360 -10.68806 -9.66425 -9.61212 -9.29818 -6.66498 0.18061 0.28734 1.06389 1.52959 1.56843 1.83771 2.21712 2.28131 2.76645 3.02320 3.36515 3.78298 4.28508 4.33174 4.44244 4.57680 4.61596 4.75722 5.01157 5.24535 5.36707 5.37993 5.65788 5.81116 6.26547 6.41050 6.58455 7.06653 7.81564 Molecular weight = 246.02amu Principal moments of inertia in cm(-1) A = 0.022247 B = 0.009987 C = 0.007191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.306317 B = 2803.070821 C = 3892.936573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.345 6.345 3 C 0.096 3.904 4 C -0.025 4.025 5 O -0.483 6.483 6 C 0.061 3.939 7 C -0.494 4.494 8 H 0.093 0.907 9 C 0.008 3.992 10 N -0.785 5.785 11 Si 1.117 2.883 12 H -0.270 1.270 13 H -0.253 1.253 14 H -0.262 1.262 15 C -0.197 4.197 16 C -0.009 4.009 17 Cl -0.070 7.070 18 C -0.076 4.076 19 F -0.150 7.150 20 H 0.046 0.954 21 H 0.124 0.876 22 H 0.040 0.960 23 H 0.382 0.618 24 H 0.290 0.710 25 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.534 -1.339 -0.728 3.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.262 6.262 3 C 0.051 3.949 4 C -0.072 4.072 5 O -0.292 6.292 6 C 0.057 3.943 7 C -0.519 4.519 8 H 0.111 0.889 9 C -0.213 4.213 10 N -0.405 5.405 11 Si 0.933 3.067 12 H -0.195 1.195 13 H -0.177 1.177 14 H -0.187 1.187 15 C -0.217 4.217 16 C -0.036 4.036 17 Cl -0.041 7.041 18 C -0.097 4.097 19 F -0.129 7.129 20 H 0.064 0.936 21 H 0.142 0.858 22 H 0.059 0.941 23 H 0.237 0.763 24 H 0.102 0.898 25 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.082 0.138 -0.946 3.227 hybrid contribution -0.461 -1.699 1.189 2.124 sum -3.542 -1.561 0.243 3.879 Atomic orbital electron populations 1.23139 0.77286 1.04698 1.00448 1.85882 1.21732 1.24201 1.94414 1.18657 0.99340 0.86382 0.90528 1.18389 1.11819 0.92935 0.84024 1.84655 1.44978 1.64424 1.35112 1.18004 0.91750 0.90971 0.93572 1.20798 1.14832 1.19822 0.96480 0.88932 1.28620 0.90377 1.01603 1.00665 1.70622 1.27223 1.28897 1.13771 0.82989 0.78077 0.72570 0.73099 1.19454 1.17741 1.18680 1.20584 1.10184 1.01111 0.89780 1.20339 1.02502 0.93169 0.87630 1.98290 1.93014 1.81298 1.31504 1.17012 1.16657 0.95032 0.80974 1.91317 1.92494 1.83218 1.45848 0.93566 0.85810 0.94079 0.76325 0.89763 0.85910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.21 11.13 113.37 1.26 2.48 15 2 O -0.34 -14.28 10.06 -80.31 -0.81 -15.09 15 3 C 0.10 4.41 5.74 22.55 0.13 4.54 15 4 C -0.03 -1.17 6.75 23.13 0.16 -1.01 15 5 O -0.48 -20.31 12.58 -76.94 -0.97 -21.28 15 6 C 0.06 3.01 5.30 -21.20 -0.11 2.90 15 7 C -0.49 -23.54 8.63 23.37 0.20 -23.33 15 8 H 0.09 4.34 7.72 -2.91 -0.02 4.32 15 9 C 0.01 0.34 4.90 85.23 0.42 0.76 15 10 N -0.78 -37.65 12.32 21.82 0.27 -37.38 15 11 Si 1.12 37.78 30.01 68.60 2.06 39.84 15 12 H -0.27 -9.08 7.11 99.48 0.71 -8.38 15 13 H -0.25 -7.81 7.11 99.48 0.71 -7.10 15 14 H -0.26 -8.51 7.11 99.48 0.71 -7.80 15 15 C -0.20 -9.44 7.68 22.50 0.17 -9.27 15 16 C -0.01 -0.40 6.28 22.09 0.14 -0.26 15 17 Cl -0.07 -2.79 28.57 -2.72 -0.08 -2.87 15 18 C -0.08 -3.52 7.30 22.66 0.17 -3.35 15 19 F -0.15 -6.76 16.64 44.97 0.75 -6.01 15 20 H 0.05 1.49 8.14 -2.38 -0.02 1.47 15 21 H 0.12 2.97 8.14 -2.39 -0.02 2.95 15 22 H 0.04 1.30 8.14 -2.39 -0.02 1.28 15 23 H 0.38 13.15 9.06 -74.05 -0.67 12.48 15 24 H 0.29 14.52 6.78 -92.71 -0.63 13.89 15 25 H 0.12 6.02 6.52 -2.91 -0.02 6.00 15 Total: -1.00 -54.72 249.72 4.48 -50.24 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 0.72 Total: 19.11 kcal Atomic # 6 Polarization: -29.09 SS G_CDS: 2.53 Total: -26.56 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.27 Total: -37.38 kcal Atomic # 8 Polarization: -34.59 SS G_CDS: -1.78 Total: -36.37 kcal Atomic # 9 Polarization: -6.76 SS G_CDS: 0.75 Total: -6.01 kcal Atomic # 14 Polarization: 37.78 SS G_CDS: 2.06 Total: 39.84 kcal Atomic # 17 Polarization: -2.79 SS G_CDS: -0.08 Total: -2.87 kcal Total: -54.72 4.48 -50.24 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215809831.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.837 kcal (2) G-P(sol) polarization free energy of solvation -54.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds