Wall clock time and date at job start Mon Mar 30 2020 05:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35711 * 116.99766 * 2 1 4 4 C 1.41427 * 120.21476 * 89.99916 * 3 2 1 5 5 C 1.41009 * 120.20872 * 359.97438 * 4 3 2 6 6 H 1.08001 * 119.99701 * 25.23738 * 5 4 3 7 7 C 1.39856 * 120.00307 * 205.23874 * 5 4 3 8 8 N 1.30935 * 119.99772 * 17.18586 * 7 5 4 9 9 Si 1.86798 * 120.00251 * 197.18809 * 7 5 4 10 10 H 1.48503 * 109.46723 * 265.18978 * 9 7 5 11 11 H 1.48493 * 109.47076 * 25.18675 * 9 7 5 12 12 H 1.48496 * 109.47236 * 145.19022 * 9 7 5 13 13 C 1.40807 * 119.58437 * 179.70038 * 4 3 2 14 14 C 1.36467 * 119.98313 * 0.27808 * 13 4 3 15 15 F 1.35105 * 119.78944 * 180.02562 * 14 13 4 16 16 C 1.39651 * 120.42501 * 359.97340 * 14 13 4 17 17 O 1.35752 * 119.78643 * 180.02562 * 16 14 13 18 18 C 1.38228 * 120.20843 * 270.21053 * 3 2 1 19 19 Cl 1.73594 * 120.00073 * 359.97438 * 18 3 2 20 20 H 1.09004 * 109.47387 * 60.00303 * 1 2 3 21 21 H 1.09004 * 109.47146 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47105 * 300.00192 * 1 2 3 23 23 H 0.96998 * 120.00029 * 179.97438 * 8 7 5 24 24 H 1.07995 * 120.00750 * 180.25047 * 13 4 3 25 25 H 0.96699 * 113.99946 * 89.99930 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 2.3682 1.8434 1.2221 5 6 2.0517 1.2235 2.4485 6 1 1.9516 0.1494 2.5006 7 6 1.8674 1.9995 3.5973 8 7 1.6531 3.2868 3.4904 9 14 1.9272 1.1996 5.2843 10 1 0.5489 0.8579 5.7191 11 1 2.7459 -0.0374 5.2169 12 1 2.5340 2.1424 6.2580 13 6 3.0130 3.0950 1.2067 14 6 3.3171 3.6909 0.0172 15 9 3.9363 4.8916 0.0069 16 6 2.9932 3.0670 -1.1895 17 8 3.3022 3.6711 -2.3653 18 6 2.3569 1.8309 -1.1946 19 17 1.9610 1.0646 -2.7011 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 1.5249 3.8249 4.2871 24 1 3.2665 3.5835 2.1358 25 1 4.1770 3.4416 -2.7074 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215810923.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:24 Heat of formation + Delta-G solvation = -137.217307 kcal Electronic energy + Delta-G solvation = -15814.211646 eV Core-core repulsion = 12732.729493 eV Total energy + Delta-G solvation = -3081.482152 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.025 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.71644 -40.53687 -38.71874 -37.35695 -37.05654 -35.16994 -31.15179 -30.53378 -27.88184 -26.65921 -23.61692 -22.81838 -19.77232 -19.46931 -18.16722 -17.81973 -17.43340 -16.75966 -16.29542 -16.05990 -15.59769 -15.23025 -15.12838 -14.70422 -14.05432 -13.64239 -13.43064 -12.99938 -12.89068 -12.74781 -12.27051 -12.10837 -11.89866 -11.80587 -11.41510 -11.05689 -10.61278 -9.48427 -9.30538 -8.86287 -6.56360 0.36978 0.43160 1.23428 1.39633 1.44232 1.56828 2.14244 2.30444 2.97663 3.24376 3.62110 3.72496 4.49236 4.57837 4.65117 4.69863 4.80850 4.94354 4.99873 5.16191 5.35960 5.59004 5.86691 6.18269 6.45241 6.60112 6.87738 7.00403 8.07527 Molecular weight = 246.02amu Principal moments of inertia in cm(-1) A = 0.024399 B = 0.009981 C = 0.007363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.320909 B = 2804.706539 C = 3801.635881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.325 6.325 3 C -0.031 4.031 4 C 0.097 3.903 5 C -0.441 4.441 6 H 0.095 0.905 7 C 0.036 3.964 8 N -0.800 5.800 9 Si 0.991 3.009 10 H -0.258 1.258 11 H -0.254 1.254 12 H -0.264 1.264 13 C -0.200 4.200 14 C 0.097 3.903 15 F -0.151 7.151 16 C -0.062 4.062 17 O -0.483 6.483 18 C -0.010 4.010 19 Cl -0.060 7.060 20 H 0.035 0.965 21 H 0.112 0.888 22 H 0.033 0.967 23 H 0.300 0.700 24 H 0.129 0.871 25 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.071 -3.399 -1.314 3.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.241 6.241 3 C -0.077 4.077 4 C 0.093 3.907 5 C -0.467 4.467 6 H 0.113 0.887 7 C -0.183 4.183 8 N -0.423 5.423 9 Si 0.810 3.190 10 H -0.183 1.183 11 H -0.177 1.177 12 H -0.188 1.188 13 C -0.220 4.220 14 C 0.077 3.923 15 F -0.130 7.130 16 C -0.110 4.110 17 O -0.292 6.292 18 C -0.037 4.037 19 Cl -0.031 7.031 20 H 0.054 0.946 21 H 0.130 0.870 22 H 0.052 0.948 23 H 0.111 0.889 24 H 0.147 0.853 25 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -0.632 -3.117 -1.270 3.425 hybrid contribution 0.351 0.255 0.346 0.555 sum -0.281 -2.863 -0.924 3.021 Atomic orbital electron populations 1.22999 0.80163 1.03398 0.99606 1.85941 1.19890 1.24273 1.94036 1.18256 1.07879 0.91640 0.89967 1.17781 0.89741 0.90477 0.92722 1.19817 1.38819 0.96130 0.91940 0.88671 1.26985 0.90685 0.94930 1.05716 1.69866 1.29750 1.08101 1.34621 0.85036 0.80003 0.79350 0.74622 1.18275 1.17749 1.18814 1.20880 1.05809 0.99519 0.95815 1.17643 0.98352 0.82203 0.94101 1.91359 1.80792 1.43326 1.97530 1.17271 1.14643 0.94481 0.84576 1.84834 1.39734 1.69684 1.34917 1.21225 1.03283 0.92679 0.86556 1.98267 1.92604 1.80834 1.31439 0.94640 0.86988 0.94826 0.88910 0.85292 0.76334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.18 11.13 113.37 1.26 2.44 15 2 O -0.32 -14.22 9.16 -90.32 -0.83 -15.05 15 3 C -0.03 -1.49 5.75 23.05 0.13 -1.36 15 4 C 0.10 4.88 5.58 -21.19 -0.12 4.76 15 5 C -0.44 -21.31 8.70 23.34 0.20 -21.10 15 6 H 0.10 4.49 7.65 -2.91 -0.02 4.47 15 7 C 0.04 1.61 5.14 85.22 0.44 2.05 15 8 N -0.80 -37.61 10.98 21.82 0.24 -37.37 15 9 Si 0.99 33.66 29.59 68.60 2.03 35.69 15 10 H -0.26 -8.42 7.11 99.48 0.71 -7.72 15 11 H -0.25 -8.54 7.11 99.48 0.71 -7.83 15 12 H -0.26 -8.58 7.11 99.48 0.71 -7.87 15 13 C -0.20 -10.06 8.58 22.48 0.19 -9.87 15 14 C 0.10 4.66 7.25 22.20 0.16 4.82 15 15 F -0.15 -6.99 17.09 44.97 0.77 -6.22 15 16 C -0.06 -2.83 6.72 22.80 0.15 -2.67 15 17 O -0.48 -19.19 12.78 -90.77 -1.16 -20.35 15 18 C -0.01 -0.43 6.34 22.46 0.14 -0.29 15 19 Cl -0.06 -2.29 28.03 -2.72 -0.08 -2.37 15 20 H 0.03 1.24 8.14 -2.38 -0.02 1.22 15 21 H 0.11 3.18 8.14 -2.38 -0.02 3.16 15 22 H 0.03 1.28 8.14 -2.39 -0.02 1.26 15 23 H 0.30 12.55 8.30 -92.71 -0.77 11.78 15 24 H 0.13 6.67 6.19 -2.91 -0.02 6.65 15 25 H 0.38 11.56 9.06 -74.06 -0.67 10.89 15 Total: -1.00 -54.99 249.77 4.12 -50.87 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 0.58 Total: 16.00 kcal Atomic # 6 Polarization: -23.78 SS G_CDS: 2.57 Total: -21.21 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.24 Total: -37.37 kcal Atomic # 8 Polarization: -33.41 SS G_CDS: -1.99 Total: -35.40 kcal Atomic # 9 Polarization: -6.99 SS G_CDS: 0.77 Total: -6.22 kcal Atomic # 14 Polarization: 33.66 SS G_CDS: 2.03 Total: 35.69 kcal Atomic # 17 Polarization: -2.29 SS G_CDS: -0.08 Total: -2.37 kcal Total: -54.99 4.12 -50.87 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215810923.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.347 kcal (2) G-P(sol) polarization free energy of solvation -54.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds