Wall clock time and date at job start Mon Mar 30 2020 05:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35737 * 117.00181 * 2 1 4 4 C 1.38301 * 120.22676 * 270.27887 * 3 2 1 5 5 F 1.35099 * 120.01001 * 0.02562 * 4 3 2 6 6 C 1.39078 * 119.98548 * 180.27468 * 4 3 2 7 7 O 1.35752 * 119.79155 * 179.69788 * 6 4 3 8 8 C 1.39557 * 120.42512 * 359.72204 * 6 4 3 9 9 Cl 1.73599 * 119.77557 * 179.97438 * 8 6 4 10 10 C 1.36392 * 120.45301 * 359.97438 * 8 6 4 11 11 C 1.40841 * 120.00209 * 359.97438 * 10 8 6 12 12 C 1.41023 * 120.20979 * 180.02562 * 11 10 8 13 13 H 1.08000 * 120.00122 * 205.48965 * 12 11 10 14 14 C 1.39858 * 119.99943 * 25.48595 * 12 11 10 15 15 N 1.30931 * 120.00006 * 26.47279 * 14 12 11 16 16 Si 1.86799 * 119.99948 * 206.46629 * 14 12 11 17 17 H 1.48503 * 109.46978 * 180.02562 * 16 14 12 18 18 H 1.48504 * 109.47351 * 300.00178 * 16 14 12 19 19 H 1.48501 * 109.47113 * 60.00398 * 16 14 12 20 20 H 1.09002 * 109.46960 * 299.99972 * 1 2 3 21 21 H 1.09001 * 109.47080 * 59.99397 * 1 2 3 22 22 H 1.08997 * 109.47164 * 179.97438 * 1 2 3 23 23 H 0.96705 * 113.99917 * 270.02710 * 7 6 4 24 24 H 1.07997 * 119.99937 * 180.02562 * 10 8 6 25 25 H 0.97000 * 120.00175 * 5.87882 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 2.3562 1.8324 -1.1950 5 9 2.0462 1.2377 -2.3677 6 6 2.9928 3.0689 -1.1891 7 8 3.3017 3.6740 -2.3644 8 6 3.3166 3.6914 0.0172 9 17 4.1117 5.2346 0.0048 10 6 3.0126 3.0958 1.2059 11 6 2.3670 1.8441 1.2216 12 6 2.0502 1.2245 2.4482 13 1 1.9492 0.1505 2.5005 14 6 1.8667 2.0009 3.5970 15 7 1.4749 3.2456 3.4902 16 14 2.1805 1.2618 5.2836 17 1 1.9153 2.2830 6.3286 18 1 1.2809 0.0983 5.4895 19 1 3.5943 0.8164 5.3736 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 4.1765 3.4447 -2.7069 24 1 3.2661 3.5843 2.1351 25 1 1.2299 3.6043 2.6229 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215811063.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:17 Heat of formation + Delta-G solvation = -127.679379 kcal Electronic energy + Delta-G solvation = -15861.338336 eV Core-core repulsion = 12780.269780 eV Total energy + Delta-G solvation = -3081.068557 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.025 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.03727 -38.83045 -37.30055 -35.85754 -35.52986 -33.51138 -29.15415 -28.88349 -26.31988 -24.94977 -21.64911 -21.42915 -18.54408 -17.84326 -16.58286 -16.19055 -15.78380 -15.00872 -14.45731 -14.32862 -14.08373 -13.71862 -13.49142 -13.31699 -12.53308 -12.05307 -11.83820 -11.57575 -11.32526 -11.07134 -10.62205 -10.54742 -10.22790 -9.96842 -9.82018 -9.36575 -8.98373 -7.86573 -7.81661 -7.52461 -4.87022 1.99742 2.12080 2.86310 2.98141 3.02826 3.20103 3.74422 3.93403 4.55311 4.82355 5.14733 5.37645 5.92216 5.99728 6.16973 6.18533 6.27367 6.65278 6.73016 6.93939 7.09319 7.25246 7.53836 7.58967 7.97976 8.31597 8.36584 8.62665 9.58872 Molecular weight = 246.02amu Principal moments of inertia in cm(-1) A = 0.020245 B = 0.010974 C = 0.007460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.756753 B = 2550.885607 C = 3752.672695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.314 6.314 3 C -0.063 4.063 4 C 0.121 3.879 5 F -0.144 7.144 6 C -0.080 4.080 7 O -0.478 6.478 8 C 0.021 3.979 9 Cl -0.091 7.091 10 C -0.203 4.203 11 C 0.098 3.902 12 C -0.466 4.466 13 H 0.095 0.905 14 C 0.033 3.967 15 N -0.764 5.764 16 Si 1.069 2.931 17 H -0.270 1.270 18 H -0.271 1.271 19 H -0.269 1.269 20 H 0.045 0.955 21 H 0.030 0.970 22 H 0.078 0.922 23 H 0.358 0.642 24 H 0.129 0.871 25 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.136 -1.316 -0.842 1.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.231 6.231 3 C -0.109 4.109 4 C 0.100 3.900 5 F -0.123 7.123 6 C -0.127 4.127 7 O -0.284 6.284 8 C -0.006 4.006 9 Cl -0.063 7.063 10 C -0.223 4.223 11 C 0.093 3.907 12 C -0.491 4.491 13 H 0.113 0.887 14 C -0.192 4.192 15 N -0.384 5.384 16 Si 0.890 3.110 17 H -0.194 1.194 18 H -0.196 1.196 19 H -0.194 1.194 20 H 0.063 0.937 21 H 0.049 0.951 22 H 0.096 0.904 23 H 0.209 0.791 24 H 0.147 0.853 25 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.696 -0.692 0.786 1.258 hybrid contribution 0.246 -0.249 -2.081 2.110 sum 0.942 -0.941 -1.295 1.857 Atomic orbital electron populations 1.22858 0.82222 1.01313 0.99896 1.86031 1.18154 1.24836 1.94029 1.18226 1.10021 0.92417 0.90237 1.18012 1.01072 0.90535 0.80373 1.91362 1.91128 1.83356 1.46448 1.17145 1.16280 0.94599 0.84687 1.84931 1.37950 1.69546 1.35942 1.20528 0.99069 0.87006 0.94006 1.98287 1.79168 1.29816 1.98984 1.20722 1.06824 0.98920 0.95832 1.17557 0.90619 0.90257 0.92242 1.20682 1.38057 0.97901 0.92509 0.88676 1.27390 0.91741 0.93809 1.06251 1.70527 1.21766 1.14117 1.32028 0.83563 0.78460 0.76398 0.72540 1.19408 1.19583 1.19385 0.93658 0.95117 0.90373 0.79056 0.85288 0.88271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.13 101.05 1.12 1.74 15 2 O -0.31 -7.28 9.57 -18.92 -0.18 -7.46 15 3 C -0.06 -1.53 5.76 -38.36 -0.22 -1.75 15 4 C 0.12 2.85 7.31 -39.25 -0.29 2.57 15 5 F -0.14 -3.32 16.94 2.25 0.04 -3.28 15 6 C -0.08 -1.81 6.72 -38.78 -0.26 -2.08 15 7 O -0.48 -9.76 12.78 -18.97 -0.24 -10.00 15 8 C 0.02 0.48 6.29 -39.76 -0.25 0.23 15 9 Cl -0.09 -1.79 28.46 -51.86 -1.48 -3.26 15 10 C -0.20 -4.80 7.67 -39.26 -0.30 -5.10 15 11 C 0.10 2.40 5.30 -106.66 -0.57 1.84 15 12 C -0.47 -11.14 8.63 -37.92 -0.33 -11.47 15 13 H 0.10 2.26 7.72 -52.49 -0.40 1.86 15 14 C 0.03 0.75 4.90 -17.33 -0.08 0.67 15 15 N -0.76 -18.17 12.32 55.54 0.68 -17.48 15 16 Si 1.07 19.19 30.01 -169.99 -5.10 14.09 15 17 H -0.27 -4.83 7.11 56.52 0.40 -4.43 15 18 H -0.27 -4.61 7.11 56.52 0.40 -4.21 15 19 H -0.27 -4.69 7.11 56.52 0.40 -4.29 15 20 H 0.04 0.88 8.14 -51.93 -0.42 0.46 15 21 H 0.03 0.57 8.14 -51.93 -0.42 0.14 15 22 H 0.08 1.23 8.14 -51.93 -0.42 0.81 15 23 H 0.36 5.75 9.06 45.56 0.41 6.16 15 24 H 0.13 3.09 6.52 -52.49 -0.34 2.74 15 25 H 0.30 7.46 6.79 -40.82 -0.28 7.18 15 LS Contribution 249.62 15.07 3.76 3.76 Total: -1.00 -26.20 249.62 -4.36 -30.56 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -0.67 Total: 6.42 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: -1.17 Total: -13.35 kcal Atomic # 7 Polarization: -18.17 SS G_CDS: 0.68 Total: -17.48 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.42 Total: -17.46 kcal Atomic # 9 Polarization: -3.32 SS G_CDS: 0.04 Total: -3.28 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.10 Total: 14.09 kcal Atomic # 17 Polarization: -1.79 SS G_CDS: -1.48 Total: -3.26 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -26.20 -4.36 -30.56 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215811063.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.118 kcal (2) G-P(sol) polarization free energy of solvation -26.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds