Wall clock time and date at job start Mon Mar 30 2020 05:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35756 * 117.00332 * 2 1 4 4 C 1.39123 * 119.78260 * 270.01898 * 3 2 1 5 5 F 1.35105 * 120.00835 * 359.97438 * 4 3 2 6 6 C 1.38266 * 119.98488 * 179.72090 * 4 3 2 7 7 O 1.35737 * 120.22927 * 180.25661 * 6 4 3 8 8 C 1.41415 * 119.54878 * 0.50758 * 6 4 3 9 9 C 1.41023 * 120.20885 * 179.74516 * 8 6 4 10 10 H 1.08000 * 120.00095 * 25.13202 * 9 8 6 11 11 C 1.39862 * 120.00031 * 205.12718 * 9 8 6 12 12 N 1.30935 * 119.99505 * 26.53415 * 11 9 8 13 13 Si 1.86796 * 119.99889 * 206.52724 * 11 9 8 14 14 H 1.48500 * 109.46965 * 180.02562 * 13 11 9 15 15 H 1.48497 * 109.47485 * 300.00154 * 13 11 9 16 16 H 1.48502 * 109.47159 * 60.00764 * 13 11 9 17 17 C 1.40800 * 119.58025 * 359.47351 * 8 6 4 18 18 C 1.36424 * 120.00733 * 0.29226 * 17 8 6 19 19 Cl 1.73599 * 119.77883 * 179.97438 * 18 17 8 20 20 H 1.09000 * 109.46877 * 60.00250 * 1 2 3 21 21 H 1.09001 * 109.47337 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46955 * 300.00794 * 1 2 3 23 23 H 0.96691 * 113.99937 * 270.25709 * 7 6 4 24 24 H 0.96991 * 120.00387 * 5.88038 * 12 11 9 25 25 H 1.08003 * 120.00015 * 180.27988 * 17 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 2.3588 1.8254 -1.2075 5 9 2.0502 1.2197 -2.3750 6 6 2.9814 3.0600 -1.2124 7 8 3.2847 3.6677 -2.3876 8 6 3.3048 3.6828 0.0154 9 6 3.9447 4.9395 0.0266 10 1 3.8354 5.6087 -0.8140 11 6 4.7208 5.3192 1.1264 12 7 5.2862 4.4059 1.8752 13 14 4.9510 7.1292 1.5267 14 1 5.8100 7.2645 2.7305 15 1 5.5984 7.8119 0.3779 16 1 3.6279 7.7500 1.7900 17 6 2.9787 3.0430 1.2265 18 6 2.3600 1.8272 1.2108 19 17 1.9613 1.0433 2.7075 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5140 0.8899 23 1 4.1597 3.4430 -2.7321 24 1 5.2384 3.4715 1.6197 25 1 3.2185 3.5146 2.1680 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215811134.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:15 Heat of formation + Delta-G solvation = -127.996255 kcal Electronic energy + Delta-G solvation = -15794.720703 eV Core-core repulsion = 12713.638406 eV Total energy + Delta-G solvation = -3081.082297 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.025 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.03446 -38.83422 -37.38689 -35.93722 -35.28668 -33.61210 -29.30727 -28.58255 -26.76150 -24.76280 -21.67547 -21.46611 -18.56605 -17.71603 -16.63673 -16.23367 -15.80862 -15.09685 -14.43789 -14.35182 -13.93852 -13.75256 -13.59224 -13.40115 -12.36501 -12.22935 -11.96695 -11.46828 -11.32913 -11.21821 -10.60453 -10.52673 -10.17517 -10.14518 -9.60079 -9.36812 -9.13018 -7.86958 -7.82358 -7.51925 -4.88331 2.01144 2.10573 2.87274 2.97950 3.02298 3.20044 3.74165 3.91852 4.50250 4.78132 5.20304 5.41300 5.76377 5.82641 5.98055 6.16107 6.25869 6.62311 6.72989 6.95247 7.10034 7.25280 7.53055 7.59276 7.99093 8.27240 8.32869 8.68653 9.58494 Molecular weight = 246.02amu Principal moments of inertia in cm(-1) A = 0.025244 B = 0.009466 C = 0.007209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.925108 B = 2957.355529 C = 3883.109834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.313 6.313 3 C -0.088 4.088 4 C 0.119 3.881 5 F -0.144 7.144 6 C -0.053 4.053 7 O -0.478 6.478 8 C 0.094 3.906 9 C -0.468 4.468 10 H 0.095 0.905 11 C 0.033 3.967 12 N -0.763 5.763 13 Si 1.070 2.930 14 H -0.270 1.270 15 H -0.271 1.271 16 H -0.269 1.269 17 C -0.205 4.205 18 C 0.027 3.973 19 Cl -0.091 7.091 20 H 0.035 0.965 21 H 0.080 0.920 22 H 0.039 0.961 23 H 0.361 0.639 24 H 0.304 0.696 25 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.488 -0.860 -0.166 2.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.229 6.229 3 C -0.134 4.134 4 C 0.099 3.901 5 F -0.123 7.123 6 C -0.100 4.100 7 O -0.285 6.285 8 C 0.089 3.911 9 C -0.493 4.493 10 H 0.113 0.887 11 C -0.192 4.192 12 N -0.384 5.384 13 Si 0.891 3.109 14 H -0.194 1.194 15 H -0.196 1.196 16 H -0.194 1.194 17 C -0.225 4.225 18 C -0.001 4.001 19 Cl -0.063 7.063 20 H 0.053 0.947 21 H 0.099 0.901 22 H 0.057 0.943 23 H 0.213 0.787 24 H 0.118 0.882 25 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.302 0.102 1.122 2.563 hybrid contribution -0.552 -1.418 -1.268 1.981 sum -2.854 -1.316 -0.146 3.146 Atomic orbital electron populations 1.22961 0.82405 1.01553 0.99823 1.86124 1.18050 1.24681 1.94034 1.17365 1.14208 0.92620 0.89224 1.18007 1.01379 0.90729 0.80007 1.91363 1.91192 1.83292 1.46460 1.18044 1.13283 0.92125 0.86566 1.84826 1.37830 1.70123 1.35746 1.17609 0.91596 0.92783 0.89088 1.20694 1.23720 0.99761 1.05130 0.88655 1.27395 0.91925 1.08286 0.91588 1.70523 1.27077 1.05810 1.34965 0.83551 0.78281 0.71222 0.77829 1.19401 1.19576 1.19448 1.20699 1.07667 0.95160 0.98975 1.20479 1.01404 0.93667 0.84519 1.98284 1.92978 1.81394 1.33612 0.94651 0.90125 0.94264 0.78673 0.88207 0.85306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.13 101.05 1.12 1.61 15 2 O -0.31 -6.73 9.69 -18.98 -0.18 -6.91 15 3 C -0.09 -2.03 5.74 -38.78 -0.22 -2.25 15 4 C 0.12 2.82 7.31 -39.24 -0.29 2.54 15 5 F -0.14 -3.31 16.94 2.25 0.04 -3.28 15 6 C -0.05 -1.27 6.74 -38.36 -0.26 -1.53 15 7 O -0.48 -10.57 12.65 -18.92 -0.24 -10.81 15 8 C 0.09 2.30 5.30 -106.66 -0.57 1.73 15 9 C -0.47 -11.14 8.63 -37.92 -0.33 -11.47 15 10 H 0.10 2.25 7.72 -52.49 -0.41 1.84 15 11 C 0.03 0.75 4.90 -17.33 -0.08 0.67 15 12 N -0.76 -18.09 12.32 55.54 0.68 -17.40 15 13 Si 1.07 19.15 30.01 -169.99 -5.10 14.05 15 14 H -0.27 -4.82 7.11 56.52 0.40 -4.42 15 15 H -0.27 -4.59 7.11 56.52 0.40 -4.19 15 16 H -0.27 -4.71 7.11 56.52 0.40 -4.31 15 17 C -0.20 -4.86 7.67 -39.27 -0.30 -5.16 15 18 C 0.03 0.61 6.29 -39.76 -0.25 0.36 15 19 Cl -0.09 -1.82 28.46 -51.86 -1.48 -3.29 15 20 H 0.03 0.61 8.14 -51.93 -0.42 0.18 15 21 H 0.08 1.15 8.14 -51.93 -0.42 0.72 15 22 H 0.04 0.66 8.14 -51.93 -0.42 0.24 15 23 H 0.36 6.45 9.06 45.56 0.41 6.86 15 24 H 0.30 7.42 6.79 -40.82 -0.28 7.14 15 25 H 0.13 3.09 6.52 -52.48 -0.34 2.75 15 LS Contribution 249.61 15.07 3.76 3.76 Total: -1.00 -26.21 249.61 -4.36 -30.58 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -0.67 Total: 6.82 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -1.17 Total: -13.52 kcal Atomic # 7 Polarization: -18.09 SS G_CDS: 0.68 Total: -17.40 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.42 Total: -17.72 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.04 Total: -3.28 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.10 Total: 14.05 kcal Atomic # 17 Polarization: -1.82 SS G_CDS: -1.48 Total: -3.29 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -26.21 -4.36 -30.58 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215811134.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.420 kcal (2) G-P(sol) polarization free energy of solvation -26.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds