Wall clock time and date at job start Mon Mar 30 2020 05:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35749 * 117.00033 * 2 1 4 4 C 1.38394 * 120.14406 * 270.22971 * 3 2 1 5 5 Cl 1.73597 * 119.86754 * 0.02562 * 4 3 2 6 6 C 1.38447 * 120.26023 * 180.28107 * 4 3 2 7 7 C 1.39123 * 120.55921 * 359.74062 * 6 4 3 8 8 O 1.36030 * 119.85745 * 179.97438 * 7 6 4 9 9 C 1.38167 * 120.28394 * 0.02562 * 7 6 4 10 10 F 1.35109 * 120.13610 * 180.02562 * 9 7 6 11 11 C 1.40907 * 119.73134 * 0.02562 * 9 7 6 12 12 C 1.41093 * 120.27589 * 179.97438 * 11 9 7 13 13 H 1.08002 * 120.00054 * 135.59505 * 12 11 9 14 14 C 1.39904 * 119.99914 * 315.60437 * 12 11 9 15 15 N 1.30903 * 119.99906 * 152.70690 * 14 12 11 16 16 Si 1.86797 * 119.99732 * 332.42765 * 14 12 11 17 17 H 1.48503 * 109.46916 * 185.55792 * 16 14 12 18 18 H 1.48494 * 109.47443 * 305.55727 * 16 14 12 19 19 H 1.48501 * 109.46943 * 65.56165 * 16 14 12 20 20 H 1.09000 * 109.47193 * 300.00278 * 1 2 3 21 21 H 1.08996 * 109.47127 * 60.00360 * 1 2 3 22 22 H 1.08996 * 109.47244 * 180.02562 * 1 2 3 23 23 H 1.08004 * 119.72021 * 179.76612 * 6 4 3 24 24 H 0.96696 * 114.00036 * 270.02328 * 8 7 6 25 25 H 0.96996 * 120.00043 * 359.71701 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 2.3565 1.8309 -1.1968 5 17 1.9566 1.0609 -2.7003 6 6 2.9903 3.0618 -1.1996 7 6 3.3173 3.6918 -0.0031 8 8 3.9403 4.9009 -0.0225 9 6 3.0128 3.0942 1.2049 10 9 3.3313 3.7089 2.3651 11 6 2.3688 1.8410 1.2219 12 6 2.0531 1.2201 2.4489 13 1 1.0838 0.7651 2.5902 14 6 2.9955 1.1940 3.4826 15 7 2.5988 1.1316 4.7285 16 14 4.8199 1.2403 3.0844 17 1 5.6038 1.0671 4.3338 18 1 5.1481 0.1439 2.1382 19 1 5.1583 2.5468 2.4649 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 3.2325 3.5372 -2.1387 24 1 4.9057 4.8458 -0.0300 25 1 1.6514 1.1076 4.9352 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215811196.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:08 Heat of formation + Delta-G solvation = -132.284614 kcal Electronic energy + Delta-G solvation = -16071.581175 eV Core-core repulsion = 12990.312921 eV Total energy + Delta-G solvation = -3081.268255 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.025 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.55506 -40.67874 -39.04949 -37.51618 -36.76664 -35.41702 -32.03749 -29.97405 -27.94667 -26.67962 -23.33259 -22.87967 -20.61164 -19.09061 -18.91404 -18.09758 -17.23105 -16.73439 -16.38598 -16.06198 -15.56894 -15.36840 -15.17968 -14.75855 -14.41550 -13.71591 -13.61373 -13.50445 -12.81743 -12.52947 -12.24710 -11.96253 -11.83474 -11.73413 -11.34943 -10.98361 -10.78496 -9.78917 -9.29370 -9.25708 -6.70586 0.07194 0.26794 1.14851 1.36357 1.43902 1.62321 2.17111 2.22887 2.71969 3.09017 3.31253 3.67469 4.17773 4.41683 4.46586 4.53131 4.68242 4.80800 4.89553 5.22098 5.35814 5.44758 5.55004 5.99416 6.13209 6.59108 6.71026 6.85630 7.89962 Molecular weight = 246.02amu Principal moments of inertia in cm(-1) A = 0.022591 B = 0.012136 C = 0.009129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.141406 B = 2306.579175 C = 3066.308044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.327 6.327 3 C 0.014 3.986 4 C -0.013 4.013 5 Cl -0.058 7.058 6 C -0.196 4.196 7 C 0.118 3.882 8 O -0.495 6.495 9 C -0.040 4.040 10 F -0.147 7.147 11 C 0.047 3.953 12 C -0.542 4.542 13 H 0.064 0.936 14 C 0.030 3.970 15 N -0.822 5.822 16 Si 1.070 2.930 17 H -0.265 1.265 18 H -0.264 1.264 19 H -0.248 1.248 20 H 0.025 0.975 21 H 0.050 0.950 22 H 0.111 0.889 23 H 0.161 0.839 24 H 0.409 0.591 25 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.749 1.312 -10.117 10.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.244 6.244 3 C -0.031 4.031 4 C -0.041 4.041 5 Cl -0.029 7.029 6 C -0.216 4.216 7 C 0.072 3.928 8 O -0.308 6.308 9 C -0.061 4.061 10 F -0.126 7.126 11 C 0.043 3.957 12 C -0.570 4.570 13 H 0.082 0.918 14 C -0.188 4.188 15 N -0.444 5.444 16 Si 0.888 3.112 17 H -0.189 1.189 18 H -0.188 1.188 19 H -0.172 1.172 20 H 0.044 0.956 21 H 0.069 0.931 22 H 0.129 0.871 23 H 0.179 0.821 24 H 0.267 0.733 25 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.659 1.280 -9.408 9.860 hybrid contribution -1.776 -0.069 -0.027 1.778 sum 0.883 1.211 -9.435 9.554 Atomic orbital electron populations 1.23035 0.79463 1.03757 0.99725 1.85931 1.20096 1.24383 1.93969 1.18703 1.06370 0.88312 0.89764 1.21022 1.02942 0.94136 0.85956 1.98301 1.92572 1.81259 1.30771 1.20619 1.08501 0.94541 0.97928 1.17988 0.98744 0.86035 0.90006 1.84744 1.25670 1.24118 1.96265 1.18342 1.13341 0.93121 0.81262 1.91305 1.91302 1.82275 1.47671 1.17910 0.93384 0.90432 0.93952 1.20037 1.02585 1.36490 0.97881 0.91772 1.28059 1.10233 0.89223 0.91236 1.70643 1.20537 1.32715 1.20485 0.83757 0.69975 0.79679 0.77839 1.18926 1.18849 1.17164 0.95625 0.93108 0.87110 0.82104 0.73271 0.90773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.20 11.13 113.37 1.26 2.46 15 2 O -0.33 -14.14 9.31 -90.74 -0.85 -14.99 15 3 C 0.01 0.64 5.75 23.06 0.13 0.77 15 4 C -0.01 -0.50 6.32 22.36 0.14 -0.36 15 5 Cl -0.06 -1.84 28.48 -2.72 -0.08 -1.92 15 6 C -0.20 -6.96 9.75 22.53 0.22 -6.74 15 7 C 0.12 4.64 6.69 22.47 0.15 4.79 15 8 O -0.50 -16.43 13.35 -93.89 -1.25 -17.69 15 9 C -0.04 -1.86 5.64 22.91 0.13 -1.73 15 10 F -0.15 -7.28 13.43 44.97 0.60 -6.68 15 11 C 0.05 2.35 4.60 -21.17 -0.10 2.25 15 12 C -0.54 -29.30 8.69 23.37 0.20 -29.10 15 13 H 0.06 3.66 7.48 -2.91 -0.02 3.63 15 14 C 0.03 1.59 4.73 85.23 0.40 1.99 15 15 N -0.82 -45.06 13.66 21.82 0.30 -44.77 15 16 Si 1.07 47.85 26.49 68.60 1.82 49.67 15 17 H -0.26 -11.29 7.11 99.48 0.71 -10.58 15 18 H -0.26 -11.33 7.11 99.48 0.71 -10.62 15 19 H -0.25 -10.51 5.64 99.48 0.56 -9.95 15 20 H 0.02 0.96 7.56 -2.39 -0.02 0.94 15 21 H 0.05 1.59 8.14 -2.39 -0.02 1.57 15 22 H 0.11 3.15 8.14 -2.39 -0.02 3.13 15 23 H 0.16 4.63 8.06 -2.91 -0.02 4.61 15 24 H 0.41 9.19 9.06 -74.06 -0.67 8.52 15 25 H 0.28 15.23 8.72 -92.71 -0.81 14.42 15 Total: -1.00 -59.85 245.05 3.48 -56.37 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: 0.39 Total: 5.67 kcal Atomic # 6 Polarization: -28.21 SS G_CDS: 2.54 Total: -25.66 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: 0.30 Total: -44.77 kcal Atomic # 8 Polarization: -30.58 SS G_CDS: -2.10 Total: -32.67 kcal Atomic # 9 Polarization: -7.28 SS G_CDS: 0.60 Total: -6.68 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 1.82 Total: 49.67 kcal Atomic # 17 Polarization: -1.84 SS G_CDS: -0.08 Total: -1.92 kcal Total: -59.85 3.48 -56.37 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215811196.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.917 kcal (2) G-P(sol) polarization free energy of solvation -59.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds