Wall clock time and date at job start Mon Mar 30 2020 05:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.36035 * 117.00232 * 2 1 4 4 C 1.39126 * 119.85154 * 0.02562 * 3 2 1 5 5 C 1.38453 * 120.55444 * 180.02562 * 4 3 2 6 6 Cl 1.73603 * 119.86783 * 180.02562 * 5 4 3 7 7 C 1.38390 * 120.26552 * 0.02562 * 5 4 3 8 8 O 1.35750 * 120.14649 * 180.02562 * 7 5 4 9 9 C 1.41295 * 119.70985 * 0.02562 * 7 5 4 10 10 C 1.41090 * 120.27348 * 179.97438 * 9 7 5 11 11 H 1.08001 * 120.00036 * 325.04914 * 10 9 7 12 12 C 1.39911 * 119.99951 * 145.04524 * 10 9 7 13 13 N 1.30899 * 120.00334 * 336.06851 * 12 10 9 14 14 Si 1.86804 * 119.99733 * 155.78833 * 12 10 9 15 15 H 1.48500 * 109.47043 * 180.27432 * 14 12 10 16 16 H 1.48496 * 109.47229 * 300.27541 * 14 12 10 17 17 H 1.48501 * 109.47094 * 60.28074 * 14 12 10 18 18 C 1.38165 * 119.86076 * 180.32619 * 3 2 1 19 19 F 1.35097 * 120.13844 * 359.97438 * 18 3 2 20 20 H 1.09007 * 109.47309 * 59.99947 * 1 2 3 21 21 H 1.08999 * 109.46897 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47495 * 299.99886 * 1 2 3 23 23 H 1.07999 * 119.72040 * 0.02562 * 4 3 2 24 24 H 0.96703 * 113.99928 * 267.10222 * 8 7 5 25 25 H 0.96997 * 119.99100 * 354.14268 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0466 1.2121 0.0000 4 6 1.2858 2.3769 0.0005 5 6 1.8993 3.6181 0.0000 6 17 0.9327 5.0602 0.0014 7 6 3.2799 3.7139 -0.0016 8 8 3.8788 4.9321 -0.0016 9 6 4.0633 2.5380 -0.0032 10 6 5.4718 2.6218 -0.0054 11 1 5.9645 3.4193 -0.5417 12 6 6.2301 1.6717 0.6872 13 7 5.6998 1.0128 1.6863 14 14 7.9970 1.3378 0.1813 15 1 8.5749 0.2913 1.0622 16 1 8.0286 0.8712 -1.2281 17 1 8.7923 2.5855 0.3077 18 6 3.4265 1.2810 -0.0068 19 9 4.1622 0.1479 -0.0130 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 0.2078 2.3124 0.0014 24 1 4.0913 5.2659 -0.8839 25 1 4.8114 1.2420 2.0011 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215811271.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:44 Heat of formation + Delta-G solvation = -139.003910 kcal Electronic energy + Delta-G solvation = -15944.095798 eV Core-core repulsion = 12862.536173 eV Total energy + Delta-G solvation = -3081.559625 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.025 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.24913 -40.78149 -39.35734 -37.41540 -36.68040 -35.42367 -31.40151 -30.21189 -27.89148 -27.00864 -23.34180 -23.01132 -20.26782 -19.21302 -18.48273 -18.08675 -17.19081 -16.87172 -16.18483 -15.80728 -15.67413 -15.52757 -15.07623 -14.54366 -14.17288 -14.00874 -13.52522 -12.88341 -12.82140 -12.53758 -12.39356 -11.99919 -11.97476 -11.78416 -11.46862 -11.26412 -10.78364 -9.66824 -9.33536 -8.88664 -6.68154 0.31117 0.47929 1.18508 1.50000 1.59529 1.78844 2.29394 2.37615 2.43577 3.04168 3.44279 3.85555 4.20285 4.29160 4.37821 4.50115 4.65824 4.94740 5.06902 5.18257 5.29384 5.43653 5.72898 5.76947 6.27143 6.50007 6.63154 7.06939 7.91556 Molecular weight = 246.02amu Principal moments of inertia in cm(-1) A = 0.022892 B = 0.010431 C = 0.007436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.822228 B = 2683.565787 C = 3764.792998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.337 6.337 3 C 0.132 3.868 4 C -0.283 4.283 5 C 0.007 3.993 6 Cl -0.063 7.063 7 C -0.011 4.011 8 O -0.480 6.480 9 C 0.049 3.951 10 C -0.513 4.513 11 H 0.095 0.905 12 C -0.002 4.002 13 N -0.789 5.789 14 Si 1.119 2.881 15 H -0.273 1.273 16 H -0.263 1.263 17 H -0.249 1.249 18 C -0.071 4.071 19 F -0.152 7.152 20 H 0.066 0.934 21 H 0.122 0.878 22 H 0.062 0.938 23 H 0.155 0.845 24 H 0.381 0.619 25 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.058 2.032 -4.108 7.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.252 6.252 3 C 0.086 3.914 4 C -0.303 4.303 5 C -0.020 4.020 6 Cl -0.034 7.034 7 C -0.058 4.058 8 O -0.289 6.289 9 C 0.044 3.956 10 C -0.540 4.540 11 H 0.113 0.887 12 C -0.220 4.220 13 N -0.410 5.410 14 Si 0.935 3.065 15 H -0.198 1.198 16 H -0.187 1.187 17 H -0.173 1.173 18 C -0.092 4.092 19 F -0.131 7.131 20 H 0.085 0.915 21 H 0.141 0.859 22 H 0.081 0.919 23 H 0.172 0.828 24 H 0.235 0.765 25 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.836 0.912 -3.107 5.820 hybrid contribution -1.694 0.986 -0.633 2.060 sum -6.530 1.898 -3.740 7.761 Atomic orbital electron populations 1.23351 0.76280 1.05463 1.02313 1.86092 1.23865 1.26194 1.89032 1.18644 0.89859 0.85326 0.97574 1.20266 0.99980 0.88514 1.21546 1.20873 0.89930 0.87780 1.03441 1.98284 1.70710 1.37520 1.96892 1.18007 0.87805 0.84778 1.15174 1.84759 1.80507 1.30350 1.33293 1.17921 0.95064 0.89143 0.93447 1.20586 0.90803 1.13358 1.29215 0.88663 1.28578 1.11091 0.90418 0.91898 1.70539 1.17500 1.34183 1.18758 0.82989 0.67759 0.78454 0.77300 1.19796 1.18745 1.17303 1.17258 0.86146 0.82715 1.23070 1.91325 1.77419 1.49181 1.95168 0.91493 0.85937 0.91945 0.82757 0.76453 0.91220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 9.81 113.37 1.11 1.65 15 2 O -0.34 -13.89 10.35 -93.94 -0.97 -14.86 15 3 C 0.13 6.08 6.68 22.47 0.15 6.23 15 4 C -0.28 -11.38 8.81 22.53 0.20 -11.19 15 5 C 0.01 0.31 6.32 22.36 0.14 0.45 15 6 Cl -0.06 -2.15 28.48 -2.72 -0.08 -2.23 15 7 C -0.01 -0.50 6.73 23.06 0.16 -0.34 15 8 O -0.48 -20.37 12.35 -90.75 -1.12 -21.49 15 9 C 0.05 2.57 5.08 -21.17 -0.11 2.46 15 10 C -0.51 -26.97 8.47 23.38 0.20 -26.77 15 11 H 0.10 4.69 7.88 -2.91 -0.02 4.67 15 12 C 0.00 -0.09 4.37 85.24 0.37 0.29 15 13 N -0.79 -44.17 11.91 21.83 0.26 -43.91 15 14 Si 1.12 43.43 30.00 68.60 2.06 45.48 15 15 H -0.27 -10.59 7.11 99.48 0.71 -9.88 15 16 H -0.26 -9.69 7.11 99.48 0.71 -8.98 15 17 H -0.25 -8.59 7.11 99.48 0.71 -7.88 15 18 C -0.07 -3.74 6.12 22.91 0.14 -3.60 15 19 F -0.15 -8.64 14.07 44.97 0.63 -8.01 15 20 H 0.07 1.59 7.65 -2.38 -0.02 1.57 15 21 H 0.12 2.50 8.14 -2.39 -0.02 2.48 15 22 H 0.06 1.54 7.65 -2.39 -0.02 1.52 15 23 H 0.15 5.09 6.26 -2.91 -0.02 5.07 15 24 H 0.38 12.64 9.06 -74.06 -0.67 11.97 15 25 H 0.28 16.32 6.95 -92.71 -0.64 15.67 15 Total: -1.00 -63.47 244.45 3.85 -59.62 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: 0.71 Total: 16.22 kcal Atomic # 6 Polarization: -33.19 SS G_CDS: 2.36 Total: -30.83 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: 0.26 Total: -43.91 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -2.09 Total: -36.35 kcal Atomic # 9 Polarization: -8.64 SS G_CDS: 0.63 Total: -8.01 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.06 Total: 45.48 kcal Atomic # 17 Polarization: -2.15 SS G_CDS: -0.08 Total: -2.23 kcal Total: -63.47 3.85 -59.62 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215811271.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.380 kcal (2) G-P(sol) polarization free energy of solvation -63.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds