Wall clock time and date at job start Mon Mar 30 2020 05:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35708 * 117.00173 * 2 1 4 4 C 1.39056 * 119.75731 * 359.97438 * 3 2 1 5 5 C 1.38025 * 120.19288 * 179.72380 * 4 3 2 6 6 O 1.35696 * 120.14273 * 180.02562 * 5 4 3 7 7 C 1.41424 * 119.71239 * 359.97438 * 5 4 3 8 8 C 1.40975 * 120.23098 * 179.97438 * 7 5 4 9 9 H 1.07997 * 120.00276 * 36.52194 * 8 7 5 10 10 C 1.39854 * 119.99921 * 216.50645 * 8 7 5 11 11 N 1.30964 * 119.99745 * 20.02083 * 10 8 7 12 12 Si 1.86797 * 120.00062 * 200.01718 * 10 8 7 13 13 H 1.48503 * 109.46935 * 89.99986 * 12 10 8 14 14 H 1.48491 * 109.47202 * 210.00051 * 12 10 8 15 15 H 1.48498 * 109.47131 * 330.00584 * 12 10 8 16 16 C 1.41033 * 119.52964 * 0.02562 * 7 5 4 17 17 F 1.35104 * 120.10074 * 180.02562 * 16 7 5 18 18 C 1.37674 * 119.80031 * 359.97438 * 16 7 5 19 19 Cl 1.73598 * 119.85916 * 180.02562 * 18 16 7 20 20 H 1.08996 * 109.47018 * 300.00271 * 1 2 3 21 21 H 1.09005 * 109.47015 * 60.00195 * 1 2 3 22 22 H 1.09004 * 109.46941 * 180.02562 * 1 2 3 23 23 H 1.08001 * 119.90001 * 359.69559 * 4 3 2 24 24 H 0.96692 * 114.00062 * 89.99662 * 6 5 4 25 25 H 0.96997 * 119.99373 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2091 0.0000 4 6 1.2829 2.3722 -0.0005 5 6 1.9002 3.6067 0.0052 6 8 1.1554 4.7410 0.0052 7 6 3.3123 3.6843 0.0122 8 6 3.9541 4.9394 0.0176 9 1 3.5282 5.7615 0.5736 10 6 5.1428 5.1200 -0.6969 11 7 5.4578 4.2942 -1.6633 12 14 6.2810 6.5392 -0.2728 13 1 7.2575 6.1000 0.7562 14 1 7.0085 6.9718 -1.4929 15 1 5.4819 7.6738 0.2555 16 6 4.0737 2.4972 0.0127 17 9 5.4234 2.5579 0.0198 18 6 3.4375 1.2763 0.0069 19 17 4.3732 -0.1859 0.0081 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 0.2048 2.3092 -0.0059 24 1 0.9359 5.0673 0.8885 25 1 6.2820 4.4197 -2.1590 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215811334.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:20 Heat of formation + Delta-G solvation = -108.962014 kcal Electronic energy + Delta-G solvation = -15871.942149 eV Core-core repulsion = 12791.685238 eV Total energy + Delta-G solvation = -3080.256911 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.025 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -47.21664 -39.10056 -37.35445 -35.73676 -34.65907 -33.38446 -29.53032 -28.71327 -26.94849 -24.75868 -21.38008 -21.20819 -18.02989 -17.63293 -16.26126 -16.07436 -15.33995 -15.10718 -14.74480 -14.42327 -14.03400 -13.70117 -13.33143 -12.67362 -12.21928 -11.83408 -11.82046 -11.43251 -11.29171 -10.92561 -10.76906 -10.63184 -10.34102 -9.88869 -9.75725 -9.51802 -9.00211 -7.45799 -7.26574 -6.88176 -4.47635 2.14037 2.43673 3.03913 3.08288 3.09566 3.11366 3.89685 3.96801 4.30037 4.98201 5.26239 5.47519 5.56608 5.67397 5.84343 5.95604 6.30137 6.60492 6.85611 6.97566 7.08893 7.36138 7.70419 8.07102 8.15693 8.36908 8.64610 8.80310 10.09642 Molecular weight = 246.02amu Principal moments of inertia in cm(-1) A = 0.027784 B = 0.009817 C = 0.007520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.541328 B = 2851.613559 C = 3722.695143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.315 6.315 3 C 0.043 3.957 4 C -0.194 4.194 5 C 0.050 3.950 6 O -0.483 6.483 7 C 0.049 3.951 8 C -0.448 4.448 9 H 0.088 0.912 10 C 0.075 3.925 11 N -0.773 5.773 12 Si 0.914 3.086 13 H -0.266 1.266 14 H -0.277 1.277 15 H -0.262 1.262 16 C 0.087 3.913 17 F -0.120 7.120 18 C -0.069 4.069 19 Cl -0.085 7.085 20 H 0.046 0.954 21 H 0.047 0.953 22 H 0.088 0.912 23 H 0.119 0.881 24 H 0.364 0.636 25 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.780 -2.652 3.421 6.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.229 6.229 3 C -0.002 4.002 4 C -0.213 4.213 5 C 0.004 3.996 6 O -0.290 6.290 7 C 0.045 3.955 8 C -0.476 4.476 9 H 0.106 0.894 10 C -0.146 4.146 11 N -0.396 5.396 12 Si 0.738 3.262 13 H -0.191 1.191 14 H -0.202 1.202 15 H -0.185 1.185 16 C 0.065 3.935 17 F -0.099 7.099 18 C -0.097 4.097 19 Cl -0.056 7.056 20 H 0.064 0.936 21 H 0.066 0.934 22 H 0.106 0.894 23 H 0.137 0.863 24 H 0.217 0.783 25 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.338 -3.064 2.596 5.912 hybrid contribution 0.549 0.651 0.485 0.980 sum -3.789 -2.413 3.082 5.448 Atomic orbital electron populations 1.22826 0.80095 1.02423 1.00677 1.85947 1.19701 1.26693 1.90594 1.17489 0.88997 0.83959 1.09798 1.20888 0.98682 0.91536 1.10230 1.18023 0.88401 0.84197 1.09015 1.84776 1.71661 1.41193 1.31416 1.17702 0.90492 0.92627 0.94708 1.19109 1.05651 0.96250 1.26583 0.89356 1.25847 0.97687 0.97838 0.93241 1.69811 1.22417 1.34317 1.13083 0.86195 0.80096 0.80828 0.79048 1.19098 1.20216 1.18549 1.16902 0.77480 0.90584 1.08525 1.91396 1.28162 1.96863 1.93453 1.19880 0.88977 0.85981 1.14894 1.98269 1.73159 1.36747 1.97463 0.93553 0.93439 0.89388 0.86322 0.78337 0.90258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 9.80 101.05 0.99 1.49 15 2 O -0.31 -6.14 9.92 -18.83 -0.19 -6.33 15 3 C 0.04 0.94 6.70 -38.85 -0.26 0.68 15 4 C -0.19 -4.09 8.94 -39.36 -0.35 -4.44 15 5 C 0.05 1.15 6.73 -38.45 -0.26 0.90 15 6 O -0.48 -10.06 12.92 -18.79 -0.24 -10.30 15 7 C 0.05 1.26 5.41 -106.59 -0.58 0.69 15 8 C -0.45 -11.57 8.47 -37.94 -0.32 -11.89 15 9 H 0.09 2.15 7.87 -52.49 -0.41 1.74 15 10 C 0.07 1.88 4.50 -17.32 -0.08 1.81 15 11 N -0.77 -20.47 11.11 55.54 0.62 -19.85 15 12 Si 0.91 18.84 29.60 -169.99 -5.03 13.81 15 13 H -0.27 -5.47 7.11 56.52 0.40 -5.07 15 14 H -0.28 -5.59 7.11 56.52 0.40 -5.18 15 15 H -0.26 -5.22 7.11 56.52 0.40 -4.82 15 16 C 0.09 2.26 6.64 -38.73 -0.26 2.00 15 17 F -0.12 -3.23 13.79 2.25 0.03 -3.20 15 18 C -0.07 -1.66 6.33 -39.36 -0.25 -1.91 15 19 Cl -0.08 -1.83 28.12 -51.86 -1.46 -3.29 15 20 H 0.05 0.60 7.65 -51.93 -0.40 0.20 15 21 H 0.05 0.65 7.64 -51.93 -0.40 0.25 15 22 H 0.09 0.98 8.14 -51.93 -0.42 0.56 15 23 H 0.12 2.14 6.25 -52.49 -0.33 1.81 15 24 H 0.36 5.67 9.06 45.56 0.41 6.08 15 25 H 0.29 6.96 8.30 -40.82 -0.34 6.62 15 LS Contribution 245.22 15.07 3.70 3.70 Total: -1.00 -29.34 245.22 -4.62 -33.96 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -0.68 Total: 2.19 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: -1.36 Total: -10.68 kcal Atomic # 7 Polarization: -20.47 SS G_CDS: 0.62 Total: -19.85 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.43 Total: -16.64 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.03 Total: -3.20 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Atomic # 17 Polarization: -1.83 SS G_CDS: -1.46 Total: -3.29 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -29.34 -4.62 -33.96 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215811334.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.003 kcal (2) G-P(sol) polarization free energy of solvation -29.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds