Wall clock time and date at job start Mon Mar 30 2020 05:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35708 * 117.00173 * 2 1 4 4 C 1.39056 * 119.75731 * 359.97438 * 3 2 1 5 5 C 1.38025 * 120.19288 * 179.72380 * 4 3 2 6 6 O 1.35696 * 120.14273 * 180.02562 * 5 4 3 7 7 C 1.41424 * 119.71239 * 359.97438 * 5 4 3 8 8 C 1.40975 * 120.23098 * 179.97438 * 7 5 4 9 9 H 1.07997 * 120.00276 * 36.52194 * 8 7 5 10 10 C 1.39854 * 119.99921 * 216.50645 * 8 7 5 11 11 N 1.30964 * 119.99745 * 20.02083 * 10 8 7 12 12 Si 1.86797 * 120.00062 * 200.01718 * 10 8 7 13 13 H 1.48503 * 109.46935 * 89.99986 * 12 10 8 14 14 H 1.48491 * 109.47202 * 210.00051 * 12 10 8 15 15 H 1.48498 * 109.47131 * 330.00584 * 12 10 8 16 16 C 1.41033 * 119.52964 * 0.02562 * 7 5 4 17 17 F 1.35104 * 120.10074 * 180.02562 * 16 7 5 18 18 C 1.37674 * 119.80031 * 359.97438 * 16 7 5 19 19 Cl 1.73598 * 119.85916 * 180.02562 * 18 16 7 20 20 H 1.08996 * 109.47018 * 300.00271 * 1 2 3 21 21 H 1.09005 * 109.47015 * 60.00195 * 1 2 3 22 22 H 1.09004 * 109.46941 * 180.02562 * 1 2 3 23 23 H 1.08001 * 119.90001 * 359.69559 * 4 3 2 24 24 H 0.96692 * 114.00062 * 89.99662 * 6 5 4 25 25 H 0.96997 * 119.99373 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2091 0.0000 4 6 1.2829 2.3722 -0.0005 5 6 1.9002 3.6067 0.0052 6 8 1.1554 4.7410 0.0052 7 6 3.3123 3.6843 0.0122 8 6 3.9541 4.9394 0.0176 9 1 3.5282 5.7615 0.5736 10 6 5.1428 5.1200 -0.6969 11 7 5.4578 4.2942 -1.6633 12 14 6.2810 6.5392 -0.2728 13 1 7.2575 6.1000 0.7562 14 1 7.0085 6.9718 -1.4929 15 1 5.4819 7.6738 0.2555 16 6 4.0737 2.4972 0.0127 17 9 5.4234 2.5579 0.0198 18 6 3.4375 1.2763 0.0069 19 17 4.3732 -0.1859 0.0081 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 0.2048 2.3092 -0.0059 24 1 0.9359 5.0673 0.8885 25 1 6.2820 4.4197 -2.1590 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215811334.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:20 Heat of formation + Delta-G solvation = -129.141937 kcal Electronic energy + Delta-G solvation = -15872.817216 eV Core-core repulsion = 12791.685238 eV Total energy + Delta-G solvation = -3081.131978 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.025 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.16007 -40.75408 -38.99133 -37.46391 -36.39915 -35.16854 -31.31158 -30.42143 -28.34285 -26.48677 -23.14994 -22.95653 -19.73556 -19.42160 -17.97013 -17.73612 -17.10777 -16.59167 -16.52105 -16.13973 -15.81127 -15.35790 -15.01070 -14.35996 -13.72098 -13.61562 -13.46427 -13.22965 -12.93802 -12.53219 -12.27836 -12.12901 -12.00565 -11.62092 -11.48465 -11.21521 -10.77381 -9.25632 -9.06244 -8.68875 -6.36627 0.34085 0.65490 1.31573 1.38532 1.46470 1.52125 2.20460 2.48235 2.52473 3.17509 3.58034 3.97821 4.19240 4.45259 4.50797 4.62981 4.78289 4.87766 5.08423 5.23288 5.31568 5.56194 5.87544 6.24742 6.52324 6.65217 6.79592 7.19436 8.30509 Molecular weight = 246.02amu Principal moments of inertia in cm(-1) A = 0.027784 B = 0.009817 C = 0.007520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.541328 B = 2851.613559 C = 3722.695143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.327 6.327 3 C 0.061 3.939 4 C -0.191 4.191 5 C 0.059 3.941 6 O -0.490 6.490 7 C 0.015 3.985 8 C -0.481 4.481 9 H 0.092 0.908 10 C 0.033 3.967 11 N -0.818 5.818 12 Si 0.981 3.019 13 H -0.267 1.267 14 H -0.271 1.271 15 H -0.250 1.250 16 C 0.058 3.942 17 F -0.135 7.135 18 C -0.093 4.093 19 Cl -0.073 7.073 20 H 0.063 0.937 21 H 0.055 0.945 22 H 0.121 0.879 23 H 0.156 0.844 24 H 0.391 0.609 25 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.461 -2.748 3.933 8.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.241 6.241 3 C 0.015 3.985 4 C -0.211 4.211 5 C 0.013 3.987 6 O -0.300 6.300 7 C 0.011 3.989 8 C -0.510 4.510 9 H 0.110 0.890 10 C -0.183 4.183 11 N -0.443 5.443 12 Si 0.801 3.199 13 H -0.192 1.192 14 H -0.196 1.196 15 H -0.173 1.173 16 C 0.036 3.964 17 F -0.114 7.114 18 C -0.121 4.121 19 Cl -0.044 7.044 20 H 0.081 0.919 21 H 0.074 0.926 22 H 0.139 0.861 23 H 0.174 0.826 24 H 0.247 0.753 25 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.057 -3.165 3.130 7.517 hybrid contribution 0.812 0.511 0.357 1.024 sum -5.245 -2.654 3.487 6.835 Atomic orbital electron populations 1.23266 0.76922 1.05178 1.01830 1.85955 1.22892 1.25286 1.90010 1.17647 0.88580 0.85294 1.06976 1.21180 1.00487 0.90286 1.09128 1.18192 0.87850 0.85574 1.07085 1.84679 1.70952 1.40610 1.33759 1.18095 0.91987 0.92899 0.95935 1.19349 1.07065 0.96690 1.27901 0.88970 1.26691 0.98812 1.00246 0.92577 1.69877 1.23189 1.36664 1.14582 0.85204 0.77985 0.77922 0.78749 1.19228 1.19587 1.17322 1.17193 0.77145 0.91668 1.10399 1.91335 1.29247 1.97012 1.93805 1.20082 0.90204 0.86090 1.15692 1.98256 1.73087 1.35642 1.97446 0.91883 0.92596 0.86090 0.82610 0.75264 0.90111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 9.80 113.37 1.11 1.65 15 2 O -0.33 -11.81 9.92 -90.28 -0.90 -12.71 15 3 C 0.06 2.58 6.70 22.75 0.15 2.73 15 4 C -0.19 -7.59 8.94 22.42 0.20 -7.39 15 5 C 0.06 2.67 6.73 23.00 0.15 2.82 15 6 O -0.49 -19.37 12.92 -90.16 -1.16 -20.54 15 7 C 0.01 0.77 5.41 -21.14 -0.11 0.65 15 8 C -0.48 -25.24 8.47 23.33 0.20 -25.04 15 9 H 0.09 4.53 7.87 -2.91 -0.02 4.51 15 10 C 0.03 1.69 4.50 85.21 0.38 2.07 15 11 N -0.82 -44.62 11.11 21.82 0.24 -44.38 15 12 Si 0.98 39.11 29.60 68.60 2.03 41.14 15 13 H -0.27 -10.58 7.11 99.48 0.71 -9.87 15 14 H -0.27 -10.40 7.11 99.48 0.71 -9.69 15 15 H -0.25 -9.35 7.11 99.48 0.71 -8.64 15 16 C 0.06 3.05 6.64 22.82 0.15 3.20 15 17 F -0.14 -7.51 13.79 44.97 0.62 -6.89 15 18 C -0.09 -4.41 6.33 22.42 0.14 -4.27 15 19 Cl -0.07 -3.13 28.12 -2.72 -0.08 -3.20 15 20 H 0.06 1.34 7.65 -2.39 -0.02 1.32 15 21 H 0.06 1.28 7.64 -2.38 -0.02 1.26 15 22 H 0.12 2.14 8.14 -2.38 -0.02 2.12 15 23 H 0.16 4.92 6.25 -2.91 -0.02 4.90 15 24 H 0.39 11.18 9.06 -74.06 -0.67 10.51 15 25 H 0.29 14.49 8.30 -92.71 -0.77 13.72 15 Total: -1.00 -63.72 245.22 3.72 -60.00 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: 0.58 Total: 10.15 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: 2.38 Total: -23.56 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: 0.24 Total: -44.38 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -2.06 Total: -33.24 kcal Atomic # 9 Polarization: -7.51 SS G_CDS: 0.62 Total: -6.89 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.14 kcal Atomic # 17 Polarization: -3.13 SS G_CDS: -0.08 Total: -3.20 kcal Total: -63.72 3.72 -60.00 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215811334.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.140 kcal (2) G-P(sol) polarization free energy of solvation -63.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds