Wall clock time and date at job start Mon Mar 30 2020 05:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 F 1.39900 * 109.47052 * 2 1 4 4 F 1.39895 * 109.47426 * 239.99827 * 2 1 3 5 5 C 1.50701 * 109.47195 * 119.99724 * 2 1 3 6 6 C 1.37759 * 120.12977 * 104.52135 * 5 2 1 7 7 Cl 1.73592 * 119.89120 * 359.74967 * 6 5 2 8 8 C 1.38733 * 120.21787 * 179.73045 * 6 5 2 9 9 C 1.38636 * 120.49049 * 359.97438 * 8 6 5 10 10 C 1.37602 * 120.25973 * 359.97438 * 9 8 6 11 11 C 1.40671 * 120.13666 * 284.25190 * 5 2 1 12 12 C 1.41401 * 120.23532 * 0.26762 * 11 5 2 13 13 H 1.07993 * 120.00334 * 328.09185 * 12 11 5 14 14 C 1.39950 * 119.99623 * 148.09486 * 12 11 5 15 15 N 1.30820 * 120.00011 * 348.97042 * 14 12 11 16 16 Si 1.86805 * 119.99510 * 168.97105 * 14 12 11 17 17 H 1.48499 * 109.47080 * 84.99427 * 16 14 12 18 18 H 1.48503 * 109.46614 * 204.98756 * 16 14 12 19 19 H 1.48494 * 109.47191 * 324.98761 * 16 14 12 20 20 H 1.09001 * 109.47437 * 302.56730 * 1 2 3 21 21 H 1.09000 * 109.47406 * 62.56743 * 1 2 3 22 22 H 1.08998 * 109.47572 * 182.56707 * 1 2 3 23 23 H 1.07999 * 119.75414 * 179.97438 * 8 6 5 24 24 H 1.08001 * 119.86750 * 180.02562 * 9 8 6 25 25 H 1.08008 * 120.11252 * 179.97438 * 10 9 8 26 26 H 0.97009 * 119.99811 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6595 -1.1422 5 6 2.0323 -0.7104 1.2305 6 6 2.5445 -1.9854 1.1322 7 17 2.6048 -2.7768 -0.4116 8 6 3.0126 -2.6389 2.2629 9 6 2.9712 -2.0182 3.5019 10 6 2.4647 -0.7445 3.6228 11 6 1.9854 -0.0720 2.4832 12 6 1.4618 1.2367 2.5962 13 1 1.5720 1.9348 1.7797 14 6 0.8009 1.6272 3.7664 15 7 0.4762 0.7324 4.6639 16 14 0.3825 3.4260 4.0467 17 1 -0.9068 3.7438 3.3819 18 1 0.2651 3.6855 5.5042 19 1 1.4566 4.2786 3.4771 20 1 -0.3634 0.5532 0.8661 21 1 -0.3634 0.4734 -0.9121 22 1 -0.3634 -1.0266 0.0460 23 1 3.4122 -3.6386 2.1773 24 1 3.3387 -2.5361 4.3754 25 1 2.4332 -0.2633 4.5892 26 1 0.0178 1.0031 5.4748 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215811741.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:25 Heat of formation + Delta-G solvation = -82.868696 kcal Electronic energy + Delta-G solvation = -16138.745714 eV Core-core repulsion = 13071.993084 eV Total energy + Delta-G solvation = -3066.752630 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -47.98060 -45.99140 -37.90293 -35.52126 -33.73769 -31.89571 -29.59798 -28.53853 -25.66617 -22.74605 -21.26482 -20.13274 -17.74048 -16.43132 -16.12010 -15.46227 -15.23505 -14.62734 -13.98632 -13.51876 -12.97443 -12.81559 -12.71826 -12.51637 -11.98381 -11.77082 -11.63955 -11.46867 -11.31951 -11.22039 -10.70501 -10.54500 -10.30861 -10.02123 -9.76837 -9.37284 -9.12620 -7.74816 -7.49255 -6.96015 -4.65382 2.41664 2.55082 2.99043 3.01973 3.05829 3.15024 3.81618 4.38851 4.79817 5.19464 5.27591 5.51619 5.71895 6.07417 6.17862 6.35149 6.47417 6.67747 6.78064 6.85252 7.02671 7.06701 7.39387 7.62811 7.76343 7.89312 8.35642 8.58249 8.63314 9.99522 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.028241 B = 0.010506 C = 0.008215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.218518 B = 2664.614225 C = 3407.743419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.355 3.645 3 F -0.201 7.201 4 F -0.204 7.204 5 C -0.265 4.265 6 C 0.031 3.969 7 Cl -0.102 7.102 8 C -0.231 4.231 9 C -0.088 4.088 10 C -0.148 4.148 11 C 0.147 3.853 12 C -0.464 4.464 13 H 0.104 0.896 14 C 0.076 3.924 15 N -0.792 5.792 16 Si 0.912 3.088 17 H -0.266 1.266 18 H -0.276 1.276 19 H -0.258 1.258 20 H 0.098 0.902 21 H 0.062 0.938 22 H 0.076 0.924 23 H 0.104 0.896 24 H 0.102 0.898 25 H 0.124 0.876 26 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.420 -0.819 -2.567 2.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.319 3.681 3 F -0.182 7.182 4 F -0.185 7.185 5 C -0.268 4.268 6 C 0.005 3.995 7 Cl -0.073 7.073 8 C -0.251 4.251 9 C -0.107 4.107 10 C -0.167 4.167 11 C 0.144 3.856 12 C -0.492 4.492 13 H 0.122 0.878 14 C -0.143 4.143 15 N -0.416 5.416 16 Si 0.736 3.264 17 H -0.191 1.191 18 H -0.201 1.201 19 H -0.182 1.182 20 H 0.117 0.883 21 H 0.081 0.919 22 H 0.095 0.905 23 H 0.122 0.878 24 H 0.120 0.880 25 H 0.142 0.858 26 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.523 -0.890 -2.504 2.709 hybrid contribution -0.163 0.623 0.088 0.650 sum -0.686 -0.268 -2.416 2.526 Atomic orbital electron populations 1.22615 0.92431 1.04454 1.04173 1.19100 0.92791 0.74619 0.81569 1.92881 1.90720 1.38054 1.96505 1.93046 1.90705 1.80655 1.54133 1.19850 1.16667 0.94958 0.95321 1.20345 1.01274 0.92815 0.85081 1.98288 1.97299 1.80775 1.30975 1.20263 1.12560 1.00681 0.91630 1.20723 0.99187 0.95523 0.95295 1.21395 1.01038 0.94780 0.99529 1.17187 0.87285 0.92574 0.88592 1.20159 1.30249 0.97481 1.01356 0.87849 1.25996 0.93814 0.99832 0.94684 1.69783 1.28484 1.35401 1.07951 0.86236 0.80038 0.81924 0.78201 1.19118 1.20067 1.18195 0.88340 0.91887 0.90520 0.87797 0.87997 0.85796 0.90504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.43 9.27 37.15 0.34 -3.09 15 2 C 0.36 7.83 2.01 -27.88 -0.06 7.77 15 3 F -0.20 -4.61 14.19 2.25 0.03 -4.57 15 4 F -0.20 -4.42 13.15 2.25 0.03 -4.39 15 5 C -0.26 -6.30 5.04 -103.88 -0.52 -6.83 15 6 C 0.03 0.71 6.28 -39.57 -0.25 0.46 15 7 Cl -0.10 -2.05 25.33 -51.86 -1.31 -3.37 15 8 C -0.23 -4.99 9.83 -39.25 -0.39 -5.38 15 9 C -0.09 -1.92 10.02 -39.67 -0.40 -2.32 15 10 C -0.15 -3.57 8.64 -38.87 -0.34 -3.90 15 11 C 0.15 3.67 5.46 -106.83 -0.58 3.08 15 12 C -0.46 -11.40 7.09 -37.74 -0.27 -11.67 15 13 H 0.10 2.54 5.39 -52.49 -0.28 2.25 15 14 C 0.08 1.76 5.23 -17.34 -0.09 1.67 15 15 N -0.79 -18.83 11.08 55.55 0.62 -18.22 15 16 Si 0.91 17.67 29.57 -169.99 -5.03 12.64 15 17 H -0.27 -5.09 7.11 56.52 0.40 -4.69 15 18 H -0.28 -5.21 7.11 56.52 0.40 -4.81 15 19 H -0.26 -5.05 7.11 56.52 0.40 -4.65 15 20 H 0.10 1.98 7.00 -51.93 -0.36 1.62 15 21 H 0.06 1.04 8.14 -51.93 -0.42 0.62 15 22 H 0.08 1.41 8.14 -51.93 -0.42 0.98 15 23 H 0.10 2.01 8.06 -52.49 -0.42 1.58 15 24 H 0.10 1.91 8.06 -52.49 -0.42 1.49 15 25 H 0.12 3.03 6.49 -52.48 -0.34 2.69 15 26 H 0.28 6.17 8.30 -40.82 -0.34 5.83 15 LS Contribution 243.10 15.07 3.66 3.66 Total: -1.00 -25.19 243.10 -6.36 -31.54 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -1.81 Total: 2.92 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: -2.55 Total: -20.22 kcal Atomic # 7 Polarization: -18.83 SS G_CDS: 0.62 Total: -18.22 kcal Atomic # 9 Polarization: -9.03 SS G_CDS: 0.06 Total: -8.97 kcal Atomic # 14 Polarization: 17.67 SS G_CDS: -5.03 Total: 12.64 kcal Atomic # 17 Polarization: -2.05 SS G_CDS: -1.31 Total: -3.37 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -25.19 -6.36 -31.54 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215811741.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.326 kcal (2) G-P(sol) polarization free energy of solvation -25.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds