Wall clock time and date at job start Mon Mar 30 2020 05:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 F 1.39902 * 109.46752 * 2 1 4 4 F 1.39898 * 109.47329 * 239.99459 * 2 1 3 5 5 C 1.50694 * 109.46670 * 119.99500 * 2 1 3 6 6 C 1.38683 * 119.74028 * 270.01974 * 5 2 1 7 7 C 1.36581 * 120.41930 * 179.71902 * 6 5 2 8 8 C 1.40718 * 119.88008 * 0.52047 * 7 6 5 9 9 C 1.41335 * 120.25614 * 179.76562 * 8 7 6 10 10 H 1.08005 * 119.99620 * 208.78686 * 9 8 7 11 11 C 1.39935 * 120.00163 * 28.78594 * 9 8 7 12 12 N 1.30828 * 120.00395 * 197.61587 * 11 9 8 13 13 Si 1.86803 * 120.00104 * 17.61554 * 11 9 8 14 14 H 1.48506 * 109.47131 * 270.00169 * 13 11 9 15 15 H 1.48510 * 109.47012 * 29.99809 * 13 11 9 16 16 H 1.48496 * 109.47683 * 149.99679 * 13 11 9 17 17 C 1.40859 * 119.48729 * 359.48393 * 8 7 6 18 18 Cl 1.73605 * 120.20620 * 180.27434 * 17 8 7 19 19 C 1.37858 * 119.58786 * 0.25699 * 17 8 7 20 20 H 1.08996 * 109.47372 * 300.00527 * 1 2 3 21 21 H 1.09005 * 109.46896 * 60.00795 * 1 2 3 22 22 H 1.09001 * 109.46837 * 180.02562 * 1 2 3 23 23 H 1.08002 * 119.79236 * 359.97438 * 6 5 2 24 24 H 1.08000 * 120.06158 * 180.26479 * 7 6 5 25 25 H 0.97006 * 120.00072 * 355.43679 * 12 11 9 26 26 H 1.07998 * 119.95224 * 179.97438 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9964 -0.6596 -1.1422 5 6 2.0323 -0.7103 1.2305 6 6 2.2611 0.0083 2.3944 7 6 2.7108 -0.6224 3.5193 8 6 2.9545 -2.0081 3.4962 9 6 3.4246 -2.6680 4.6543 10 1 4.0342 -3.5546 4.5607 11 6 3.1002 -2.1725 5.9222 12 7 3.7902 -2.5492 6.9679 13 14 1.6820 -0.9732 6.1216 14 1 2.1855 0.4167 5.9805 15 1 0.6595 -1.2377 5.0775 16 1 1.0734 -1.1452 7.4652 17 6 2.7205 -2.7336 2.3117 18 17 3.0080 -4.4450 2.2644 19 6 2.2614 -2.0762 1.1903 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5137 -0.8901 22 1 -0.3633 -1.0277 0.0005 23 1 2.0787 1.0726 2.4126 24 1 2.8831 -0.0579 4.4238 25 1 4.4832 -3.2217 6.8753 26 1 2.0804 -2.6265 0.2789 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215811811.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:27 Heat of formation + Delta-G solvation = -120.702981 kcal Electronic energy + Delta-G solvation = -15573.273198 eV Core-core repulsion = 12504.879950 eV Total energy + Delta-G solvation = -3068.393248 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.86377 -47.89141 -39.92552 -37.02319 -35.99669 -33.58196 -31.54141 -31.01339 -27.14609 -24.10357 -23.42693 -21.92930 -20.22971 -18.71463 -18.28639 -17.15025 -16.43853 -16.32854 -16.10971 -15.37255 -14.94722 -14.63076 -14.55228 -14.16805 -14.15767 -13.69842 -13.35052 -13.32185 -12.96411 -12.68786 -12.46766 -12.30254 -11.91638 -11.77383 -11.46274 -11.32822 -10.94449 -9.81830 -9.57544 -9.34405 -6.71256 0.45462 0.59230 1.36783 1.53576 1.63472 1.75894 2.13899 2.43121 2.95515 3.21348 3.40816 3.67761 3.92690 4.11188 4.32549 4.62807 4.70284 4.79685 4.81114 5.07846 5.17784 5.27872 5.40406 5.53310 5.67127 5.85801 6.22241 6.33417 6.62368 7.87374 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.024654 B = 0.009390 C = 0.007364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.461407 B = 2981.058924 C = 3801.194737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.348 3.652 3 F -0.209 7.209 4 F -0.212 7.212 5 C -0.277 4.277 6 C -0.037 4.037 7 C -0.246 4.246 8 C 0.091 3.909 9 C -0.515 4.515 10 H 0.063 0.937 11 C 0.014 3.986 12 N -0.823 5.823 13 Si 1.097 2.903 14 H -0.250 1.250 15 H -0.256 1.256 16 H -0.280 1.280 17 C -0.152 4.152 18 Cl -0.099 7.099 19 C -0.034 4.034 20 H 0.097 0.903 21 H 0.095 0.905 22 H 0.092 0.908 23 H 0.137 0.863 24 H 0.121 0.879 25 H 0.282 0.718 26 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.148 4.900 -8.399 12.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.312 3.688 3 F -0.190 7.190 4 F -0.193 7.193 5 C -0.279 4.279 6 C -0.055 4.055 7 C -0.265 4.265 8 C 0.088 3.912 9 C -0.543 4.543 10 H 0.082 0.918 11 C -0.203 4.203 12 N -0.445 5.445 13 Si 0.917 3.083 14 H -0.175 1.175 15 H -0.180 1.180 16 H -0.207 1.207 17 C -0.179 4.179 18 Cl -0.070 7.070 19 C -0.053 4.053 20 H 0.116 0.884 21 H 0.114 0.886 22 H 0.111 0.889 23 H 0.154 0.846 24 H 0.139 0.861 25 H 0.093 0.907 26 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.791 5.600 -7.249 12.025 hybrid contribution 1.730 -1.686 -0.947 2.595 sum -6.061 3.914 -8.196 10.919 Atomic orbital electron populations 1.22723 0.88661 1.06134 1.05967 1.19516 0.94747 0.73888 0.80621 1.92948 1.91102 1.38199 1.96756 1.92946 1.91116 1.81362 1.53924 1.19642 1.18192 0.94064 0.95978 1.20459 0.94124 0.99636 0.91311 1.20952 1.12304 0.93407 0.99804 1.17835 0.88991 0.92234 0.92187 1.20777 1.29041 1.11977 0.92505 0.91845 1.28414 1.00946 0.99694 0.91201 1.70595 1.16477 1.23218 1.34195 0.83333 0.73244 0.74908 0.76781 1.17543 1.18033 1.20674 1.20896 1.15790 0.83565 0.97650 1.98224 1.95510 1.14645 1.98669 1.20433 0.95367 0.93416 0.96074 0.88444 0.88622 0.88889 0.84552 0.86125 0.90672 0.85327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.99 9.37 71.98 0.67 -3.31 15 2 C 0.35 10.71 2.32 29.85 0.07 10.78 15 3 F -0.21 -6.63 16.18 44.97 0.73 -5.90 15 4 F -0.21 -6.92 16.19 44.97 0.73 -6.19 15 5 C -0.28 -10.16 5.01 -19.68 -0.10 -10.26 15 6 C -0.04 -1.40 9.32 21.99 0.20 -1.20 15 7 C -0.25 -10.65 7.22 22.49 0.16 -10.49 15 8 C 0.09 4.39 5.14 -21.27 -0.11 4.28 15 9 C -0.51 -26.77 8.85 23.44 0.21 -26.57 15 10 H 0.06 3.53 7.39 -2.91 -0.02 3.50 15 11 C 0.01 0.69 5.42 85.25 0.46 1.15 15 12 N -0.82 -42.90 13.65 21.82 0.30 -42.60 15 13 Si 1.10 44.69 24.90 68.60 1.71 46.39 15 14 H -0.25 -9.19 6.43 99.48 0.64 -8.55 15 15 H -0.26 -10.17 7.03 99.48 0.70 -9.47 15 16 H -0.28 -11.05 7.11 99.48 0.71 -10.34 15 17 C -0.15 -6.79 6.38 22.82 0.15 -6.64 15 18 Cl -0.10 -4.17 27.67 -2.72 -0.08 -4.24 15 19 C -0.03 -1.34 9.17 22.26 0.20 -1.13 15 20 H 0.10 2.01 8.14 -2.39 -0.02 1.99 15 21 H 0.09 1.72 8.14 -2.38 -0.02 1.70 15 22 H 0.09 1.99 8.14 -2.39 -0.02 1.97 15 23 H 0.14 4.35 7.58 -2.91 -0.02 4.33 15 24 H 0.12 5.08 4.39 -2.91 -0.01 5.07 15 25 H 0.28 14.64 8.73 -92.70 -0.81 13.84 15 26 H 0.13 4.57 7.59 -2.91 -0.02 4.54 15 Total: -1.00 -53.75 247.46 6.41 -47.34 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: 1.10 Total: 8.57 kcal Atomic # 6 Polarization: -45.30 SS G_CDS: 1.92 Total: -43.38 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: 0.30 Total: -42.60 kcal Atomic # 9 Polarization: -13.54 SS G_CDS: 1.46 Total: -12.09 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.71 Total: 46.39 kcal Atomic # 17 Polarization: -4.17 SS G_CDS: -0.08 Total: -4.24 kcal Total: -53.75 6.41 -47.34 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215811811.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.358 kcal (2) G-P(sol) polarization free energy of solvation -53.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds