Wall clock time and date at job start Mon Mar 30 2020 05:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 S 1.70991 * 125.55844 * 2 1 4 4 C 1.75904 * 90.77826 * 179.97438 * 3 2 1 5 5 C 1.47766 * 125.06606 * 179.97438 * 4 3 2 6 6 C 1.40045 * 120.56344 * 0.02613 * 5 4 3 7 7 C 1.38344 * 118.29239 * 179.97438 * 6 5 4 8 8 C 1.38369 * 119.30651 * 359.97438 * 7 6 5 9 9 N 1.31923 * 121.08894 * 0.03096 * 8 7 6 10 10 C 1.31699 * 121.88430 * 359.66948 * 9 8 7 11 11 N 1.29845 * 109.87233 * 0.02562 * 4 3 2 12 12 C 1.32763 * 116.00456 * 359.97438 * 11 4 3 13 13 C 1.41156 * 122.77077 * 180.27089 * 12 11 4 14 14 H 1.08005 * 120.00157 * 179.71191 * 13 12 11 15 15 C 1.39657 * 120.00234 * 359.71374 * 13 12 11 16 16 N 1.31053 * 119.99550 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00118 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47191 * 59.99801 * 17 15 13 19 19 H 1.48507 * 109.46874 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47186 * 299.99630 * 17 15 13 21 21 H 1.08995 * 109.47357 * 270.00420 * 1 2 3 22 22 H 1.09004 * 109.47245 * 30.00310 * 1 2 3 23 23 H 1.08996 * 109.47296 * 150.00111 * 1 2 3 24 24 H 1.08002 * 120.85634 * 359.95193 * 6 5 4 25 25 H 1.08000 * 120.34890 * 180.02562 * 7 6 5 26 26 H 1.07992 * 119.45483 * 180.02562 * 8 7 6 27 27 H 1.07998 * 119.72267 * 180.29151 * 10 9 8 28 28 H 0.97000 * 119.99811 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5013 1.3910 0.0000 4 6 3.9461 0.3876 0.0008 5 6 5.3333 0.8968 0.0006 6 6 5.5863 2.2741 0.0003 7 6 6.9029 2.6990 0.0007 8 6 7.9180 1.7586 0.0019 9 7 7.6500 0.4669 0.0021 10 6 6.4137 0.0130 0.0076 11 7 3.6121 -0.8671 0.0004 12 6 2.3093 -1.1226 0.0001 13 6 1.7879 -2.4344 0.0054 14 1 0.7193 -2.5908 0.0096 15 6 2.6539 -3.5300 0.0051 16 7 3.9506 -3.3402 -0.0005 17 14 1.9640 -5.2659 0.0127 18 1 1.1259 -5.4708 -1.1959 19 1 3.0823 -6.2430 0.0105 20 1 1.1355 -5.4639 1.2291 21 1 -0.3634 0.0001 1.0276 22 1 -0.3634 0.8900 -0.5139 23 1 -0.3634 -0.8900 -0.5138 24 1 4.7745 2.9865 -0.0005 25 1 7.1361 3.7535 0.0009 26 1 8.9466 2.0876 0.0027 27 1 6.2344 -1.0520 0.0123 28 1 4.5522 -4.1012 -0.0010 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221015531.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:15 Heat of formation + Delta-G solvation = 64.245543 kcal Electronic energy + Delta-G solvation = -14677.044357 eV Core-core repulsion = 12205.237067 eV Total energy + Delta-G solvation = -2471.807291 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.65418 -37.88139 -33.52042 -32.47829 -31.61598 -30.27150 -27.37176 -24.75690 -23.51471 -22.87703 -21.31500 -19.03276 -17.16325 -16.68953 -15.72801 -15.44937 -15.09618 -14.59902 -13.80133 -13.59564 -13.05511 -12.96306 -12.78207 -11.95618 -11.80624 -11.66211 -11.57324 -11.27352 -11.24653 -10.60723 -10.47679 -9.73789 -9.59624 -9.34627 -9.19355 -8.84973 -8.14715 -7.89858 -7.16368 -6.60243 -4.41076 1.05469 1.57729 2.45220 2.69118 3.05630 3.07502 3.09340 3.45609 3.95583 4.06997 4.42109 4.73960 5.00808 5.16373 5.28825 5.42290 5.43892 5.85456 6.10128 6.29272 6.31297 6.45757 6.54142 6.56941 6.85691 7.00104 7.07809 7.18763 7.47124 8.11319 8.31996 8.46625 8.80999 9.47042 10.27727 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.023676 B = 0.008182 C = 0.006101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.364783 B = 3421.390944 C = 4588.606146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 C -0.416 4.416 3 S -0.005 6.005 4 C 0.068 3.932 5 C -0.040 4.040 6 C -0.072 4.072 7 C -0.175 4.175 8 C 0.084 3.916 9 N -0.487 5.487 10 C 0.137 3.863 11 N -0.381 5.381 12 C 0.226 3.774 13 C -0.426 4.426 14 H 0.087 0.913 15 C 0.071 3.929 16 N -0.751 5.751 17 Si 0.912 3.088 18 H -0.265 1.265 19 H -0.278 1.278 20 H -0.265 1.265 21 H 0.038 0.962 22 H 0.035 0.965 23 H 0.058 0.942 24 H 0.133 0.867 25 H 0.132 0.868 26 H 0.151 0.849 27 H 0.175 0.825 28 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.827 7.027 -0.020 7.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.537 4.537 3 S 0.246 5.754 4 C -0.211 4.211 5 C -0.046 4.046 6 C -0.100 4.100 7 C -0.195 4.195 8 C -0.074 4.074 9 N -0.195 5.195 10 C -0.024 4.024 11 N -0.095 5.095 12 C 0.102 3.898 13 C -0.460 4.460 14 H 0.105 0.895 15 C -0.151 4.151 16 N -0.374 5.374 17 Si 0.737 3.263 18 H -0.190 1.190 19 H -0.202 1.202 20 H -0.190 1.190 21 H 0.057 0.943 22 H 0.054 0.946 23 H 0.077 0.923 24 H 0.151 0.849 25 H 0.150 0.850 26 H 0.168 0.832 27 H 0.192 0.808 28 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.900 6.921 -0.025 7.944 hybrid contribution -1.402 -0.998 0.007 1.721 sum 2.499 5.923 -0.018 6.428 Atomic orbital electron populations 1.19496 0.89566 0.99923 0.99333 1.24217 0.99319 0.93365 1.36817 1.82400 1.01621 1.14430 1.76921 1.25469 0.94563 0.92011 1.09010 1.19080 0.91280 0.93459 1.00751 1.21622 0.97262 0.94584 0.96512 1.21919 0.93167 1.00965 1.03466 1.22759 0.99441 0.88719 0.96465 1.67744 1.22877 1.16514 1.12358 1.23265 0.85738 1.01424 0.91929 1.67417 1.18113 1.13229 1.10709 1.17716 0.84123 0.93916 0.94051 1.18943 0.94375 0.87944 1.44705 0.89529 1.25975 0.94695 1.01408 0.93047 1.70069 1.02767 1.32622 1.31916 0.86305 0.79323 0.80891 0.79821 1.19000 1.20242 1.18989 0.94322 0.94586 0.92336 0.84898 0.84965 0.83216 0.80758 0.91318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.49 9.99 36.00 0.36 -0.13 15 2 C -0.42 -10.14 6.48 -34.40 -0.22 -10.36 15 3 S -0.01 -0.11 22.14 -107.50 -2.38 -2.49 15 4 C 0.07 1.57 7.31 -14.50 -0.11 1.47 15 5 C -0.04 -0.79 5.89 -104.82 -0.62 -1.41 15 6 C -0.07 -1.16 9.71 -38.87 -0.38 -1.54 15 7 C -0.18 -2.35 10.10 -39.49 -0.40 -2.75 15 8 C 0.08 1.20 11.17 -17.46 -0.20 1.01 15 9 N -0.49 -8.72 10.35 -12.89 -0.13 -8.86 15 10 C 0.14 2.73 10.85 -17.11 -0.19 2.54 15 11 N -0.38 -10.10 8.01 -9.17 -0.07 -10.17 15 12 C 0.23 6.11 6.45 -86.45 -0.56 5.56 15 13 C -0.43 -11.34 8.90 -37.95 -0.34 -11.68 15 14 H 0.09 2.18 6.76 -52.48 -0.35 1.82 15 15 C 0.07 1.81 5.49 -17.35 -0.10 1.71 15 16 N -0.75 -19.69 11.69 55.53 0.65 -19.04 15 17 Si 0.91 18.77 29.56 -169.99 -5.02 13.75 15 18 H -0.27 -5.39 7.11 56.52 0.40 -4.99 15 19 H -0.28 -5.58 7.11 56.52 0.40 -5.18 15 20 H -0.27 -5.39 7.11 56.52 0.40 -4.99 15 21 H 0.04 0.76 8.14 -51.93 -0.42 0.33 15 22 H 0.04 0.66 8.14 -51.93 -0.42 0.24 15 23 H 0.06 1.20 7.09 -51.93 -0.37 0.83 15 24 H 0.13 1.94 7.38 -52.49 -0.39 1.56 15 25 H 0.13 1.28 8.06 -52.49 -0.42 0.86 15 26 H 0.15 1.60 8.06 -52.49 -0.42 1.17 15 27 H 0.18 3.80 7.81 -52.49 -0.41 3.39 15 28 H 0.28 6.64 8.30 -40.82 -0.34 6.30 15 LS Contribution 265.14 15.07 4.00 4.00 Total: -1.00 -29.02 265.14 -8.05 -37.06 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -2.35 Total: 1.34 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: -2.73 Total: -15.58 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.44 Total: -38.07 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.02 Total: 13.75 kcal Atomic # 16 Polarization: -0.11 SS G_CDS: -2.38 Total: -2.49 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.02 -8.05 -37.06 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221015531.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.307 kcal (2) G-P(sol) polarization free energy of solvation -29.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds