Wall clock time and date at job start Mon Mar 30 2020 05:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 S 1.70991 * 125.55844 * 2 1 4 4 C 1.75904 * 90.77826 * 179.97438 * 3 2 1 5 5 C 1.47766 * 125.06606 * 179.97438 * 4 3 2 6 6 C 1.40045 * 120.56344 * 0.02613 * 5 4 3 7 7 C 1.38344 * 118.29239 * 179.97438 * 6 5 4 8 8 C 1.38369 * 119.30651 * 359.97438 * 7 6 5 9 9 N 1.31923 * 121.08894 * 0.03096 * 8 7 6 10 10 C 1.31699 * 121.88430 * 359.66948 * 9 8 7 11 11 N 1.29845 * 109.87233 * 0.02562 * 4 3 2 12 12 C 1.32763 * 116.00456 * 359.97438 * 11 4 3 13 13 C 1.41156 * 122.77077 * 180.27089 * 12 11 4 14 14 H 1.08005 * 120.00157 * 179.71191 * 13 12 11 15 15 C 1.39657 * 120.00234 * 359.71374 * 13 12 11 16 16 N 1.31053 * 119.99550 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00118 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47191 * 59.99801 * 17 15 13 19 19 H 1.48507 * 109.46874 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47186 * 299.99630 * 17 15 13 21 21 H 1.08995 * 109.47357 * 270.00420 * 1 2 3 22 22 H 1.09004 * 109.47245 * 30.00310 * 1 2 3 23 23 H 1.08996 * 109.47296 * 150.00111 * 1 2 3 24 24 H 1.08002 * 120.85634 * 359.95193 * 6 5 4 25 25 H 1.08000 * 120.34890 * 180.02562 * 7 6 5 26 26 H 1.07992 * 119.45483 * 180.02562 * 8 7 6 27 27 H 1.07998 * 119.72267 * 180.29151 * 10 9 8 28 28 H 0.97000 * 119.99811 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5013 1.3910 0.0000 4 6 3.9461 0.3876 0.0008 5 6 5.3333 0.8968 0.0006 6 6 5.5863 2.2741 0.0003 7 6 6.9029 2.6990 0.0007 8 6 7.9180 1.7586 0.0019 9 7 7.6500 0.4669 0.0021 10 6 6.4137 0.0130 0.0076 11 7 3.6121 -0.8671 0.0004 12 6 2.3093 -1.1226 0.0001 13 6 1.7879 -2.4344 0.0054 14 1 0.7193 -2.5908 0.0096 15 6 2.6539 -3.5300 0.0051 16 7 3.9506 -3.3402 -0.0005 17 14 1.9640 -5.2659 0.0127 18 1 1.1259 -5.4708 -1.1959 19 1 3.0823 -6.2430 0.0105 20 1 1.1355 -5.4639 1.2291 21 1 -0.3634 0.0001 1.0276 22 1 -0.3634 0.8900 -0.5139 23 1 -0.3634 -0.8900 -0.5138 24 1 4.7745 2.9865 -0.0005 25 1 7.1361 3.7535 0.0009 26 1 8.9466 2.0876 0.0027 27 1 6.2344 -1.0520 0.0123 28 1 4.5522 -4.1012 -0.0010 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221015531.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:14 Heat of formation + Delta-G solvation = 46.610857 kcal Electronic energy + Delta-G solvation = -14677.809055 eV Core-core repulsion = 12205.237067 eV Total energy + Delta-G solvation = -2472.571988 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.00985 -39.67538 -35.30459 -34.05433 -33.03929 -31.79705 -29.19985 -26.38866 -25.11937 -24.29655 -22.91902 -20.79223 -18.91736 -18.02137 -17.38514 -17.10303 -16.59588 -16.18571 -15.39788 -15.06269 -14.61850 -14.55762 -14.06733 -13.63798 -13.47517 -13.33095 -13.25242 -12.90761 -12.74712 -12.37330 -12.22013 -11.39094 -11.35631 -10.86359 -10.55288 -10.28933 -9.90317 -9.67082 -8.93775 -8.44643 -6.34979 -0.42032 0.29564 0.80907 0.93922 1.37077 1.43407 1.49535 1.63061 2.22854 2.36462 2.94251 3.34405 3.49909 3.66428 3.98592 4.00522 4.21631 4.57804 4.65621 4.73539 4.84670 4.92188 4.95749 5.14784 5.24842 5.32930 5.39149 5.61690 5.77588 6.17543 6.56569 6.89024 7.01365 7.65643 8.44546 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.023676 B = 0.008182 C = 0.006101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.364783 B = 3421.390944 C = 4588.606146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 C -0.442 4.442 3 S 0.057 5.943 4 C 0.061 3.939 5 C -0.074 4.074 6 C -0.067 4.067 7 C -0.152 4.152 8 C 0.093 3.907 9 N -0.507 5.507 10 C 0.120 3.880 11 N -0.428 5.428 12 C 0.191 3.809 13 C -0.465 4.465 14 H 0.089 0.911 15 C 0.027 3.973 16 N -0.787 5.787 17 Si 0.987 3.013 18 H -0.259 1.259 19 H -0.271 1.271 20 H -0.259 1.259 21 H 0.048 0.952 22 H 0.058 0.942 23 H 0.054 0.946 24 H 0.150 0.850 25 H 0.186 0.814 26 H 0.197 0.803 27 H 0.139 0.861 28 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.538 9.365 -0.020 10.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.563 4.563 3 S 0.309 5.691 4 C -0.217 4.217 5 C -0.080 4.080 6 C -0.095 4.095 7 C -0.171 4.171 8 C -0.065 4.065 9 N -0.215 5.215 10 C -0.040 4.040 11 N -0.143 5.143 12 C 0.066 3.934 13 C -0.499 4.499 14 H 0.107 0.893 15 C -0.192 4.192 16 N -0.411 5.411 17 Si 0.807 3.193 18 H -0.184 1.184 19 H -0.195 1.195 20 H -0.184 1.184 21 H 0.066 0.934 22 H 0.077 0.923 23 H 0.073 0.927 24 H 0.168 0.832 25 H 0.204 0.796 26 H 0.213 0.787 27 H 0.156 0.844 28 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.588 9.281 -0.025 10.353 hybrid contribution -1.464 -1.437 0.009 2.052 sum 3.124 7.843 -0.017 8.443 Atomic orbital electron populations 1.19545 0.87488 1.00846 1.00187 1.24881 1.01382 0.94369 1.35677 1.81871 0.99463 1.11980 1.75768 1.26160 0.96784 0.91842 1.06961 1.19145 0.89494 0.95369 1.04010 1.21909 0.99427 0.92770 0.95393 1.22460 0.91217 1.03415 1.00011 1.23626 1.02043 0.87369 0.93474 1.67733 1.21574 1.18983 1.13254 1.22770 0.87029 1.00159 0.93996 1.67408 1.18278 1.15203 1.13409 1.18184 0.85065 0.95109 0.95034 1.19264 0.94827 0.88986 1.46808 0.89300 1.26870 0.94795 1.05399 0.92144 1.70201 1.04027 1.33777 1.33135 0.85189 0.78644 0.75456 0.79977 1.18363 1.19519 1.18377 0.93375 0.92300 0.92724 0.83197 0.79639 0.78662 0.84389 0.91133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.88 9.99 71.23 0.71 -0.17 15 2 C -0.44 -21.83 6.48 25.62 0.17 -21.67 15 3 S 0.06 2.39 22.14 -56.49 -1.25 1.14 15 4 C 0.06 2.89 7.31 87.51 0.64 3.53 15 5 C -0.07 -2.97 5.89 -19.99 -0.12 -3.08 15 6 C -0.07 -1.98 9.71 22.73 0.22 -1.76 15 7 C -0.15 -3.31 10.10 22.33 0.23 -3.09 15 8 C 0.09 2.29 11.17 84.71 0.95 3.24 15 9 N -0.51 -17.72 10.35 -194.70 -2.01 -19.73 15 10 C 0.12 4.95 10.85 85.04 0.92 5.88 15 11 N -0.43 -23.93 8.01 -182.94 -1.46 -25.39 15 12 C 0.19 10.75 6.45 39.66 0.26 11.00 15 13 C -0.46 -25.91 8.90 23.33 0.21 -25.70 15 14 H 0.09 4.66 6.76 -2.91 -0.02 4.64 15 15 C 0.03 1.41 5.49 85.15 0.47 1.87 15 16 N -0.79 -43.74 11.69 21.78 0.25 -43.49 15 17 Si 0.99 39.79 29.56 68.60 2.03 41.82 15 18 H -0.26 -10.08 7.11 99.48 0.71 -9.37 15 19 H -0.27 -10.45 7.11 99.48 0.71 -9.75 15 20 H -0.26 -10.10 7.11 99.48 0.71 -9.39 15 21 H 0.05 1.86 8.14 -2.39 -0.02 1.84 15 22 H 0.06 2.10 8.14 -2.39 -0.02 2.08 15 23 H 0.05 2.25 7.09 -2.39 -0.02 2.23 15 24 H 0.15 3.84 7.38 -2.91 -0.02 3.82 15 25 H 0.19 2.17 8.06 -2.91 -0.02 2.15 15 26 H 0.20 3.01 8.06 -2.91 -0.02 2.99 15 27 H 0.14 6.61 7.81 -2.91 -0.02 6.59 15 28 H 0.28 14.19 8.30 -92.71 -0.77 13.42 15 Total: -1.00 -67.72 265.14 3.38 -64.34 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: 1.18 Total: 11.25 kcal Atomic # 6 Polarization: -34.59 SS G_CDS: 4.65 Total: -29.94 kcal Atomic # 7 Polarization: -85.39 SS G_CDS: -3.22 Total: -88.61 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.82 kcal Atomic # 16 Polarization: 2.39 SS G_CDS: -1.25 Total: 1.14 kcal Total: -67.72 3.38 -64.34 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221015531.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.950 kcal (2) G-P(sol) polarization free energy of solvation -67.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds