Wall clock time and date at job start Mon Mar 30 2020 05:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 S 1.70992 * 125.56610 * 2 1 4 4 C 1.75910 * 90.77045 * 179.97438 * 3 2 1 5 5 C 1.47818 * 125.06533 * 180.02562 * 4 3 2 6 6 C 1.40006 * 120.93202 * 0.02562 * 5 4 3 7 7 C 1.37956 * 118.99141 * 180.02562 * 6 5 4 8 8 N 1.31927 * 120.90804 * 0.02562 * 7 6 5 9 9 C 1.31927 * 122.06458 * 359.97438 * 8 7 6 10 10 C 1.37956 * 120.90863 * 0.02562 * 9 8 7 11 11 N 1.29819 * 109.87261 * 0.26080 * 4 3 2 12 12 C 1.32696 * 116.03191 * 359.52272 * 11 4 3 13 13 C 1.41168 * 122.77871 * 180.19998 * 12 11 4 14 14 H 1.07995 * 119.99950 * 174.34381 * 13 12 11 15 15 C 1.39683 * 119.99598 * 354.33885 * 13 12 11 16 16 N 1.31033 * 120.00020 * 6.20889 * 15 13 12 17 17 Si 1.86801 * 119.99922 * 186.20013 * 15 13 12 18 18 H 1.48501 * 109.47086 * 94.98890 * 17 15 13 19 19 H 1.48506 * 109.47013 * 214.98857 * 17 15 13 20 20 H 1.48496 * 109.46960 * 334.98558 * 17 15 13 21 21 H 1.09005 * 109.46519 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.47254 * 119.97158 * 1 2 3 23 23 H 1.08999 * 109.47699 * 239.98058 * 1 2 3 24 24 H 1.08003 * 120.50158 * 359.97438 * 6 5 4 25 25 H 1.08001 * 119.54310 * 179.97438 * 7 6 5 26 26 H 1.08006 * 119.54561 * 179.97438 * 9 8 7 27 27 H 1.08003 * 120.49992 * 180.02562 * 10 9 8 28 28 H 0.97004 * 119.99944 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5016 1.3909 0.0000 4 6 3.9461 0.3871 0.0008 5 6 5.3339 0.8960 0.0017 6 6 5.5961 2.2713 0.0025 7 6 6.9067 2.7022 0.0028 8 7 7.9039 1.8385 0.0018 9 6 7.7014 0.5349 0.0010 10 6 6.4231 0.0163 0.0006 11 7 3.6118 -0.8673 -0.0046 12 6 2.3097 -1.1230 0.0006 13 6 1.7885 -2.4349 0.0000 14 1 0.7246 -2.5933 0.0966 15 6 2.6489 -3.5281 -0.1255 16 7 3.9463 -3.3448 -0.1203 17 14 1.9499 -5.2516 -0.3005 18 1 1.8621 -5.6063 -1.7399 19 1 2.8372 -6.2186 0.3944 20 1 0.5947 -5.2999 0.3048 21 1 -0.3632 1.0278 0.0005 22 1 -0.3634 -0.5134 -0.8903 23 1 -0.3634 -0.5141 0.8898 24 1 4.7847 2.9841 0.0021 25 1 7.1191 3.7611 0.0031 26 1 8.5482 -0.1356 -0.0002 27 1 6.2649 -1.0521 0.0004 28 1 4.5438 -4.1040 -0.2071 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221015622.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:17 Heat of formation + Delta-G solvation = 63.859521 kcal Electronic energy + Delta-G solvation = -14666.744199 eV Core-core repulsion = 12194.920169 eV Total energy + Delta-G solvation = -2471.824030 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.63226 -37.93722 -33.63773 -32.55279 -30.91344 -30.65986 -27.48976 -24.93929 -23.50574 -22.83784 -21.32825 -19.10711 -17.19268 -16.45435 -15.50239 -15.35721 -15.17585 -14.85273 -13.78661 -13.58254 -13.27321 -13.11706 -12.79186 -11.97832 -11.83404 -11.66824 -11.42030 -11.32074 -11.18555 -10.66556 -10.48588 -9.76900 -9.65460 -9.20267 -9.16529 -8.82048 -8.21533 -7.95509 -7.25921 -6.64872 -4.44752 1.09973 1.51407 2.48137 2.65148 3.01138 3.05227 3.08574 3.40314 3.92274 4.06612 4.39464 4.75070 4.82932 5.26440 5.37705 5.46298 5.56310 5.96093 6.07252 6.23200 6.25522 6.47745 6.56752 6.66757 6.85010 6.98150 7.05177 7.13054 7.42271 8.09236 8.27321 8.42375 8.77588 9.42837 10.23438 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.023759 B = 0.008112 C = 0.006070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.227862 B = 3450.802978 C = 4611.601544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 C -0.411 4.411 3 S 0.005 5.995 4 C 0.054 3.946 5 C 0.054 3.946 6 C -0.168 4.168 7 C 0.093 3.907 8 N -0.497 5.497 9 C 0.091 3.909 10 C -0.134 4.134 11 N -0.375 5.375 12 C 0.222 3.778 13 C -0.425 4.425 14 H 0.087 0.913 15 C 0.072 3.928 16 N -0.751 5.751 17 Si 0.912 3.088 18 H -0.270 1.270 19 H -0.276 1.276 20 H -0.262 1.262 21 H 0.037 0.963 22 H 0.048 0.952 23 H 0.047 0.953 24 H 0.133 0.867 25 H 0.153 0.847 26 H 0.154 0.846 27 H 0.153 0.847 28 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.246 5.103 -0.053 5.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.533 4.533 3 S 0.257 5.743 4 C -0.223 4.223 5 C 0.042 3.958 6 C -0.190 4.190 7 C -0.064 4.064 8 N -0.207 5.207 9 C -0.065 4.065 10 C -0.157 4.157 11 N -0.090 5.090 12 C 0.097 3.903 13 C -0.459 4.459 14 H 0.105 0.895 15 C -0.151 4.151 16 N -0.374 5.374 17 Si 0.736 3.264 18 H -0.195 1.195 19 H -0.201 1.201 20 H -0.185 1.185 21 H 0.056 0.944 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.151 0.849 25 H 0.170 0.830 26 H 0.171 0.829 27 H 0.170 0.830 28 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.489 5.919 -0.066 6.871 hybrid contribution -1.597 -2.044 -0.096 2.596 sum 1.891 3.876 -0.162 4.315 Atomic orbital electron populations 1.19476 0.89459 0.98902 1.00321 1.24335 0.99437 0.93507 1.35982 1.82443 1.01358 1.14122 1.76388 1.25523 0.94760 0.92073 1.09957 1.18400 0.90145 0.92648 0.94573 1.22168 0.98682 0.95078 1.03070 1.22473 0.87960 0.99320 0.96615 1.67554 1.36401 1.03761 1.12982 1.22642 0.96119 0.91473 0.96253 1.22470 0.91971 1.02536 0.98695 1.67378 1.18159 1.13343 1.10084 1.17735 0.84123 0.93981 0.94430 1.18981 0.94862 0.87969 1.44064 0.89466 1.25985 0.94675 1.01356 0.93086 1.70088 1.02942 1.32376 1.31999 0.86234 0.79953 0.81010 0.79170 1.19499 1.20143 1.18543 0.94414 0.93329 0.93416 0.84914 0.82974 0.82853 0.82975 0.91459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.45 9.58 36.01 0.34 -0.11 15 2 C -0.41 -9.93 6.48 -34.38 -0.22 -10.15 15 3 S 0.01 0.11 22.16 -107.50 -2.38 -2.27 15 4 C 0.05 1.25 7.32 -14.48 -0.11 1.14 15 5 C 0.05 1.07 5.91 -104.65 -0.62 0.46 15 6 C -0.17 -2.76 9.68 -39.02 -0.38 -3.14 15 7 C 0.09 1.38 11.17 -17.61 -0.20 1.18 15 8 N -0.50 -8.04 10.34 -13.35 -0.14 -8.18 15 9 C 0.09 1.46 11.17 -17.61 -0.20 1.26 15 10 C -0.13 -2.49 9.77 -39.02 -0.38 -2.87 15 11 N -0.37 -9.90 8.10 -9.16 -0.07 -9.97 15 12 C 0.22 5.96 6.45 -86.45 -0.56 5.41 15 13 C -0.42 -11.25 8.96 -37.93 -0.34 -11.58 15 14 H 0.09 2.19 7.38 -52.49 -0.39 1.81 15 15 C 0.07 1.80 5.48 -17.35 -0.10 1.70 15 16 N -0.75 -19.46 11.72 55.53 0.65 -18.81 15 17 Si 0.91 18.59 29.56 -169.99 -5.03 13.56 15 18 H -0.27 -5.45 7.11 56.52 0.40 -5.05 15 19 H -0.28 -5.51 7.11 56.52 0.40 -5.11 15 20 H -0.26 -5.24 7.11 56.52 0.40 -4.84 15 21 H 0.04 0.68 8.14 -51.93 -0.42 0.26 15 22 H 0.05 0.97 8.14 -51.93 -0.42 0.54 15 23 H 0.05 0.95 8.14 -51.93 -0.42 0.52 15 24 H 0.13 1.97 7.40 -52.48 -0.39 1.58 15 25 H 0.15 1.70 8.06 -52.49 -0.42 1.28 15 26 H 0.15 1.98 8.06 -52.48 -0.42 1.55 15 27 H 0.15 3.06 7.89 -52.48 -0.41 2.65 15 28 H 0.27 6.47 8.30 -40.82 -0.34 6.13 15 LS Contribution 266.68 15.07 4.02 4.02 Total: -1.00 -28.91 266.68 -8.14 -37.05 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -2.44 Total: 1.31 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: -2.75 Total: -16.72 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.44 Total: -36.96 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Atomic # 16 Polarization: 0.11 SS G_CDS: -2.38 Total: -2.27 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -28.91 -8.14 -37.05 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221015622.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.906 kcal (2) G-P(sol) polarization free energy of solvation -28.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds