Wall clock time and date at job start Mon Mar 30 2020 05:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 S 1.70992 * 125.56610 * 2 1 4 4 C 1.75910 * 90.77045 * 179.97438 * 3 2 1 5 5 C 1.47818 * 125.06533 * 180.02562 * 4 3 2 6 6 C 1.40006 * 120.93202 * 0.02562 * 5 4 3 7 7 C 1.37956 * 118.99141 * 180.02562 * 6 5 4 8 8 N 1.31927 * 120.90804 * 0.02562 * 7 6 5 9 9 C 1.31927 * 122.06458 * 359.97438 * 8 7 6 10 10 C 1.37956 * 120.90863 * 0.02562 * 9 8 7 11 11 N 1.29819 * 109.87261 * 0.26080 * 4 3 2 12 12 C 1.32696 * 116.03191 * 359.52272 * 11 4 3 13 13 C 1.41168 * 122.77871 * 180.19998 * 12 11 4 14 14 H 1.07995 * 119.99950 * 174.34381 * 13 12 11 15 15 C 1.39683 * 119.99598 * 354.33885 * 13 12 11 16 16 N 1.31033 * 120.00020 * 6.20889 * 15 13 12 17 17 Si 1.86801 * 119.99922 * 186.20013 * 15 13 12 18 18 H 1.48501 * 109.47086 * 94.98890 * 17 15 13 19 19 H 1.48506 * 109.47013 * 214.98857 * 17 15 13 20 20 H 1.48496 * 109.46960 * 334.98558 * 17 15 13 21 21 H 1.09005 * 109.46519 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.47254 * 119.97158 * 1 2 3 23 23 H 1.08999 * 109.47699 * 239.98058 * 1 2 3 24 24 H 1.08003 * 120.50158 * 359.97438 * 6 5 4 25 25 H 1.08001 * 119.54310 * 179.97438 * 7 6 5 26 26 H 1.08006 * 119.54561 * 179.97438 * 9 8 7 27 27 H 1.08003 * 120.49992 * 180.02562 * 10 9 8 28 28 H 0.97004 * 119.99944 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5016 1.3909 0.0000 4 6 3.9461 0.3871 0.0008 5 6 5.3339 0.8960 0.0017 6 6 5.5961 2.2713 0.0025 7 6 6.9067 2.7022 0.0028 8 7 7.9039 1.8385 0.0018 9 6 7.7014 0.5349 0.0010 10 6 6.4231 0.0163 0.0006 11 7 3.6118 -0.8673 -0.0046 12 6 2.3097 -1.1230 0.0006 13 6 1.7885 -2.4349 0.0000 14 1 0.7246 -2.5933 0.0966 15 6 2.6489 -3.5281 -0.1255 16 7 3.9463 -3.3448 -0.1203 17 14 1.9499 -5.2516 -0.3005 18 1 1.8621 -5.6063 -1.7399 19 1 2.8372 -6.2186 0.3944 20 1 0.5947 -5.2999 0.3048 21 1 -0.3632 1.0278 0.0005 22 1 -0.3634 -0.5134 -0.8903 23 1 -0.3634 -0.5141 0.8898 24 1 4.7847 2.9841 0.0021 25 1 7.1191 3.7611 0.0031 26 1 8.5482 -0.1356 -0.0002 27 1 6.2649 -1.0521 0.0004 28 1 4.5438 -4.1040 -0.2071 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221015622.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:17 Heat of formation + Delta-G solvation = 46.889849 kcal Electronic energy + Delta-G solvation = -14667.480059 eV Core-core repulsion = 12194.920169 eV Total energy + Delta-G solvation = -2472.559890 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.99095 -39.72171 -35.37785 -34.18517 -32.38458 -32.13195 -29.30495 -26.59350 -25.14659 -24.22088 -22.93770 -20.83812 -18.94743 -17.98499 -17.25097 -16.82068 -16.55455 -16.45135 -15.39152 -15.19244 -14.64567 -14.53248 -14.43901 -13.64208 -13.50037 -13.38972 -13.09092 -12.96018 -12.64984 -12.39926 -12.16821 -11.43255 -11.41086 -10.83296 -10.53173 -10.10167 -10.00459 -9.72575 -9.06039 -8.47481 -6.36955 -0.45136 0.22263 0.83040 0.90776 1.36727 1.41130 1.50487 1.59273 2.21836 2.35159 2.94607 3.29610 3.46573 3.59869 4.01259 4.12120 4.20915 4.57943 4.62149 4.67053 4.81360 4.92838 4.94724 5.11155 5.27542 5.31901 5.41117 5.58590 5.74230 6.16642 6.54030 6.87426 6.99074 7.61423 8.42711 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.023759 B = 0.008112 C = 0.006070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.227862 B = 3450.802978 C = 4611.601544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 C -0.436 4.436 3 S 0.066 5.934 4 C 0.044 3.956 5 C 0.021 3.979 6 C -0.162 4.162 7 C 0.106 3.894 8 N -0.500 5.500 9 C 0.101 3.899 10 C -0.149 4.149 11 N -0.420 5.420 12 C 0.186 3.814 13 C -0.463 4.463 14 H 0.088 0.912 15 C 0.028 3.972 16 N -0.786 5.786 17 Si 0.987 3.013 18 H -0.266 1.266 19 H -0.269 1.269 20 H -0.256 1.256 21 H 0.062 0.938 22 H 0.050 0.950 23 H 0.049 0.951 24 H 0.150 0.850 25 H 0.198 0.802 26 H 0.183 0.817 27 H 0.126 0.874 28 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.703 6.557 -0.128 7.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.557 4.557 3 S 0.319 5.681 4 C -0.233 4.233 5 C 0.010 3.990 6 C -0.184 4.184 7 C -0.051 4.051 8 N -0.210 5.210 9 C -0.054 4.054 10 C -0.172 4.172 11 N -0.135 5.135 12 C 0.061 3.939 13 C -0.497 4.497 14 H 0.106 0.894 15 C -0.191 4.191 16 N -0.410 5.410 17 Si 0.807 3.193 18 H -0.191 1.191 19 H -0.193 1.193 20 H -0.180 1.180 21 H 0.081 0.919 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.168 0.832 25 H 0.215 0.785 26 H 0.200 0.800 27 H 0.144 0.856 28 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.937 7.403 -0.138 8.386 hybrid contribution -1.659 -2.271 -0.065 2.813 sum 2.278 5.132 -0.203 5.618 Atomic orbital electron populations 1.19526 0.87368 1.00519 1.00483 1.24995 1.01499 0.94450 1.34775 1.81952 0.99279 1.11765 1.75124 1.26209 0.96952 0.91959 1.08160 1.18605 0.88806 0.94490 0.97133 1.22379 1.00208 0.93580 1.02186 1.23172 0.86774 1.01146 0.93980 1.67707 1.36782 1.03685 1.12778 1.22995 0.95724 0.92063 0.94647 1.22364 0.93190 1.01348 1.00318 1.67363 1.18328 1.15192 1.12617 1.18195 0.85056 0.95160 0.95456 1.19273 0.95245 0.89011 1.46214 0.89418 1.26859 0.94830 1.05190 0.92256 1.70193 1.04162 1.33682 1.32969 0.85122 0.79301 0.75686 0.79162 1.19063 1.19329 1.17964 0.91949 0.93152 0.93236 0.83205 0.78517 0.79976 0.85558 0.91041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.80 9.58 71.24 0.68 -0.11 15 2 C -0.44 -21.21 6.48 25.64 0.17 -21.05 15 3 S 0.07 2.77 22.16 -56.49 -1.25 1.52 15 4 C 0.04 2.07 7.32 87.53 0.64 2.71 15 5 C 0.02 0.85 5.91 -19.89 -0.12 0.73 15 6 C -0.16 -4.93 9.68 22.63 0.22 -4.71 15 7 C 0.11 2.74 11.17 84.61 0.95 3.68 15 8 N -0.50 -14.65 10.34 -196.15 -2.03 -16.68 15 9 C 0.10 3.09 11.17 84.61 0.95 4.03 15 10 C -0.15 -5.62 9.77 22.63 0.22 -5.40 15 11 N -0.42 -23.02 8.10 -182.89 -1.48 -24.51 15 12 C 0.19 10.35 6.45 39.69 0.26 10.61 15 13 C -0.46 -25.46 8.96 23.34 0.21 -25.25 15 14 H 0.09 4.57 7.38 -2.91 -0.02 4.55 15 15 C 0.03 1.43 5.48 85.16 0.47 1.89 15 16 N -0.79 -42.49 11.72 21.79 0.26 -42.24 15 17 Si 0.99 38.99 29.56 68.60 2.03 41.02 15 18 H -0.27 -10.21 7.11 99.48 0.71 -9.51 15 19 H -0.27 -10.15 7.11 99.48 0.71 -9.44 15 20 H -0.26 -9.75 7.11 99.48 0.71 -9.04 15 21 H 0.06 2.15 8.14 -2.38 -0.02 2.13 15 22 H 0.05 1.99 8.14 -2.38 -0.02 1.97 15 23 H 0.05 1.96 8.14 -2.39 -0.02 1.94 15 24 H 0.15 3.98 7.40 -2.91 -0.02 3.96 15 25 H 0.20 3.32 8.06 -2.91 -0.02 3.30 15 26 H 0.18 4.34 8.06 -2.91 -0.02 4.31 15 27 H 0.13 5.40 7.89 -2.91 -0.02 5.38 15 28 H 0.28 13.69 8.30 -92.71 -0.77 12.92 15 Total: -1.00 -64.60 266.68 3.34 -61.26 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 1.18 Total: 12.48 kcal Atomic # 6 Polarization: -37.49 SS G_CDS: 4.63 Total: -32.86 kcal Atomic # 7 Polarization: -80.16 SS G_CDS: -3.25 Total: -83.42 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 2.03 Total: 41.02 kcal Atomic # 16 Polarization: 2.77 SS G_CDS: -1.25 Total: 1.52 kcal Total: -64.60 3.34 -61.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221015622.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.154 kcal (2) G-P(sol) polarization free energy of solvation -64.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds