Wall clock time and date at job start Mon Mar 30 2020 06:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35909 * 116.99935 * 2 1 4 4 C 1.39156 * 119.93191 * 359.97438 * 3 2 1 5 5 C 1.38523 * 120.44296 * 180.27788 * 4 3 2 6 6 C 1.37668 * 120.30323 * 359.44481 * 5 4 3 7 7 C 1.50696 * 120.07392 * 180.25537 * 6 5 4 8 8 F 1.39905 * 109.47010 * 0.32253 * 7 6 5 9 9 F 1.39899 * 109.47364 * 120.31999 * 7 6 5 10 10 F 1.39895 * 109.47193 * 240.32438 * 7 6 5 11 11 C 1.40741 * 119.85412 * 0.57801 * 6 5 4 12 12 C 1.41402 * 120.21420 * 179.67994 * 11 6 5 13 13 H 1.07999 * 120.00395 * 25.26859 * 12 11 6 14 14 C 1.39935 * 119.99759 * 205.27531 * 12 11 6 15 15 N 1.30830 * 120.00184 * 15.41295 * 14 12 11 16 16 Si 1.86798 * 119.99930 * 195.42117 * 14 12 11 17 17 H 1.48499 * 109.47193 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47228 * 119.99775 * 16 14 12 19 19 H 1.48508 * 109.46834 * 239.99334 * 16 14 12 20 20 C 1.38098 * 119.93126 * 180.02562 * 3 2 1 21 21 H 1.09002 * 109.47460 * 59.99611 * 1 2 3 22 22 H 1.08995 * 109.47374 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46941 * 300.00085 * 1 2 3 24 24 H 1.07998 * 119.77670 * 0.02562 * 4 3 2 25 25 H 1.07996 * 119.84332 * 179.70669 * 5 4 3 26 26 H 0.96996 * 120.00412 * 180.02562 * 15 14 12 27 27 H 1.07999 * 120.14994 * 359.97438 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2867 2.3771 -0.0005 5 6 1.9045 3.6169 -0.0063 6 6 3.2781 3.7086 -0.0001 7 6 3.9448 5.0600 -0.0007 8 9 2.9681 6.0618 -0.0006 9 9 4.7429 5.1868 1.1413 10 9 4.7421 5.1862 -1.1432 11 6 4.0584 2.5373 -0.0001 12 6 5.4698 2.6225 -0.0006 13 1 5.9580 3.4994 0.3983 14 6 6.2341 1.5708 -0.5181 15 7 5.6691 0.6573 -1.2650 16 14 8.0611 1.4708 -0.1421 17 1 8.4530 2.6165 0.7176 18 1 8.3520 0.1981 0.5657 19 1 8.8310 1.5185 -1.4111 20 6 3.4251 1.2816 -0.0005 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 0.2085 2.3151 -0.0005 25 1 1.3058 4.5157 -0.0115 26 1 6.1987 -0.0720 -1.6234 27 1 4.0146 0.3767 -0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238354371.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:16 Heat of formation + Delta-G solvation = -194.822653 kcal Electronic energy + Delta-G solvation = -18071.198527 eV Core-core repulsion = 14571.254834 eV Total energy + Delta-G solvation = -3499.943693 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.83830 -48.39212 -48.24614 -40.58069 -38.28592 -35.58128 -31.85550 -31.63219 -28.64298 -27.16304 -25.84430 -23.18785 -22.13558 -19.76068 -19.15049 -19.14522 -18.59476 -18.04120 -16.87502 -16.45458 -16.38464 -15.40804 -15.22416 -15.11078 -14.80169 -14.69260 -14.55964 -14.50162 -14.42334 -13.83807 -13.61187 -13.16134 -12.85218 -12.76985 -12.61797 -12.11665 -11.83163 -11.73502 -11.47589 -11.10217 -9.56123 -9.06555 -8.74051 -6.59537 0.68228 0.88220 1.37483 1.48110 1.53406 2.10194 2.16947 2.56652 2.67922 3.34286 3.38741 3.53315 3.93345 4.20775 4.47098 4.48380 4.49402 4.75661 4.87570 5.00919 5.17004 5.36461 5.61778 5.68964 5.89052 5.92688 6.27721 6.69805 6.72945 6.87763 8.18061 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.016420 B = 0.012410 C = 0.007526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.877074 B = 2255.662910 C = 3719.305978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.346 6.346 3 C 0.150 3.850 4 C -0.314 4.314 5 C -0.012 4.012 6 C -0.350 4.350 7 C 0.528 3.472 8 F -0.188 7.188 9 F -0.192 7.192 10 F -0.191 7.191 11 C 0.147 3.853 12 C -0.478 4.478 13 H 0.085 0.915 14 C 0.039 3.961 15 N -0.801 5.801 16 Si 0.982 3.018 17 H -0.258 1.258 18 H -0.258 1.258 19 H -0.261 1.261 20 C -0.227 4.227 21 H 0.058 0.942 22 H 0.118 0.882 23 H 0.061 0.939 24 H 0.141 0.859 25 H 0.135 0.865 26 H 0.295 0.705 27 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.592 1.091 1.576 4.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.260 6.260 3 C 0.105 3.895 4 C -0.333 4.333 5 C -0.030 4.030 6 C -0.352 4.352 7 C 0.474 3.526 8 F -0.169 7.169 9 F -0.174 7.174 10 F -0.172 7.172 11 C 0.143 3.857 12 C -0.505 4.505 13 H 0.103 0.897 14 C -0.180 4.180 15 N -0.425 5.425 16 Si 0.801 3.199 17 H -0.182 1.182 18 H -0.182 1.182 19 H -0.186 1.186 20 C -0.247 4.247 21 H 0.076 0.924 22 H 0.136 0.864 23 H 0.080 0.920 24 H 0.159 0.841 25 H 0.153 0.847 26 H 0.106 0.894 27 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.465 0.724 1.421 4.741 hybrid contribution 0.651 0.222 -0.047 0.689 sum -3.814 0.946 1.374 4.163 Atomic orbital electron populations 1.23231 0.77124 1.04889 1.01885 1.86003 1.23184 1.27800 1.88994 1.19136 0.92119 0.84203 0.94049 1.20799 0.99510 0.91024 1.21964 1.20492 0.92080 0.97876 0.92595 1.19845 0.95179 0.90695 1.29517 1.18088 0.75877 0.85719 0.72874 1.93048 1.62945 1.64541 1.96380 1.93091 1.75648 1.96584 1.52061 1.93119 1.75668 1.96574 1.51876 1.17188 0.93443 0.89631 0.85409 1.20061 0.91345 1.04070 1.35043 0.89713 1.26834 1.06306 0.93237 0.91586 1.69866 1.40695 1.10538 1.21397 0.85157 0.75346 0.79830 0.79543 1.18159 1.18209 1.18579 1.20510 0.90807 0.98202 1.15156 0.92360 0.86423 0.92019 0.84106 0.84705 0.89428 0.86817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 9.81 113.37 1.11 1.74 15 2 O -0.35 -14.14 10.49 -92.52 -0.97 -15.11 15 3 C 0.15 6.95 6.67 22.46 0.15 7.10 15 4 C -0.31 -12.86 9.05 22.56 0.20 -12.65 15 5 C -0.01 -0.52 9.41 22.20 0.21 -0.31 15 6 C -0.35 -16.93 5.42 -19.39 -0.11 -17.04 15 7 C 0.53 23.81 2.82 71.23 0.20 24.01 15 8 F -0.19 -7.44 15.97 44.97 0.72 -6.73 15 9 F -0.19 -8.71 15.68 44.97 0.71 -8.00 15 10 F -0.19 -8.96 16.48 44.97 0.74 -8.22 15 11 C 0.15 7.84 5.56 -21.30 -0.12 7.72 15 12 C -0.48 -25.40 7.83 23.46 0.18 -25.22 15 13 H 0.08 4.46 6.03 -2.91 -0.02 4.44 15 14 C 0.04 1.92 5.19 85.25 0.44 2.36 15 15 N -0.80 -40.96 10.86 21.82 0.24 -40.72 15 16 Si 0.98 37.65 29.59 68.60 2.03 39.68 15 17 H -0.26 -9.87 7.11 99.48 0.71 -9.17 15 18 H -0.26 -9.36 7.11 99.48 0.71 -8.65 15 19 H -0.26 -9.55 7.11 99.48 0.71 -8.84 15 20 C -0.23 -11.99 8.62 22.82 0.20 -11.79 15 21 H 0.06 1.47 7.65 -2.39 -0.02 1.46 15 22 H 0.12 2.43 8.14 -2.39 -0.02 2.41 15 23 H 0.06 1.51 7.65 -2.39 -0.02 1.49 15 24 H 0.14 4.64 6.27 -2.91 -0.02 4.62 15 25 H 0.14 4.85 7.14 -2.91 -0.02 4.83 15 26 H 0.29 13.45 8.30 -92.71 -0.77 12.68 15 27 H 0.11 6.37 6.12 -2.91 -0.02 6.35 15 Total: -1.00 -58.70 248.07 7.16 -51.54 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 1.22 Total: 11.64 kcal Atomic # 6 Polarization: -26.55 SS G_CDS: 2.47 Total: -24.08 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: 0.24 Total: -40.72 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -0.97 Total: -15.11 kcal Atomic # 9 Polarization: -25.11 SS G_CDS: 2.16 Total: -22.95 kcal Atomic # 14 Polarization: 37.65 SS G_CDS: 2.03 Total: 39.68 kcal Total: -58.70 7.16 -51.54 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238354371.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.280 kcal (2) G-P(sol) polarization free energy of solvation -58.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds