Wall clock time and date at job start Mon Mar 30 2020 06:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35902 * 116.99777 * 2 1 4 4 C 1.39161 * 119.93416 * 359.97438 * 3 2 1 5 5 C 1.38516 * 120.44579 * 180.02562 * 4 3 2 6 6 C 1.37672 * 120.30596 * 0.02562 * 5 4 3 7 7 C 1.40732 * 119.85549 * 359.97438 * 6 5 4 8 8 C 1.41397 * 120.21706 * 179.97438 * 7 6 5 9 9 H 1.07997 * 120.00195 * 150.48678 * 8 7 6 10 10 C 1.39933 * 120.00095 * 330.47881 * 8 7 6 11 11 N 1.30834 * 119.99980 * 348.44887 * 10 8 7 12 12 Si 1.86796 * 120.00286 * 168.44268 * 10 8 7 13 13 H 1.48503 * 109.47003 * 90.00179 * 12 10 8 14 14 H 1.48499 * 109.47357 * 210.00543 * 12 10 8 15 15 H 1.48505 * 109.46796 * 330.00457 * 12 10 8 16 16 C 1.38099 * 119.93302 * 180.02562 * 3 2 1 17 17 C 1.50697 * 120.15131 * 0.25589 * 16 3 2 18 18 F 1.39904 * 109.46959 * 263.50808 * 17 16 3 19 19 F 1.39901 * 109.47416 * 23.51285 * 17 16 3 20 20 F 1.39904 * 109.47029 * 143.51079 * 17 16 3 21 21 H 1.09000 * 109.46664 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.46885 * 299.99421 * 1 2 3 23 23 H 1.08998 * 109.47451 * 59.99943 * 1 2 3 24 24 H 1.08003 * 119.77459 * 0.04252 * 4 3 2 25 25 H 1.08004 * 119.84543 * 179.97438 * 5 4 3 26 26 H 1.07996 * 120.07078 * 179.97438 * 6 5 4 27 27 H 0.96993 * 119.99891 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2866 2.3771 -0.0005 5 6 1.9044 3.6169 -0.0011 6 6 3.2781 3.7086 -0.0016 7 6 4.0584 2.5375 -0.0011 8 6 5.4698 2.6228 -0.0022 9 1 6.0583 1.8433 0.4589 10 6 6.1042 3.7170 -0.6008 11 7 5.4184 4.5406 -1.3512 12 14 7.9301 4.0019 -0.3285 13 1 8.7037 3.2945 -1.3803 14 1 8.2194 5.4569 -0.3952 15 1 8.3186 3.4807 1.0067 16 6 3.4251 1.2816 -0.0005 17 6 4.2478 0.0190 -0.0069 18 9 4.6281 -0.2963 1.3019 19 9 3.4887 -1.0295 -0.5376 20 9 5.3904 0.2109 -0.7912 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 0.2084 2.3151 -0.0003 25 1 1.3056 4.5158 -0.0019 26 1 3.7557 4.6772 -0.0025 27 1 5.8580 5.2993 -1.7658 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238367007.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:14 Heat of formation + Delta-G solvation = -175.967775 kcal Electronic energy + Delta-G solvation = -18434.472776 eV Core-core repulsion = 14935.346691 eV Total energy + Delta-G solvation = -3499.126084 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.85291 -46.37962 -46.30243 -38.96716 -36.53632 -33.60122 -30.85081 -29.19939 -26.69473 -25.85065 -24.08417 -20.98826 -20.61758 -18.15127 -17.26206 -17.13012 -16.58321 -15.98319 -15.25114 -14.99125 -14.82091 -13.75751 -13.32456 -13.26395 -13.17312 -12.81718 -12.69317 -12.52144 -12.49206 -12.07696 -11.81946 -11.38157 -11.28054 -11.19827 -10.79372 -10.55338 -10.20024 -10.07703 -9.51232 -9.33109 -7.83464 -7.16996 -6.95512 -4.66778 2.45438 2.73649 3.00450 3.05427 3.11160 3.81253 4.07174 4.08044 4.42333 5.23660 5.26714 5.47339 5.55743 5.61497 5.82518 5.85223 6.04670 6.29619 6.65317 6.78017 6.98027 7.07751 7.42472 7.52138 7.77066 7.84797 8.19459 8.39647 8.60023 8.63697 9.97136 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.026985 B = 0.010362 C = 0.008004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.383066 B = 2701.424759 C = 3497.205468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.319 6.319 3 C 0.190 3.810 4 C -0.325 4.325 5 C -0.059 4.059 6 C -0.179 4.179 7 C 0.168 3.832 8 C -0.440 4.440 9 H 0.088 0.912 10 C 0.077 3.923 11 N -0.782 5.782 12 Si 0.916 3.084 13 H -0.265 1.265 14 H -0.274 1.274 15 H -0.257 1.257 16 C -0.329 4.329 17 C 0.525 3.475 18 F -0.200 7.200 19 F -0.189 7.189 20 F -0.178 7.178 21 H 0.087 0.913 22 H 0.048 0.952 23 H 0.049 0.951 24 H 0.103 0.897 25 H 0.098 0.902 26 H 0.126 0.874 27 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.425 -2.452 1.367 4.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.233 6.233 3 C 0.145 3.855 4 C -0.345 4.345 5 C -0.078 4.078 6 C -0.198 4.198 7 C 0.165 3.835 8 C -0.468 4.468 9 H 0.106 0.894 10 C -0.143 4.143 11 N -0.406 5.406 12 Si 0.740 3.260 13 H -0.190 1.190 14 H -0.199 1.199 15 H -0.181 1.181 16 C -0.333 4.333 17 C 0.471 3.529 18 F -0.182 7.182 19 F -0.170 7.170 20 F -0.159 7.159 21 H 0.105 0.895 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.121 0.879 25 H 0.116 0.884 26 H 0.144 0.856 27 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.283 -2.465 1.207 4.279 hybrid contribution 0.558 0.183 -0.046 0.589 sum -2.726 -2.282 1.161 3.740 Atomic orbital electron populations 1.22844 0.80069 1.02354 1.00858 1.86131 1.20143 1.28033 1.88948 1.18319 0.90449 0.83570 0.93134 1.20376 0.97531 0.92084 1.24511 1.20589 0.94971 0.95310 0.96895 1.21250 0.91889 0.98780 1.07874 1.17050 0.93361 0.88538 0.84597 1.19825 0.91276 1.05288 1.30393 0.89361 1.25971 1.01612 0.94102 0.92633 1.69796 1.38666 1.11550 1.20542 0.86152 0.81073 0.78284 0.80492 1.19021 1.19856 1.18074 1.19103 0.89633 0.92536 1.31982 1.18115 0.77935 0.84048 0.72763 1.93100 1.92168 1.94103 1.38809 1.93102 1.76090 1.61232 1.86620 1.93143 1.52667 1.95155 1.74949 0.89479 0.93337 0.93271 0.87877 0.88423 0.85604 0.90335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 9.81 101.05 0.99 1.52 15 2 O -0.32 -6.73 8.20 -19.43 -0.16 -6.89 15 3 C 0.19 4.45 6.58 -39.29 -0.26 4.19 15 4 C -0.33 -7.06 9.05 -39.14 -0.35 -7.42 15 5 C -0.06 -1.31 10.02 -39.69 -0.40 -1.71 15 6 C -0.18 -4.44 8.65 -38.85 -0.34 -4.77 15 7 C 0.17 4.41 5.51 -106.84 -0.59 3.82 15 8 C -0.44 -11.41 7.28 -37.75 -0.27 -11.69 15 9 H 0.09 2.28 6.57 -52.49 -0.35 1.93 15 10 C 0.08 1.86 5.23 -17.34 -0.09 1.77 15 11 N -0.78 -19.20 10.94 55.55 0.61 -18.59 15 12 Si 0.92 18.21 29.57 -169.99 -5.03 13.18 15 13 H -0.27 -5.26 7.11 56.52 0.40 -4.86 15 14 H -0.27 -5.21 7.11 56.52 0.40 -4.81 15 15 H -0.26 -5.09 7.11 56.52 0.40 -4.69 15 16 C -0.33 -8.36 5.51 -103.77 -0.57 -8.93 15 17 C 0.53 12.74 2.89 36.00 0.10 12.85 15 18 F -0.20 -4.72 17.30 2.25 0.04 -4.68 15 19 F -0.19 -4.39 15.03 2.25 0.03 -4.35 15 20 F -0.18 -4.38 14.53 2.25 0.03 -4.35 15 21 H 0.09 1.07 8.14 -51.93 -0.42 0.65 15 22 H 0.05 0.68 7.65 -51.93 -0.40 0.29 15 23 H 0.05 0.71 7.65 -51.93 -0.40 0.31 15 24 H 0.10 1.92 6.27 -52.48 -0.33 1.59 15 25 H 0.10 1.87 8.06 -52.48 -0.42 1.45 15 26 H 0.13 3.15 6.31 -52.49 -0.33 2.82 15 27 H 0.29 6.32 8.30 -40.82 -0.34 5.98 15 LS Contribution 246.37 15.07 3.71 3.71 Total: -1.00 -27.36 246.37 -4.32 -31.68 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -1.78 Total: 0.66 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -1.78 Total: -10.37 kcal Atomic # 7 Polarization: -19.20 SS G_CDS: 0.61 Total: -18.59 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: -0.16 Total: -6.89 kcal Atomic # 9 Polarization: -13.49 SS G_CDS: 0.11 Total: -13.39 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.18 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -27.36 -4.32 -31.68 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238367007.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.292 kcal (2) G-P(sol) polarization free energy of solvation -27.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds