Wall clock time and date at job start Mon Mar 30 2020 06:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35902 * 116.99777 * 2 1 4 4 C 1.39161 * 119.93416 * 359.97438 * 3 2 1 5 5 C 1.38516 * 120.44579 * 180.02562 * 4 3 2 6 6 C 1.37672 * 120.30596 * 0.02562 * 5 4 3 7 7 C 1.40732 * 119.85549 * 359.97438 * 6 5 4 8 8 C 1.41397 * 120.21706 * 179.97438 * 7 6 5 9 9 H 1.07997 * 120.00195 * 150.48678 * 8 7 6 10 10 C 1.39933 * 120.00095 * 330.47881 * 8 7 6 11 11 N 1.30834 * 119.99980 * 348.44887 * 10 8 7 12 12 Si 1.86796 * 120.00286 * 168.44268 * 10 8 7 13 13 H 1.48503 * 109.47003 * 90.00179 * 12 10 8 14 14 H 1.48499 * 109.47357 * 210.00543 * 12 10 8 15 15 H 1.48505 * 109.46796 * 330.00457 * 12 10 8 16 16 C 1.38099 * 119.93302 * 180.02562 * 3 2 1 17 17 C 1.50697 * 120.15131 * 0.25589 * 16 3 2 18 18 F 1.39904 * 109.46959 * 263.50808 * 17 16 3 19 19 F 1.39901 * 109.47416 * 23.51285 * 17 16 3 20 20 F 1.39904 * 109.47029 * 143.51079 * 17 16 3 21 21 H 1.09000 * 109.46664 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.46885 * 299.99421 * 1 2 3 23 23 H 1.08998 * 109.47451 * 59.99943 * 1 2 3 24 24 H 1.08003 * 119.77459 * 0.04252 * 4 3 2 25 25 H 1.08004 * 119.84543 * 179.97438 * 5 4 3 26 26 H 1.07996 * 120.07078 * 179.97438 * 6 5 4 27 27 H 0.96993 * 119.99891 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2866 2.3771 -0.0005 5 6 1.9044 3.6169 -0.0011 6 6 3.2781 3.7086 -0.0016 7 6 4.0584 2.5375 -0.0011 8 6 5.4698 2.6228 -0.0022 9 1 6.0583 1.8433 0.4589 10 6 6.1042 3.7170 -0.6008 11 7 5.4184 4.5406 -1.3512 12 14 7.9301 4.0019 -0.3285 13 1 8.7037 3.2945 -1.3803 14 1 8.2194 5.4569 -0.3952 15 1 8.3186 3.4807 1.0067 16 6 3.4251 1.2816 -0.0005 17 6 4.2478 0.0190 -0.0069 18 9 4.6281 -0.2963 1.3019 19 9 3.4887 -1.0295 -0.5376 20 9 5.3904 0.2109 -0.7912 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 0.2084 2.3151 -0.0003 25 1 1.3056 4.5158 -0.0019 26 1 3.7557 4.6772 -0.0025 27 1 5.8580 5.2993 -1.7658 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238367007.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:14 Heat of formation + Delta-G solvation = -190.799548 kcal Electronic energy + Delta-G solvation = -18435.115930 eV Core-core repulsion = 14935.346691 eV Total energy + Delta-G solvation = -3499.769238 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.75939 -48.26650 -48.22892 -40.63425 -38.25061 -35.39388 -32.65014 -30.95323 -28.08748 -27.66334 -25.92726 -22.74860 -22.43671 -19.90416 -19.16534 -19.02621 -18.41731 -17.72684 -16.93738 -16.47325 -16.43986 -15.50646 -15.21868 -15.04582 -14.90305 -14.72205 -14.52588 -14.42816 -14.24706 -13.76486 -13.49586 -13.03016 -12.86233 -12.84394 -12.43462 -12.17487 -11.92036 -11.69465 -11.28582 -11.08718 -9.66585 -8.94876 -8.74517 -6.56321 0.64299 0.95972 1.38531 1.48508 1.53192 2.16513 2.18776 2.56562 2.63196 3.36863 3.40890 3.59386 3.94634 4.28803 4.48257 4.50848 4.57931 4.77773 4.92675 4.95222 5.17689 5.26517 5.63093 5.76411 5.92936 6.02087 6.39917 6.61940 6.74293 6.83507 8.21149 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.026985 B = 0.010362 C = 0.008004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.383066 B = 2701.424759 C = 3497.205468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.336 6.336 3 C 0.185 3.815 4 C -0.319 4.319 5 C -0.053 4.053 6 C -0.206 4.206 7 C 0.143 3.857 8 C -0.472 4.472 9 H 0.077 0.923 10 C 0.042 3.958 11 N -0.807 5.807 12 Si 0.981 3.019 13 H -0.264 1.264 14 H -0.257 1.257 15 H -0.259 1.259 16 C -0.360 4.360 17 C 0.526 3.474 18 F -0.199 7.199 19 F -0.183 7.183 20 F -0.184 7.184 21 H 0.118 0.882 22 H 0.062 0.938 23 H 0.060 0.940 24 H 0.140 0.860 25 H 0.131 0.869 26 H 0.116 0.884 27 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.461 -2.252 1.397 5.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.250 6.250 3 C 0.139 3.861 4 C -0.338 4.338 5 C -0.071 4.071 6 C -0.225 4.225 7 C 0.140 3.860 8 C -0.500 4.500 9 H 0.095 0.905 10 C -0.176 4.176 11 N -0.431 5.431 12 Si 0.801 3.199 13 H -0.188 1.188 14 H -0.180 1.180 15 H -0.183 1.183 16 C -0.363 4.363 17 C 0.472 3.528 18 F -0.181 7.181 19 F -0.165 7.165 20 F -0.166 7.166 21 H 0.136 0.864 22 H 0.081 0.919 23 H 0.079 0.921 24 H 0.158 0.842 25 H 0.149 0.851 26 H 0.134 0.866 27 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.352 -2.272 1.236 5.063 hybrid contribution 0.685 0.038 -0.060 0.689 sum -3.666 -2.234 1.177 4.452 Atomic orbital electron populations 1.23263 0.76920 1.04973 1.02051 1.86104 1.23365 1.27005 1.88534 1.18486 0.90162 0.85039 0.92399 1.20791 0.99321 0.91167 1.22558 1.20973 0.94273 0.97045 0.94813 1.21259 0.93170 0.97975 1.10082 1.17378 0.93985 0.89476 0.85179 1.19934 0.91616 1.06348 1.32109 0.90526 1.26720 1.05693 0.93351 0.91840 1.69815 1.40454 1.12033 1.20822 0.85205 0.75674 0.78964 0.80048 1.18838 1.18036 1.18275 1.19385 0.91087 0.92549 1.33289 1.18083 0.77766 0.84170 0.72735 1.93090 1.92175 1.94097 1.38748 1.93099 1.75908 1.60920 1.86546 1.93121 1.53066 1.95232 1.75140 0.86391 0.91902 0.92131 0.84229 0.85085 0.86630 0.89383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 9.81 113.37 1.11 1.71 15 2 O -0.34 -13.51 8.20 -92.45 -0.76 -14.27 15 3 C 0.18 8.42 6.58 22.46 0.15 8.56 15 4 C -0.32 -13.04 9.05 22.56 0.20 -12.83 15 5 C -0.05 -2.25 10.02 22.20 0.22 -2.02 15 6 C -0.21 -10.25 8.65 22.75 0.20 -10.06 15 7 C 0.14 7.66 5.51 -21.30 -0.12 7.54 15 8 C -0.47 -25.15 7.28 23.46 0.17 -24.98 15 9 H 0.08 4.11 6.57 -2.91 -0.02 4.09 15 10 C 0.04 2.03 5.23 85.25 0.45 2.47 15 11 N -0.81 -39.98 10.94 21.82 0.24 -39.75 15 12 Si 0.98 37.39 29.57 68.60 2.03 39.41 15 13 H -0.26 -9.90 7.11 99.48 0.71 -9.19 15 14 H -0.26 -8.97 7.11 99.48 0.71 -8.27 15 15 H -0.26 -9.83 7.11 99.48 0.71 -9.12 15 16 C -0.36 -18.39 5.51 -19.31 -0.11 -18.50 15 17 C 0.53 25.82 2.89 71.23 0.21 26.02 15 18 F -0.20 -9.53 17.30 44.97 0.78 -8.75 15 19 F -0.18 -8.47 15.03 44.97 0.68 -7.79 15 20 F -0.18 -9.29 14.53 44.97 0.65 -8.64 15 21 H 0.12 2.45 8.14 -2.39 -0.02 2.43 15 22 H 0.06 1.53 7.65 -2.39 -0.02 1.51 15 23 H 0.06 1.51 7.65 -2.39 -0.02 1.49 15 24 H 0.14 4.60 6.27 -2.91 -0.02 4.58 15 25 H 0.13 4.62 8.06 -2.91 -0.02 4.60 15 26 H 0.12 5.89 6.31 -2.91 -0.02 5.87 15 27 H 0.30 13.03 8.30 -92.71 -0.77 12.26 15 Total: -1.00 -58.91 246.37 7.31 -51.60 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: 1.22 Total: 10.26 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: 2.48 Total: -22.08 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: 0.24 Total: -39.75 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -0.76 Total: -14.27 kcal Atomic # 9 Polarization: -27.29 SS G_CDS: 2.11 Total: -25.18 kcal Atomic # 14 Polarization: 37.39 SS G_CDS: 2.03 Total: 39.41 kcal Total: -58.91 7.31 -51.60 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238367007.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.202 kcal (2) G-P(sol) polarization free energy of solvation -58.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds