Wall clock time and date at job start Mon Mar 30 2020 06:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38572 * 119.78145 * 2 1 4 4 C 1.37622 * 120.30637 * 180.27818 * 3 2 1 5 5 C 1.40763 * 119.85665 * 359.72118 * 4 3 2 6 6 C 1.41399 * 120.21641 * 179.97438 * 5 4 3 7 7 H 1.08004 * 119.99840 * 155.00479 * 6 5 4 8 8 C 1.39932 * 120.00371 * 334.99674 * 6 5 4 9 9 N 1.30828 * 119.99725 * 342.56351 * 8 6 5 10 10 Si 1.86800 * 120.00260 * 162.56822 * 8 6 5 11 11 H 1.48497 * 109.47164 * 60.00184 * 10 8 6 12 12 H 1.48503 * 109.46853 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.46781 * 300.00013 * 10 8 6 14 14 C 1.40603 * 119.56668 * 0.02562 * 5 4 3 15 15 C 1.38138 * 119.69718 * 359.97438 * 14 5 4 16 16 O 1.35900 * 119.93889 * 180.02562 * 15 14 5 17 17 C 1.42908 * 116.99677 * 0.02562 * 16 15 14 18 18 F 1.39902 * 109.46624 * 60.00066 * 17 16 15 19 19 F 1.39894 * 109.46671 * 179.97438 * 17 16 15 20 20 F 1.39899 * 109.47037 * 299.99991 * 17 16 15 21 21 H 1.09003 * 109.47019 * 270.27407 * 1 2 3 22 22 H 1.09000 * 109.47198 * 30.27531 * 1 2 3 23 23 H 1.09003 * 109.47120 * 150.27483 * 1 2 3 24 24 H 1.08000 * 119.84307 * 359.97438 * 3 2 1 25 25 H 1.07996 * 120.06858 * 179.70695 * 4 3 2 26 26 H 0.97001 * 119.99991 * 179.97438 * 9 8 6 27 27 H 1.08007 * 120.15708 * 180.02562 * 14 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1952 1.2027 0.0000 4 6 3.5714 1.2153 -0.0058 5 6 4.2833 0.0010 -0.0058 6 6 5.6973 0.0051 -0.0122 7 1 6.2415 -0.8400 0.3828 8 6 6.3915 1.1040 -0.5305 9 7 5.7764 1.9599 -1.3056 10 14 8.1963 1.3488 -0.1159 11 1 8.9762 0.1766 -0.5882 12 1 8.6954 2.5777 -0.7838 13 1 8.3520 1.4871 1.3544 14 6 3.5792 -1.2160 -0.0004 15 6 2.1979 -1.2075 0.0054 16 8 1.5124 -2.3809 0.0111 17 6 2.2846 -3.5834 0.0114 18 9 3.0958 -3.6162 1.1508 19 9 1.4268 -4.6884 0.0182 20 9 3.0872 -3.6224 -1.1338 21 1 -0.3633 0.0049 1.0277 22 1 -0.3633 0.8875 -0.5181 23 1 -0.3633 -0.8925 -0.5096 24 1 1.6491 2.1345 -0.0004 25 1 4.1039 2.1549 -0.0105 26 1 6.2575 2.7218 -1.6646 27 1 4.1158 -2.1533 0.0001 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238463696.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:35 Heat of formation + Delta-G solvation = -204.438363 kcal Electronic energy + Delta-G solvation = -17955.491218 eV Core-core repulsion = 14455.130556 eV Total energy + Delta-G solvation = -3500.360662 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -51.38074 -49.11387 -48.96176 -40.83045 -38.39445 -35.70701 -33.07526 -30.76686 -29.21113 -27.05280 -25.52271 -23.26851 -22.34806 -20.68403 -20.08579 -19.76495 -18.79154 -17.35349 -16.69013 -16.27811 -16.11950 -15.77970 -15.74289 -15.44356 -15.35987 -15.11725 -15.10405 -14.72583 -14.15811 -14.06093 -13.81915 -13.37403 -13.17558 -12.81137 -12.64877 -12.23814 -12.01558 -11.80653 -11.42226 -11.00395 -9.46289 -9.06604 -8.71674 -6.44091 0.64172 0.83311 0.85853 1.38664 1.48852 1.52288 1.95267 2.18910 2.60317 2.92686 3.03612 3.57264 4.18893 4.30737 4.45447 4.67464 4.87827 4.98432 5.04844 5.06350 5.21916 5.36263 5.67600 5.79962 5.98034 6.00465 6.23375 6.56839 6.83251 6.87324 8.25575 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.026079 B = 0.008064 C = 0.006515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.411259 B = 3471.289258 C = 4296.796997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.218 4.218 3 C -0.074 4.074 4 C -0.192 4.192 5 C 0.103 3.897 6 C -0.495 4.495 7 H 0.075 0.925 8 C 0.040 3.960 9 N -0.815 5.815 10 Si 0.984 3.016 11 H -0.261 1.261 12 H -0.264 1.264 13 H -0.259 1.259 14 C -0.309 4.309 15 C 0.115 3.885 16 O -0.318 6.318 17 C 0.606 3.394 18 F -0.171 7.171 19 F -0.130 7.130 20 F -0.172 7.172 21 H 0.063 0.937 22 H 0.071 0.929 23 H 0.054 0.946 24 H 0.133 0.867 25 H 0.112 0.888 26 H 0.293 0.707 27 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.326 -4.019 1.771 6.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.219 4.219 3 C -0.092 4.092 4 C -0.211 4.211 5 C 0.101 3.899 6 C -0.523 4.523 7 H 0.093 0.907 8 C -0.177 4.177 9 N -0.439 5.439 10 Si 0.805 3.195 11 H -0.186 1.186 12 H -0.188 1.188 13 H -0.184 1.184 14 C -0.329 4.329 15 C 0.074 3.926 16 O -0.238 6.238 17 C 0.515 3.485 18 F -0.153 7.153 19 F -0.111 7.111 20 F -0.154 7.154 21 H 0.081 0.919 22 H 0.090 0.910 23 H 0.073 0.927 24 H 0.151 0.849 25 H 0.130 0.870 26 H 0.104 0.896 27 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.478 -3.869 1.610 6.133 hybrid contribution 1.143 -0.313 -0.019 1.185 sum -3.334 -4.181 1.591 5.580 Atomic orbital electron populations 1.20356 0.89444 1.02047 1.01642 1.19014 0.96824 0.88855 1.17239 1.20763 0.93725 0.96323 0.98412 1.21407 0.93565 0.98155 1.08016 1.17690 0.94029 0.90850 0.87362 1.19811 0.91714 1.03796 1.36997 0.90680 1.26752 1.05632 0.93699 0.91590 1.69839 1.40900 1.11543 1.21658 0.85217 0.75655 0.78892 0.79784 1.18578 1.18761 1.18356 1.21348 0.91718 0.99033 1.20819 1.18447 0.90277 0.82063 1.01801 1.86246 1.35543 1.12394 1.89627 1.19288 0.74871 0.79804 0.74535 1.93266 1.73803 1.96273 1.51958 1.93264 1.70865 1.50624 1.96350 1.93274 1.74306 1.96255 1.51603 0.91877 0.90971 0.92729 0.84888 0.86974 0.89629 0.87705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.57 9.78 71.23 0.70 -1.87 15 2 C -0.22 -9.26 5.92 -19.57 -0.12 -9.38 15 3 C -0.07 -3.25 9.66 22.20 0.21 -3.04 15 4 C -0.19 -9.76 8.69 22.74 0.20 -9.56 15 5 C 0.10 5.56 5.57 -21.31 -0.12 5.44 15 6 C -0.49 -26.45 9.05 23.46 0.21 -26.24 15 7 H 0.08 3.92 7.90 -2.91 -0.02 3.89 15 8 C 0.04 1.96 5.14 85.25 0.44 2.39 15 9 N -0.81 -41.02 10.97 21.82 0.24 -40.78 15 10 Si 0.98 37.05 29.59 68.60 2.03 39.08 15 11 H -0.26 -9.65 7.11 99.48 0.71 -8.95 15 12 H -0.26 -9.25 7.11 99.48 0.71 -8.54 15 13 H -0.26 -9.57 7.11 99.48 0.71 -8.86 15 14 C -0.31 -15.52 7.99 22.82 0.18 -15.34 15 15 C 0.12 5.26 6.45 22.46 0.14 5.40 15 16 O -0.32 -12.72 9.39 -92.43 -0.87 -13.59 15 17 C 0.61 21.85 3.42 113.37 0.39 22.23 15 18 F -0.17 -6.35 15.56 44.97 0.70 -5.65 15 19 F -0.13 -3.94 17.53 44.97 0.79 -3.15 15 20 F -0.17 -6.56 15.56 44.97 0.70 -5.86 15 21 H 0.06 1.88 8.14 -2.39 -0.02 1.86 15 22 H 0.07 2.05 8.08 -2.39 -0.02 2.03 15 23 H 0.05 1.75 7.51 -2.39 -0.02 1.73 15 24 H 0.13 4.91 8.06 -2.91 -0.02 4.88 15 25 H 0.11 5.85 6.18 -2.91 -0.02 5.83 15 26 H 0.29 13.22 8.30 -92.71 -0.77 12.45 15 27 H 0.11 5.14 5.08 -2.91 -0.01 5.13 15 Total: -1.00 -55.49 250.85 7.05 -48.44 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 1.22 Total: 11.45 kcal Atomic # 6 Polarization: -32.20 SS G_CDS: 2.24 Total: -29.96 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: 0.24 Total: -40.78 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: -0.87 Total: -13.59 kcal Atomic # 9 Polarization: -16.85 SS G_CDS: 2.19 Total: -14.66 kcal Atomic # 14 Polarization: 37.05 SS G_CDS: 2.03 Total: 39.08 kcal Total: -55.49 7.05 -48.44 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238463696.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.996 kcal (2) G-P(sol) polarization free energy of solvation -55.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds