Wall clock time and date at job start Mon Mar 30 2020 05:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 S 1.71004 * 125.45956 * 2 1 4 4 C 1.75987 * 90.63355 * 180.02562 * 3 2 1 5 5 C 1.39918 * 125.28841 * 180.02562 * 4 3 2 6 6 H 1.08000 * 119.99912 * 180.02562 * 5 4 3 7 7 C 1.40197 * 119.99846 * 0.02562 * 5 4 3 8 8 N 1.30715 * 120.00113 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 119.99574 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47145 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46966 * 120.00268 * 9 7 5 12 12 H 1.48499 * 109.47051 * 239.99897 * 9 7 5 13 13 N 1.31532 * 109.41826 * 359.76145 * 4 3 2 14 14 C 1.31280 * 115.82504 * 0.44193 * 13 4 3 15 15 C 1.48156 * 122.48140 * 179.80820 * 14 13 4 16 16 C 1.39469 * 119.73274 * 334.68269 * 15 14 13 17 17 C 1.38358 * 119.05780 * 179.70444 * 16 15 14 18 18 C 1.38816 * 118.52246 * 0.58179 * 17 16 15 19 19 C 1.38282 * 119.38292 * 359.43639 * 18 17 16 20 20 N 1.31743 * 120.90178 * 0.27560 * 19 18 17 21 21 H 1.08996 * 109.47102 * 269.96842 * 1 2 3 22 22 H 1.08996 * 109.47430 * 29.97375 * 1 2 3 23 23 H 1.09005 * 109.46962 * 149.97737 * 1 2 3 24 24 H 0.97001 * 119.99406 * 179.97438 * 8 7 5 25 25 H 1.07999 * 120.47063 * 0.02562 * 16 15 14 26 26 H 1.08006 * 120.73707 * 180.29452 * 17 16 15 27 27 H 1.08002 * 120.31198 * 179.71645 * 18 17 16 28 28 H 1.08003 * 119.54824 * 180.25485 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4990 1.3929 0.0000 4 6 3.9437 0.3878 -0.0008 5 6 5.2594 0.8638 -0.0006 6 1 6.0854 0.1679 -0.0016 7 6 5.5056 2.2439 0.0007 8 7 4.5060 3.0862 0.0024 9 14 7.2623 2.8793 0.0017 10 1 8.2040 1.7311 0.0014 11 1 7.4899 3.7072 -1.2100 12 1 7.4895 3.7048 1.2150 13 7 3.5942 -0.8802 0.0042 14 6 2.3031 -1.1176 -0.0006 15 6 1.7466 -2.4907 -0.0003 16 6 2.5035 -3.5439 -0.5131 17 6 1.9726 -4.8215 -0.5002 18 6 0.6961 -5.0038 0.0141 19 6 0.0009 -3.9143 0.5060 20 7 0.5316 -2.7086 0.4876 21 1 -0.3633 -0.0006 1.0276 22 1 -0.3634 0.8902 -0.5134 23 1 -0.3633 -0.8898 -0.5142 24 1 4.6764 4.0411 0.0037 25 1 3.4920 -3.3656 -0.9098 26 1 2.5369 -5.6577 -0.8860 27 1 0.2519 -5.9880 0.0340 28 1 -0.9907 -4.0537 0.9105 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238470714.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:27 Heat of formation + Delta-G solvation = 47.984171 kcal Electronic energy + Delta-G solvation = -14644.458308 eV Core-core repulsion = 12171.945872 eV Total energy + Delta-G solvation = -2472.512437 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.62981 -37.33481 -34.23579 -32.24217 -31.24391 -30.23309 -27.95277 -24.78766 -23.12984 -22.60390 -21.52157 -18.81286 -17.29947 -16.36917 -15.80521 -15.16816 -15.02543 -14.80708 -13.79634 -13.48085 -12.97091 -12.75591 -12.60583 -12.10195 -11.80592 -11.78999 -11.42642 -11.32799 -11.29679 -10.58466 -10.33968 -9.74095 -9.61690 -9.43163 -8.80534 -8.70564 -7.80887 -7.67240 -7.08898 -7.04727 -4.72728 1.40048 1.74120 2.51615 2.92660 3.00101 3.00612 3.40023 3.67229 3.89120 3.93257 4.48125 4.77436 5.14166 5.19672 5.33199 5.44431 5.65182 6.05337 6.20461 6.34394 6.46396 6.53738 6.60858 6.65417 6.81215 6.99458 7.05821 7.28761 7.52038 7.88203 8.28432 8.33568 8.55823 9.66098 9.79959 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.039146 B = 0.006485 C = 0.005627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.098317 B = 4316.648021 C = 4974.779775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 C -0.376 4.376 3 S 0.132 5.868 4 C 0.203 3.797 5 C -0.377 4.377 6 H 0.104 0.896 7 C 0.055 3.945 8 N -0.783 5.783 9 Si 0.942 3.058 10 H -0.256 1.256 11 H -0.269 1.269 12 H -0.269 1.269 13 N -0.587 5.587 14 C 0.120 3.880 15 C 0.224 3.776 16 C -0.147 4.147 17 C -0.084 4.084 18 C -0.197 4.197 19 C 0.093 3.907 20 N -0.475 5.475 21 H 0.047 0.953 22 H 0.035 0.965 23 H 0.056 0.944 24 H 0.298 0.702 25 H 0.139 0.861 26 H 0.127 0.873 27 H 0.125 0.875 28 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.837 -5.540 -0.822 6.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.504 4.504 3 S 0.393 5.607 4 C -0.052 4.052 5 C -0.419 4.419 6 H 0.122 0.878 7 C -0.166 4.166 8 N -0.413 5.413 9 Si 0.765 3.235 10 H -0.179 1.179 11 H -0.194 1.194 12 H -0.194 1.194 13 N -0.309 5.309 14 C -0.018 4.018 15 C 0.086 3.914 16 C -0.168 4.168 17 C -0.109 4.109 18 C -0.217 4.217 19 C -0.065 4.065 20 N -0.185 5.185 21 H 0.066 0.934 22 H 0.054 0.946 23 H 0.075 0.925 24 H 0.111 0.889 25 H 0.157 0.843 26 H 0.145 0.855 27 H 0.143 0.857 28 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.164 -3.862 -0.483 5.016 hybrid contribution 0.743 -1.384 -0.302 1.599 sum -2.422 -5.245 -0.785 5.831 Atomic orbital electron populations 1.19660 0.89613 0.99588 1.00075 1.25618 1.00940 0.99797 1.24004 1.84280 0.97724 1.06696 1.71981 1.23697 0.96790 0.88318 0.96363 1.18995 0.91153 0.91879 1.39903 0.87837 1.26159 1.01270 0.96457 0.92752 1.68737 1.33210 1.05256 1.34088 0.85669 0.79585 0.79421 0.78844 1.17936 1.19402 1.19411 1.67179 1.13495 1.17995 1.32217 1.18171 0.88963 0.89809 1.04870 1.19380 0.88483 0.92267 0.91268 1.22195 1.01621 0.92440 1.00591 1.21470 0.95182 0.97035 0.97254 1.22006 0.96387 1.00165 1.03186 1.22644 0.99493 0.87930 0.96474 1.67775 1.11955 1.23410 1.15332 0.93436 0.94581 0.92503 0.88879 0.84315 0.85460 0.85680 0.83393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.65 9.34 36.01 0.34 -0.31 15 2 C -0.38 -9.38 6.44 -34.68 -0.22 -9.61 15 3 S 0.13 3.38 20.09 -107.50 -2.16 1.22 15 4 C 0.20 5.54 7.11 -17.05 -0.12 5.42 15 5 C -0.38 -9.68 9.45 -38.22 -0.36 -10.04 15 6 H 0.10 2.57 7.85 -52.49 -0.41 2.16 15 7 C 0.06 1.29 5.50 -17.29 -0.10 1.19 15 8 N -0.78 -18.63 10.64 55.56 0.59 -18.04 15 9 Si 0.94 17.32 29.56 -169.99 -5.03 12.29 15 10 H -0.26 -4.67 7.11 56.52 0.40 -4.27 15 11 H -0.27 -4.83 7.11 56.52 0.40 -4.43 15 12 H -0.27 -4.85 7.11 56.52 0.40 -4.45 15 13 N -0.59 -15.98 10.27 -9.51 -0.10 -16.08 15 14 C 0.12 3.08 6.54 -84.40 -0.55 2.53 15 15 C 0.22 4.99 6.51 -82.95 -0.54 4.45 15 16 C -0.15 -2.86 9.66 -39.08 -0.38 -3.23 15 17 C -0.08 -1.28 10.16 -39.32 -0.40 -1.68 15 18 C -0.20 -2.76 10.11 -39.35 -0.40 -3.16 15 19 C 0.09 1.47 11.17 -17.57 -0.20 1.28 15 20 N -0.47 -9.62 7.80 -9.78 -0.08 -9.70 15 21 H 0.05 0.98 8.14 -51.93 -0.42 0.55 15 22 H 0.04 0.70 8.14 -51.93 -0.42 0.28 15 23 H 0.06 1.18 6.59 -51.93 -0.34 0.84 15 24 H 0.30 6.31 8.29 -40.82 -0.34 5.97 15 25 H 0.14 2.73 7.89 -52.49 -0.41 2.32 15 26 H 0.13 1.51 8.06 -52.48 -0.42 1.09 15 27 H 0.13 1.30 8.06 -52.49 -0.42 0.88 15 28 H 0.15 1.82 8.06 -52.48 -0.42 1.40 15 LS Contribution 262.75 15.07 3.96 3.96 Total: -1.00 -29.00 262.75 -8.15 -37.15 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -2.42 Total: 2.34 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: -2.93 Total: -13.15 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: 0.42 Total: -43.81 kcal Atomic # 14 Polarization: 17.32 SS G_CDS: -5.03 Total: 12.29 kcal Atomic # 16 Polarization: 3.38 SS G_CDS: -2.16 Total: 1.22 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.00 -8.15 -37.15 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238470714.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.139 kcal (2) G-P(sol) polarization free energy of solvation -29.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds