Wall clock time and date at job start Mon Mar 30 2020 05:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 S 1.71004 * 125.45956 * 2 1 4 4 C 1.75987 * 90.63355 * 180.02562 * 3 2 1 5 5 C 1.39918 * 125.28841 * 180.02562 * 4 3 2 6 6 H 1.08000 * 119.99912 * 180.02562 * 5 4 3 7 7 C 1.40197 * 119.99846 * 0.02562 * 5 4 3 8 8 N 1.30715 * 120.00113 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 119.99574 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47145 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46966 * 120.00268 * 9 7 5 12 12 H 1.48499 * 109.47051 * 239.99897 * 9 7 5 13 13 N 1.31532 * 109.41826 * 359.76145 * 4 3 2 14 14 C 1.31280 * 115.82504 * 0.44193 * 13 4 3 15 15 C 1.48156 * 122.48140 * 179.80820 * 14 13 4 16 16 C 1.39469 * 119.73274 * 334.68269 * 15 14 13 17 17 C 1.38358 * 119.05780 * 179.70444 * 16 15 14 18 18 C 1.38816 * 118.52246 * 0.58179 * 17 16 15 19 19 C 1.38282 * 119.38292 * 359.43639 * 18 17 16 20 20 N 1.31743 * 120.90178 * 0.27560 * 19 18 17 21 21 H 1.08996 * 109.47102 * 269.96842 * 1 2 3 22 22 H 1.08996 * 109.47430 * 29.97375 * 1 2 3 23 23 H 1.09005 * 109.46962 * 149.97737 * 1 2 3 24 24 H 0.97001 * 119.99406 * 179.97438 * 8 7 5 25 25 H 1.07999 * 120.47063 * 0.02562 * 16 15 14 26 26 H 1.08006 * 120.73707 * 180.29452 * 17 16 15 27 27 H 1.08002 * 120.31198 * 179.71645 * 18 17 16 28 28 H 1.08003 * 119.54824 * 180.25485 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4990 1.3929 0.0000 4 6 3.9437 0.3878 -0.0008 5 6 5.2594 0.8638 -0.0006 6 1 6.0854 0.1679 -0.0016 7 6 5.5056 2.2439 0.0007 8 7 4.5060 3.0862 0.0024 9 14 7.2623 2.8793 0.0017 10 1 8.2040 1.7311 0.0014 11 1 7.4899 3.7072 -1.2100 12 1 7.4895 3.7048 1.2150 13 7 3.5942 -0.8802 0.0042 14 6 2.3031 -1.1176 -0.0006 15 6 1.7466 -2.4907 -0.0003 16 6 2.5035 -3.5439 -0.5131 17 6 1.9726 -4.8215 -0.5002 18 6 0.6961 -5.0038 0.0141 19 6 0.0009 -3.9143 0.5060 20 7 0.5316 -2.7086 0.4876 21 1 -0.3633 -0.0006 1.0276 22 1 -0.3634 0.8902 -0.5134 23 1 -0.3633 -0.8898 -0.5142 24 1 4.6764 4.0411 0.0037 25 1 3.4920 -3.3656 -0.9098 26 1 2.5369 -5.6577 -0.8860 27 1 0.2519 -5.9880 0.0340 28 1 -0.9907 -4.0537 0.9105 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238470714.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:26 Heat of formation + Delta-G solvation = 30.322611 kcal Electronic energy + Delta-G solvation = -14645.224171 eV Core-core repulsion = 12171.945872 eV Total energy + Delta-G solvation = -2473.278299 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.05890 -39.14704 -36.07925 -33.70799 -32.80297 -31.77423 -29.80890 -26.48720 -24.67212 -24.07756 -23.24420 -20.49617 -19.23329 -17.96379 -17.23289 -16.75617 -16.67063 -16.25037 -15.41100 -15.09568 -14.43994 -14.37041 -13.97981 -13.88239 -13.55551 -13.54152 -13.11230 -12.86786 -12.67079 -12.31450 -11.97042 -11.42839 -11.40365 -10.76322 -10.27836 -10.19310 -9.78227 -9.61882 -8.90649 -8.87350 -6.67643 -0.04979 0.44512 0.73828 1.39900 1.45851 1.49875 1.59773 1.94774 2.17974 2.22367 2.94036 3.20680 3.42536 3.99824 4.07188 4.26649 4.30263 4.61742 4.67413 4.75525 4.90046 4.95626 4.97357 5.19850 5.25789 5.32995 5.40790 5.68107 5.88487 5.95053 6.40546 6.41070 7.14661 7.73235 8.02892 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.039146 B = 0.006485 C = 0.005627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.098317 B = 4316.648021 C = 4974.779775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 C -0.401 4.401 3 S 0.112 5.888 4 C 0.170 3.830 5 C -0.402 4.402 6 H 0.102 0.898 7 C 0.021 3.979 8 N -0.801 5.801 9 Si 1.020 2.980 10 H -0.255 1.255 11 H -0.256 1.256 12 H -0.258 1.258 13 N -0.615 5.615 14 C 0.106 3.894 15 C 0.179 3.821 16 C -0.165 4.165 17 C -0.075 4.075 18 C -0.169 4.169 19 C 0.084 3.916 20 N -0.499 5.499 21 H 0.050 0.950 22 H 0.046 0.954 23 H 0.060 0.940 24 H 0.312 0.688 25 H 0.120 0.880 26 H 0.167 0.833 27 H 0.178 0.822 28 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.057 -7.091 -0.814 7.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.529 4.529 3 S 0.372 5.628 4 C -0.083 4.083 5 C -0.445 4.445 6 H 0.120 0.880 7 C -0.199 4.199 8 N -0.430 5.430 9 Si 0.838 3.162 10 H -0.178 1.178 11 H -0.180 1.180 12 H -0.182 1.182 13 N -0.339 5.339 14 C -0.032 4.032 15 C 0.043 3.957 16 C -0.186 4.186 17 C -0.100 4.100 18 C -0.189 4.189 19 C -0.074 4.074 20 N -0.209 5.209 21 H 0.069 0.931 22 H 0.065 0.935 23 H 0.079 0.921 24 H 0.125 0.875 25 H 0.138 0.862 26 H 0.185 0.815 27 H 0.195 0.805 28 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -3.422 -5.416 -0.479 6.424 hybrid contribution 0.733 -1.052 -0.292 1.315 sum -2.689 -6.468 -0.770 7.047 Atomic orbital electron populations 1.19589 0.87428 1.00200 1.00385 1.25958 1.02486 0.99175 1.25237 1.83973 0.97850 1.07614 1.73408 1.24185 0.97975 0.88947 0.97221 1.19353 0.90683 0.93506 1.40955 0.88007 1.27204 1.05983 0.95493 0.91238 1.68772 1.35449 1.06269 1.32541 0.84562 0.73364 0.78755 0.79562 1.17843 1.18046 1.18185 1.67222 1.14809 1.18147 1.33683 1.18783 0.88617 0.92160 1.03595 1.19216 0.90259 0.91406 0.94863 1.22164 1.01023 0.93976 1.01477 1.21915 0.95989 0.96079 0.96055 1.22570 0.95099 1.01801 0.99409 1.23413 1.00991 0.87081 0.95900 1.67668 1.11257 1.26105 1.15877 0.93145 0.93527 0.92102 0.87462 0.86157 0.81507 0.80486 0.79604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.74 9.34 71.24 0.67 -0.08 15 2 C -0.40 -20.92 6.44 25.44 0.16 -20.76 15 3 S 0.11 5.98 20.09 -56.49 -1.13 4.85 15 4 C 0.17 9.78 7.11 85.14 0.61 10.39 15 5 C -0.40 -21.48 9.45 23.15 0.22 -21.26 15 6 H 0.10 5.28 7.85 -2.91 -0.02 5.25 15 7 C 0.02 0.96 5.50 85.34 0.47 1.43 15 8 N -0.80 -38.56 10.64 21.87 0.23 -38.32 15 9 Si 1.02 34.85 29.56 68.60 2.03 36.88 15 10 H -0.26 -8.62 7.11 99.48 0.71 -7.91 15 11 H -0.26 -8.23 7.11 99.48 0.71 -7.52 15 12 H -0.26 -8.32 7.11 99.48 0.71 -7.61 15 13 N -0.62 -35.47 10.27 -183.99 -1.89 -37.36 15 14 C 0.11 5.70 6.54 41.62 0.27 5.97 15 15 C 0.18 8.17 6.51 41.94 0.27 8.45 15 16 C -0.17 -6.44 9.66 22.60 0.22 -6.22 15 17 C -0.07 -2.05 10.16 22.44 0.23 -1.82 15 18 C -0.17 -3.93 10.11 22.42 0.23 -3.71 15 19 C 0.08 2.41 11.17 84.72 0.95 3.36 15 20 N -0.50 -19.90 7.80 -184.86 -1.44 -21.35 15 21 H 0.05 2.11 8.14 -2.39 -0.02 2.09 15 22 H 0.05 1.86 8.14 -2.39 -0.02 1.84 15 23 H 0.06 2.56 6.59 -2.38 -0.02 2.54 15 24 H 0.31 13.09 8.29 -92.71 -0.77 12.32 15 25 H 0.12 4.99 7.89 -2.91 -0.02 4.97 15 26 H 0.17 3.20 8.06 -2.91 -0.02 3.18 15 27 H 0.18 2.37 8.06 -2.91 -0.02 2.35 15 28 H 0.19 3.74 8.06 -2.91 -0.02 3.72 15 Total: -1.00 -67.61 262.75 3.26 -64.35 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 1.18 Total: 15.21 kcal Atomic # 6 Polarization: -28.54 SS G_CDS: 4.29 Total: -24.25 kcal Atomic # 7 Polarization: -93.94 SS G_CDS: -3.10 Total: -97.03 kcal Atomic # 14 Polarization: 34.85 SS G_CDS: 2.03 Total: 36.88 kcal Atomic # 16 Polarization: 5.98 SS G_CDS: -1.13 Total: 4.85 kcal Total: -67.61 3.26 -64.35 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238470714.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.669 kcal (2) G-P(sol) polarization free energy of solvation -67.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds