Wall clock time and date at job start Mon Mar 30 2020 05:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 S 1.71004 * 125.46058 * 2 1 4 4 C 1.75979 * 90.63153 * 179.97438 * 3 2 1 5 5 C 1.39877 * 125.29377 * 179.73679 * 4 3 2 6 6 H 1.08002 * 120.00000 * 171.84578 * 5 4 3 7 7 C 1.40180 * 119.99676 * 351.84802 * 5 4 3 8 8 N 1.30725 * 120.00117 * 351.93637 * 7 5 4 9 9 Si 1.86800 * 120.00010 * 171.94112 * 7 5 4 10 10 H 1.48500 * 109.47229 * 94.81221 * 9 7 5 11 11 H 1.48493 * 109.47341 * 214.81908 * 9 7 5 12 12 H 1.48506 * 109.47051 * 334.81537 * 9 7 5 13 13 N 1.31589 * 109.41489 * 359.97438 * 4 3 2 14 14 C 1.31239 * 115.81656 * 0.02562 * 13 4 3 15 15 C 1.48214 * 122.46952 * 179.97438 * 14 13 4 16 16 C 1.39888 * 120.54634 * 222.96242 * 15 14 13 17 17 C 1.38369 * 118.30345 * 180.02562 * 16 15 14 18 18 C 1.38354 * 119.29774 * 0.02562 * 17 16 15 19 19 N 1.31907 * 121.05044 * 0.02562 * 18 17 16 20 20 C 1.31726 * 121.86190 * 359.66468 * 19 18 17 21 21 H 1.09001 * 109.47307 * 354.95237 * 1 2 3 22 22 H 1.08998 * 109.46749 * 114.95039 * 1 2 3 23 23 H 1.09000 * 109.47192 * 234.94626 * 1 2 3 24 24 H 0.96999 * 120.00123 * 180.02562 * 8 7 5 25 25 H 1.08001 * 120.84890 * 0.02562 * 16 15 14 26 26 H 1.08002 * 120.35681 * 180.02562 * 17 16 15 27 27 H 1.07993 * 119.47573 * 180.02562 * 18 17 16 28 28 H 1.08002 * 119.70598 * 180.33399 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4991 1.3929 0.0000 4 6 3.9436 0.3878 0.0008 5 6 5.2591 0.8634 -0.0041 6 1 6.0820 0.1768 0.1295 7 6 5.5092 2.2311 -0.1823 8 7 4.5313 3.0384 -0.5003 9 14 7.2397 2.9002 0.0344 10 1 7.9154 2.9624 -1.2865 11 1 7.1738 4.2626 0.6215 12 1 8.0057 2.0073 0.9407 13 7 3.5939 -0.8808 0.0015 14 6 2.3031 -1.1177 0.0010 15 6 1.7462 -2.4913 0.0012 16 6 0.6625 -2.8192 -0.8203 17 6 0.1794 -4.1153 -0.7828 18 6 0.7775 -5.0367 0.0583 19 7 1.7979 -4.6982 0.8226 20 6 2.2964 -3.4790 0.8172 21 1 -0.3634 1.0237 0.0904 22 1 -0.3633 -0.4335 -0.9318 23 1 -0.3633 -0.5902 0.8413 24 1 4.7045 3.9847 -0.6240 25 1 0.2142 -2.0796 -1.4672 26 1 -0.6557 -4.4047 -1.4035 27 1 0.4031 -6.0492 0.0895 28 1 3.1362 -3.2412 1.4534 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238470742.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:29 Heat of formation + Delta-G solvation = 44.420230 kcal Electronic energy + Delta-G solvation = -14626.899444 eV Core-core repulsion = 12154.232463 eV Total energy + Delta-G solvation = -2472.666981 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.67137 -37.48617 -34.34753 -32.44087 -31.18434 -30.29560 -28.04874 -24.80453 -23.06992 -22.76788 -21.62298 -18.69890 -17.36492 -16.58547 -16.11310 -15.34233 -15.10104 -14.65397 -13.69390 -13.43987 -13.14128 -13.00897 -12.68589 -12.25775 -12.00319 -11.79368 -11.60794 -11.42458 -11.27799 -10.65568 -10.44974 -9.84113 -9.63659 -9.36733 -9.00992 -8.65686 -7.88911 -7.77584 -7.24216 -7.03986 -4.76985 1.42090 1.68622 2.42670 2.89784 2.93707 2.98985 3.34071 3.63148 3.84508 3.92387 4.36516 4.85236 5.00553 5.20708 5.37230 5.42129 5.53100 5.99705 6.13209 6.15626 6.21711 6.28356 6.48164 6.57986 6.69239 6.75441 7.07523 7.20600 7.42478 7.82949 8.23586 8.28526 8.39513 9.59919 9.73498 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.038720 B = 0.006406 C = 0.005645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.970114 B = 4370.040194 C = 4958.573353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 C -0.411 4.411 3 S 0.116 5.884 4 C 0.208 3.792 5 C -0.377 4.377 6 H 0.105 0.895 7 C 0.058 3.942 8 N -0.778 5.778 9 Si 0.939 3.061 10 H -0.265 1.265 11 H -0.271 1.271 12 H -0.255 1.255 13 N -0.586 5.586 14 C 0.132 3.868 15 C -0.029 4.029 16 C -0.073 4.073 17 C -0.176 4.176 18 C 0.075 3.925 19 N -0.489 5.489 20 C 0.116 3.884 21 H 0.047 0.953 22 H 0.045 0.955 23 H 0.044 0.956 24 H 0.298 0.702 25 H 0.134 0.866 26 H 0.129 0.871 27 H 0.148 0.852 28 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.552 -2.848 -0.474 5.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.537 4.537 3 S 0.377 5.623 4 C -0.046 4.046 5 C -0.420 4.420 6 H 0.122 0.878 7 C -0.164 4.164 8 N -0.407 5.407 9 Si 0.762 3.238 10 H -0.190 1.190 11 H -0.196 1.196 12 H -0.179 1.179 13 N -0.307 5.307 14 C -0.009 4.009 15 C -0.034 4.034 16 C -0.100 4.100 17 C -0.196 4.196 18 C -0.082 4.082 19 N -0.198 5.198 20 C -0.042 4.042 21 H 0.066 0.934 22 H 0.064 0.936 23 H 0.063 0.937 24 H 0.111 0.889 25 H 0.151 0.849 26 H 0.147 0.853 27 H 0.165 0.835 28 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -4.026 -2.484 0.030 4.731 hybrid contribution -0.155 0.154 -0.615 0.653 sum -4.182 -2.331 -0.585 4.823 Atomic orbital electron populations 1.19735 0.90281 1.00118 0.99576 1.25258 1.00152 0.99575 1.28704 1.84059 0.98169 1.07301 1.72739 1.23718 0.96720 0.88424 0.95692 1.18981 0.91335 0.92783 1.38853 0.87756 1.26183 1.01264 0.96645 0.92351 1.68941 1.33972 1.06758 1.30990 0.85740 0.79524 0.78659 0.79859 1.18989 1.19593 1.17872 1.67373 1.13603 1.17823 1.31922 1.18414 0.89118 0.90440 1.02882 1.19437 0.94739 0.93319 0.95895 1.21721 0.95081 0.96146 0.97011 1.21958 1.01913 0.94307 1.01463 1.22623 0.92994 0.99409 0.93191 1.67622 1.11121 1.19782 1.21257 1.22928 0.97735 0.87200 0.96362 0.93393 0.93626 0.93700 0.88909 0.84864 0.85343 0.83515 0.82596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.72 9.01 36.01 0.32 -0.40 15 2 C -0.41 -9.55 6.39 -34.68 -0.22 -9.78 15 3 S 0.12 2.86 20.25 -107.50 -2.18 0.68 15 4 C 0.21 5.55 7.07 -17.04 -0.12 5.43 15 5 C -0.38 -9.56 9.43 -38.24 -0.36 -9.92 15 6 H 0.10 2.56 7.86 -52.49 -0.41 2.15 15 7 C 0.06 1.34 5.47 -17.29 -0.09 1.24 15 8 N -0.78 -18.23 10.81 55.56 0.60 -17.63 15 9 Si 0.94 17.08 29.57 -169.99 -5.03 12.05 15 10 H -0.27 -4.75 7.11 56.52 0.40 -4.35 15 11 H -0.27 -4.77 7.11 56.52 0.40 -4.37 15 12 H -0.26 -4.62 7.11 56.52 0.40 -4.22 15 13 N -0.59 -15.61 10.61 -9.50 -0.10 -15.71 15 14 C 0.13 3.19 6.31 -84.39 -0.53 2.66 15 15 C -0.03 -0.61 5.60 -104.74 -0.59 -1.20 15 16 C -0.07 -1.27 8.84 -38.92 -0.34 -1.62 15 17 C -0.18 -2.57 10.10 -39.49 -0.40 -2.97 15 18 C 0.08 1.14 11.17 -17.48 -0.20 0.95 15 19 N -0.49 -8.96 10.35 -12.93 -0.13 -9.10 15 20 C 0.12 2.32 10.89 -17.15 -0.19 2.14 15 21 H 0.05 0.85 8.14 -51.93 -0.42 0.42 15 22 H 0.05 0.77 6.30 -51.93 -0.33 0.45 15 23 H 0.04 0.81 8.14 -51.93 -0.42 0.38 15 24 H 0.30 6.22 8.29 -40.82 -0.34 5.88 15 25 H 0.13 2.20 6.07 -52.49 -0.32 1.88 15 26 H 0.13 1.40 8.06 -52.49 -0.42 0.98 15 27 H 0.15 1.69 8.06 -52.49 -0.42 1.27 15 28 H 0.16 3.17 8.06 -52.49 -0.42 2.75 15 LS Contribution 262.17 15.07 3.95 3.95 Total: -1.00 -28.08 262.17 -7.91 -35.99 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -2.31 Total: 3.22 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: -2.72 Total: -13.46 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: 0.37 Total: -42.44 kcal Atomic # 14 Polarization: 17.08 SS G_CDS: -5.03 Total: 12.05 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -2.18 Total: 0.68 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -28.08 -7.91 -35.99 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238470742.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.412 kcal (2) G-P(sol) polarization free energy of solvation -28.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds