Wall clock time and date at job start Mon Mar 30 2020 05:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 S 1.71004 * 125.46058 * 2 1 4 4 C 1.75979 * 90.63153 * 179.97438 * 3 2 1 5 5 C 1.39877 * 125.29377 * 179.73679 * 4 3 2 6 6 H 1.08002 * 120.00000 * 171.84578 * 5 4 3 7 7 C 1.40180 * 119.99676 * 351.84802 * 5 4 3 8 8 N 1.30725 * 120.00117 * 351.93637 * 7 5 4 9 9 Si 1.86800 * 120.00010 * 171.94112 * 7 5 4 10 10 H 1.48500 * 109.47229 * 94.81221 * 9 7 5 11 11 H 1.48493 * 109.47341 * 214.81908 * 9 7 5 12 12 H 1.48506 * 109.47051 * 334.81537 * 9 7 5 13 13 N 1.31589 * 109.41489 * 359.97438 * 4 3 2 14 14 C 1.31239 * 115.81656 * 0.02562 * 13 4 3 15 15 C 1.48214 * 122.46952 * 179.97438 * 14 13 4 16 16 C 1.39888 * 120.54634 * 222.96242 * 15 14 13 17 17 C 1.38369 * 118.30345 * 180.02562 * 16 15 14 18 18 C 1.38354 * 119.29774 * 0.02562 * 17 16 15 19 19 N 1.31907 * 121.05044 * 0.02562 * 18 17 16 20 20 C 1.31726 * 121.86190 * 359.66468 * 19 18 17 21 21 H 1.09001 * 109.47307 * 354.95237 * 1 2 3 22 22 H 1.08998 * 109.46749 * 114.95039 * 1 2 3 23 23 H 1.09000 * 109.47192 * 234.94626 * 1 2 3 24 24 H 0.96999 * 120.00123 * 180.02562 * 8 7 5 25 25 H 1.08001 * 120.84890 * 0.02562 * 16 15 14 26 26 H 1.08002 * 120.35681 * 180.02562 * 17 16 15 27 27 H 1.07993 * 119.47573 * 180.02562 * 18 17 16 28 28 H 1.08002 * 119.70598 * 180.33399 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4991 1.3929 0.0000 4 6 3.9436 0.3878 0.0008 5 6 5.2591 0.8634 -0.0041 6 1 6.0820 0.1768 0.1295 7 6 5.5092 2.2311 -0.1823 8 7 4.5313 3.0384 -0.5003 9 14 7.2397 2.9002 0.0344 10 1 7.9154 2.9624 -1.2865 11 1 7.1738 4.2626 0.6215 12 1 8.0057 2.0073 0.9407 13 7 3.5939 -0.8808 0.0015 14 6 2.3031 -1.1177 0.0010 15 6 1.7462 -2.4913 0.0012 16 6 0.6625 -2.8192 -0.8203 17 6 0.1794 -4.1153 -0.7828 18 6 0.7775 -5.0367 0.0583 19 7 1.7979 -4.6982 0.8226 20 6 2.2964 -3.4790 0.8172 21 1 -0.3634 1.0237 0.0904 22 1 -0.3633 -0.4335 -0.9318 23 1 -0.3633 -0.5902 0.8413 24 1 4.7045 3.9847 -0.6240 25 1 0.2142 -2.0796 -1.4672 26 1 -0.6557 -4.4047 -1.4035 27 1 0.4031 -6.0492 0.0895 28 1 3.1362 -3.2412 1.4534 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238470742.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:29 Heat of formation + Delta-G solvation = 27.294879 kcal Electronic energy + Delta-G solvation = -14627.642055 eV Core-core repulsion = 12154.232463 eV Total energy + Delta-G solvation = -2473.409592 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.09244 -39.24691 -36.13463 -33.98735 -32.61081 -31.80104 -29.84636 -26.45144 -24.57620 -24.23301 -23.32170 -20.37796 -19.22998 -18.00336 -17.73182 -16.83693 -16.74703 -16.16629 -15.18752 -15.02614 -14.58880 -14.47285 -14.18895 -13.98369 -13.65227 -13.41535 -13.16745 -12.88569 -12.75159 -12.36227 -12.01322 -11.52830 -11.29827 -10.78011 -10.43740 -10.10649 -9.79971 -9.65610 -9.02198 -8.83597 -6.66237 -0.00762 0.33560 0.68329 1.38521 1.43317 1.49832 1.57339 1.93442 2.16409 2.23474 2.90765 3.16913 3.54041 3.83067 4.00725 4.08374 4.25346 4.59382 4.59624 4.68969 4.81302 4.83613 4.95760 5.09314 5.13694 5.21919 5.49485 5.67401 5.81814 5.92261 6.38939 6.41495 7.03174 7.73727 8.00698 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.038720 B = 0.006406 C = 0.005645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.970114 B = 4370.040194 C = 4958.573353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 C -0.418 4.418 3 S 0.097 5.903 4 C 0.174 3.826 5 C -0.407 4.407 6 H 0.099 0.901 7 C 0.025 3.975 8 N -0.798 5.798 9 Si 1.015 2.985 10 H -0.256 1.256 11 H -0.256 1.256 12 H -0.257 1.257 13 N -0.621 5.621 14 C 0.115 3.885 15 C -0.062 4.062 16 C -0.074 4.074 17 C -0.156 4.156 18 C 0.082 3.918 19 N -0.505 5.505 20 C 0.098 3.902 21 H 0.056 0.944 22 H 0.067 0.933 23 H 0.053 0.947 24 H 0.311 0.689 25 H 0.143 0.857 26 H 0.179 0.821 27 H 0.193 0.807 28 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.800 -3.550 -1.243 6.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.544 4.544 3 S 0.357 5.643 4 C -0.078 4.078 5 C -0.450 4.450 6 H 0.117 0.883 7 C -0.196 4.196 8 N -0.426 5.426 9 Si 0.832 3.168 10 H -0.181 1.181 11 H -0.180 1.180 12 H -0.180 1.180 13 N -0.343 5.343 14 C -0.023 4.023 15 C -0.066 4.066 16 C -0.101 4.101 17 C -0.175 4.175 18 C -0.076 4.076 19 N -0.214 5.214 20 C -0.058 4.058 21 H 0.075 0.925 22 H 0.086 0.914 23 H 0.072 0.928 24 H 0.124 0.876 25 H 0.161 0.839 26 H 0.196 0.804 27 H 0.210 0.790 28 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.310 -3.194 -0.738 6.240 hybrid contribution 0.126 0.252 -0.415 0.502 sum -5.184 -2.942 -1.153 6.071 Atomic orbital electron populations 1.19788 0.87197 1.01091 1.01038 1.25708 1.02187 0.98405 1.28100 1.83807 0.98252 1.08435 1.73792 1.24158 0.97965 0.89074 0.96631 1.19300 0.90984 0.94382 1.40352 0.88297 1.27143 1.05623 0.95732 0.91054 1.68970 1.35961 1.07633 1.30008 0.84673 0.73818 0.78250 0.80036 1.18062 1.17962 1.18017 1.67403 1.15421 1.18080 1.33384 1.18929 0.88549 0.92567 1.02282 1.19435 0.96881 0.91956 0.98364 1.21926 0.93933 0.97958 0.96268 1.22441 1.02092 0.92364 1.00594 1.23461 0.91223 1.01478 0.91397 1.67643 1.12567 1.18614 1.22543 1.22630 0.98017 0.88200 0.97002 0.92535 0.91419 0.92816 0.87594 0.83918 0.80389 0.79034 0.84804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.18 9.01 71.24 0.64 -0.54 15 2 C -0.42 -19.79 6.39 25.45 0.16 -19.62 15 3 S 0.10 4.92 20.25 -56.49 -1.14 3.78 15 4 C 0.17 9.79 7.07 85.13 0.60 10.39 15 5 C -0.41 -21.58 9.43 23.14 0.22 -21.36 15 6 H 0.10 5.14 7.86 -2.91 -0.02 5.11 15 7 C 0.03 1.16 5.47 85.33 0.47 1.63 15 8 N -0.80 -37.75 10.81 21.87 0.24 -37.51 15 9 Si 1.01 34.66 29.57 68.60 2.03 36.69 15 10 H -0.26 -8.38 7.11 99.48 0.71 -7.68 15 11 H -0.26 -8.07 7.11 99.48 0.71 -7.36 15 12 H -0.26 -8.75 7.11 99.48 0.71 -8.04 15 13 N -0.62 -34.83 10.61 -183.96 -1.95 -36.78 15 14 C 0.12 5.78 6.31 41.65 0.26 6.04 15 15 C -0.06 -2.60 5.60 -19.94 -0.11 -2.71 15 16 C -0.07 -2.43 8.84 22.70 0.20 -2.23 15 17 C -0.16 -3.84 10.10 22.33 0.23 -3.62 15 18 C 0.08 2.18 11.17 84.71 0.95 3.12 15 19 N -0.50 -17.89 10.35 -194.82 -2.02 -19.91 15 20 C 0.10 4.05 10.89 85.00 0.93 4.97 15 21 H 0.06 1.93 8.14 -2.39 -0.02 1.91 15 22 H 0.07 2.15 6.30 -2.39 -0.02 2.14 15 23 H 0.05 1.86 8.14 -2.39 -0.02 1.84 15 24 H 0.31 12.87 8.29 -92.71 -0.77 12.10 15 25 H 0.14 4.33 6.07 -2.91 -0.02 4.32 15 26 H 0.18 2.68 8.06 -2.91 -0.02 2.66 15 27 H 0.19 3.33 8.06 -2.91 -0.02 3.30 15 28 H 0.13 5.88 8.06 -2.91 -0.02 5.86 15 Total: -1.00 -64.39 262.17 2.88 -61.51 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 1.19 Total: 16.15 kcal Atomic # 6 Polarization: -28.47 SS G_CDS: 4.54 Total: -23.93 kcal Atomic # 7 Polarization: -90.47 SS G_CDS: -3.73 Total: -94.20 kcal Atomic # 14 Polarization: 34.66 SS G_CDS: 2.03 Total: 36.69 kcal Atomic # 16 Polarization: 4.92 SS G_CDS: -1.14 Total: 3.78 kcal Total: -64.39 2.88 -61.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238470742.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.803 kcal (2) G-P(sol) polarization free energy of solvation -64.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds