Wall clock time and date at job start Mon Mar 30 2020 05:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 S 1.70997 * 125.45965 * 2 1 4 4 C 1.75990 * 90.63183 * 179.97438 * 3 2 1 5 5 C 1.39912 * 125.29269 * 179.97438 * 4 3 2 6 6 H 1.07998 * 119.99669 * 180.02562 * 5 4 3 7 7 C 1.40204 * 119.99770 * 359.75406 * 5 4 3 8 8 N 1.30712 * 120.00102 * 0.27441 * 7 5 4 9 9 Si 1.86800 * 119.99693 * 180.27460 * 7 5 4 10 10 H 1.48508 * 109.47076 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47366 * 119.99687 * 9 7 5 12 12 H 1.48503 * 109.47044 * 239.99871 * 9 7 5 13 13 N 1.31537 * 109.41220 * 0.23309 * 4 3 2 14 14 C 1.31261 * 115.82768 * 359.57458 * 13 4 3 15 15 C 1.48188 * 122.47936 * 180.18273 * 14 13 4 16 16 C 1.39895 * 120.91339 * 42.91175 * 15 14 13 17 17 C 1.37938 * 119.00543 * 179.74982 * 16 15 14 18 18 N 1.31944 * 120.89246 * 0.54153 * 17 16 15 19 19 C 1.31949 * 122.03208 * 359.73276 * 18 17 16 20 20 C 1.37929 * 120.89469 * 359.97438 * 19 18 17 21 21 H 1.09002 * 109.46941 * 354.74450 * 1 2 3 22 22 H 1.08999 * 109.47322 * 114.74999 * 1 2 3 23 23 H 1.08998 * 109.46612 * 234.74968 * 1 2 3 24 24 H 0.97005 * 119.99523 * 180.02562 * 8 7 5 25 25 H 1.07997 * 120.49502 * 0.02860 * 16 15 14 26 26 H 1.08004 * 119.54923 * 180.29612 * 17 16 15 27 27 H 1.08001 * 119.55239 * 179.97438 * 19 18 17 28 28 H 1.07996 * 120.49791 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 16 2.4991 1.3928 0.0000 4 6 3.9437 0.3877 0.0008 5 6 5.2595 0.8635 0.0006 6 1 6.0853 0.1675 0.0007 7 6 5.5058 2.2437 -0.0054 8 7 4.5062 3.0860 -0.0055 9 14 7.2625 2.8788 -0.0134 10 1 8.2041 1.7304 -0.0113 11 1 7.4862 3.7008 -1.2298 12 1 7.4937 3.7101 1.1952 13 7 3.5941 -0.8803 -0.0041 14 6 2.3031 -1.1176 0.0005 15 6 1.7464 -2.4909 0.0000 16 6 2.2942 -3.4888 0.8132 17 6 1.7417 -4.7524 0.7855 18 7 0.7187 -5.0273 -0.0010 19 6 0.1759 -4.1172 -0.7872 20 6 0.6622 -2.8268 -0.8178 21 1 -0.3633 1.0234 0.0941 22 1 -0.3634 -0.4302 -0.9332 23 1 -0.3632 -0.5931 0.8392 24 1 4.6768 4.0409 -0.0101 25 1 3.1343 -3.2718 1.4563 26 1 2.1547 -5.5281 1.4133 27 1 -0.6604 -4.3862 -1.4154 28 1 0.2134 -2.0871 -1.4640 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238470795.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:31 Heat of formation + Delta-G solvation = 43.441607 kcal Electronic energy + Delta-G solvation = -14620.600881 eV Core-core repulsion = 12147.891464 eV Total energy + Delta-G solvation = -2472.709417 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.65014 -37.53118 -34.39396 -32.36314 -31.05170 -30.31428 -28.13449 -24.95392 -23.00145 -22.76497 -21.65430 -18.84949 -17.40155 -16.24316 -15.78393 -15.28846 -15.13274 -15.04770 -13.72972 -13.56207 -13.24145 -12.88843 -12.66650 -12.27181 -12.03332 -11.80389 -11.71360 -11.46957 -11.05503 -10.66837 -10.43998 -9.86279 -9.65088 -9.17729 -9.01196 -8.73966 -7.88473 -7.80442 -7.19725 -7.17051 -4.82111 1.53798 1.58923 2.42893 2.87861 2.94155 2.95957 3.32962 3.60996 3.84505 3.91094 4.35598 4.80372 4.98374 5.23306 5.34008 5.59184 5.64116 6.02838 6.11134 6.15443 6.22897 6.34556 6.36471 6.64954 6.73135 6.78386 7.06746 7.20560 7.41190 7.80133 8.21208 8.26698 8.34594 9.57448 9.70858 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.038816 B = 0.006370 C = 0.005615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.182974 B = 4394.296610 C = 4985.479644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 C -0.412 4.412 3 S 0.134 5.866 4 C 0.201 3.799 5 C -0.372 4.372 6 H 0.105 0.895 7 C 0.055 3.945 8 N -0.781 5.781 9 Si 0.942 3.058 10 H -0.255 1.255 11 H -0.268 1.268 12 H -0.268 1.268 13 N -0.585 5.585 14 C 0.122 3.878 15 C 0.062 3.938 16 C -0.152 4.152 17 C 0.088 3.912 18 N -0.502 5.502 19 C 0.089 3.911 20 C -0.166 4.166 21 H 0.047 0.953 22 H 0.046 0.954 23 H 0.044 0.956 24 H 0.299 0.701 25 H 0.134 0.866 26 H 0.150 0.850 27 H 0.150 0.850 28 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.935 -2.292 0.052 3.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.539 4.539 3 S 0.395 5.605 4 C -0.053 4.053 5 C -0.415 4.415 6 H 0.122 0.878 7 C -0.168 4.168 8 N -0.410 5.410 9 Si 0.765 3.235 10 H -0.179 1.179 11 H -0.193 1.193 12 H -0.193 1.193 13 N -0.306 5.306 14 C -0.017 4.017 15 C 0.051 3.949 16 C -0.173 4.173 17 C -0.068 4.068 18 N -0.212 5.212 19 C -0.068 4.068 20 C -0.187 4.187 21 H 0.066 0.934 22 H 0.065 0.935 23 H 0.063 0.937 24 H 0.112 0.888 25 H 0.152 0.848 26 H 0.167 0.833 27 H 0.167 0.833 28 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.116 -2.144 0.047 3.783 hybrid contribution 0.659 0.399 -0.004 0.771 sum -2.456 -1.745 0.043 3.014 Atomic orbital electron populations 1.19744 0.90207 1.00125 0.99701 1.25441 1.00383 1.00115 1.27967 1.84246 0.97566 1.06505 1.72205 1.23747 0.96839 0.88512 0.96197 1.19053 0.91255 0.91933 1.39239 0.87752 1.26187 1.01431 0.96437 0.92706 1.68727 1.33322 1.05354 1.33585 0.85651 0.79398 0.79479 0.78932 1.17857 1.19320 1.19319 1.67322 1.13584 1.17893 1.31810 1.18473 0.89201 0.90542 1.03533 1.18823 0.92001 0.91934 0.92130 1.22267 1.01069 0.93506 1.00470 1.22550 0.92590 0.95307 0.96314 1.67554 1.10702 1.36355 1.06590 1.22497 0.98604 0.89244 0.96406 1.22260 0.97986 0.97910 1.00572 0.93390 0.93489 0.93675 0.88762 0.84791 0.83277 0.83314 0.84862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.74 9.01 36.01 0.32 -0.41 15 2 C -0.41 -9.59 6.40 -34.68 -0.22 -9.81 15 3 S 0.13 3.28 20.09 -107.50 -2.16 1.12 15 4 C 0.20 5.34 7.11 -17.05 -0.12 5.22 15 5 C -0.37 -9.39 9.45 -38.22 -0.36 -9.75 15 6 H 0.10 2.56 7.85 -52.49 -0.41 2.15 15 7 C 0.05 1.24 5.50 -17.29 -0.10 1.15 15 8 N -0.78 -18.11 10.64 55.56 0.59 -17.52 15 9 Si 0.94 16.96 29.56 -169.99 -5.03 11.93 15 10 H -0.26 -4.58 7.11 56.52 0.40 -4.17 15 11 H -0.27 -4.73 7.11 56.52 0.40 -4.33 15 12 H -0.27 -4.72 7.11 56.52 0.40 -4.32 15 13 N -0.59 -15.55 10.62 -9.50 -0.10 -15.65 15 14 C 0.12 2.96 6.33 -84.40 -0.53 2.43 15 15 C 0.06 1.28 5.61 -104.57 -0.59 0.70 15 16 C -0.15 -2.88 9.84 -39.07 -0.38 -3.26 15 17 C 0.09 1.46 11.17 -17.61 -0.20 1.26 15 18 N -0.50 -8.53 10.35 -13.35 -0.14 -8.67 15 19 C 0.09 1.42 11.17 -17.61 -0.20 1.22 15 20 C -0.17 -2.96 8.82 -39.07 -0.34 -3.31 15 21 H 0.05 0.85 8.14 -51.93 -0.42 0.42 15 22 H 0.05 0.80 6.33 -51.93 -0.33 0.47 15 23 H 0.04 0.82 8.14 -51.93 -0.42 0.39 15 24 H 0.30 6.17 8.29 -40.82 -0.34 5.83 15 25 H 0.13 2.53 8.06 -52.49 -0.42 2.11 15 26 H 0.15 1.95 8.06 -52.48 -0.42 1.53 15 27 H 0.15 1.84 8.06 -52.49 -0.42 1.42 15 28 H 0.13 2.22 6.09 -52.49 -0.32 1.90 15 LS Contribution 261.99 15.07 3.95 3.95 Total: -1.00 -28.10 261.99 -7.91 -36.01 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -2.31 Total: 3.40 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -2.72 Total: -14.57 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: 0.35 Total: -41.84 kcal Atomic # 14 Polarization: 16.96 SS G_CDS: -5.03 Total: 11.93 kcal Atomic # 16 Polarization: 3.28 SS G_CDS: -2.16 Total: 1.12 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -28.10 -7.91 -36.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238470795.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.449 kcal (2) G-P(sol) polarization free energy of solvation -28.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds