Wall clock time and date at job start Mon Mar 30 2020 05:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 S 1.70997 * 125.45965 * 2 1 4 4 C 1.75990 * 90.63183 * 179.97438 * 3 2 1 5 5 C 1.39912 * 125.29269 * 179.97438 * 4 3 2 6 6 H 1.07998 * 119.99669 * 180.02562 * 5 4 3 7 7 C 1.40204 * 119.99770 * 359.75406 * 5 4 3 8 8 N 1.30712 * 120.00102 * 0.27441 * 7 5 4 9 9 Si 1.86800 * 119.99693 * 180.27460 * 7 5 4 10 10 H 1.48508 * 109.47076 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47366 * 119.99687 * 9 7 5 12 12 H 1.48503 * 109.47044 * 239.99871 * 9 7 5 13 13 N 1.31537 * 109.41220 * 0.23309 * 4 3 2 14 14 C 1.31261 * 115.82768 * 359.57458 * 13 4 3 15 15 C 1.48188 * 122.47936 * 180.18273 * 14 13 4 16 16 C 1.39895 * 120.91339 * 42.91175 * 15 14 13 17 17 C 1.37938 * 119.00543 * 179.74982 * 16 15 14 18 18 N 1.31944 * 120.89246 * 0.54153 * 17 16 15 19 19 C 1.31949 * 122.03208 * 359.73276 * 18 17 16 20 20 C 1.37929 * 120.89469 * 359.97438 * 19 18 17 21 21 H 1.09002 * 109.46941 * 354.74450 * 1 2 3 22 22 H 1.08999 * 109.47322 * 114.74999 * 1 2 3 23 23 H 1.08998 * 109.46612 * 234.74968 * 1 2 3 24 24 H 0.97005 * 119.99523 * 180.02562 * 8 7 5 25 25 H 1.07997 * 120.49502 * 0.02860 * 16 15 14 26 26 H 1.08004 * 119.54923 * 180.29612 * 17 16 15 27 27 H 1.08001 * 119.55239 * 179.97438 * 19 18 17 28 28 H 1.07996 * 120.49791 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 16 2.4991 1.3928 0.0000 4 6 3.9437 0.3877 0.0008 5 6 5.2595 0.8635 0.0006 6 1 6.0853 0.1675 0.0007 7 6 5.5058 2.2437 -0.0054 8 7 4.5062 3.0860 -0.0055 9 14 7.2625 2.8788 -0.0134 10 1 8.2041 1.7304 -0.0113 11 1 7.4862 3.7008 -1.2298 12 1 7.4937 3.7101 1.1952 13 7 3.5941 -0.8803 -0.0041 14 6 2.3031 -1.1176 0.0005 15 6 1.7464 -2.4909 0.0000 16 6 2.2942 -3.4888 0.8132 17 6 1.7417 -4.7524 0.7855 18 7 0.7187 -5.0273 -0.0010 19 6 0.1759 -4.1172 -0.7872 20 6 0.6622 -2.8268 -0.8178 21 1 -0.3633 1.0234 0.0941 22 1 -0.3634 -0.4302 -0.9332 23 1 -0.3632 -0.5931 0.8392 24 1 4.6768 4.0409 -0.0101 25 1 3.1343 -3.2718 1.4563 26 1 2.1547 -5.5281 1.4133 27 1 -0.6604 -4.3862 -1.4154 28 1 0.2134 -2.0871 -1.4640 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238470795.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:31 Heat of formation + Delta-G solvation = 26.678327 kcal Electronic energy + Delta-G solvation = -14621.327792 eV Core-core repulsion = 12147.891464 eV Total energy + Delta-G solvation = -2473.436327 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.07437 -39.28529 -36.17064 -33.95872 -32.48804 -31.79122 -29.93367 -26.62017 -24.56424 -24.19057 -23.35121 -20.49585 -19.26578 -17.91607 -17.24851 -16.84560 -16.65308 -16.54830 -15.30304 -15.08207 -14.62738 -14.40761 -14.22719 -13.99460 -13.62124 -13.53196 -13.27785 -12.95910 -12.47516 -12.38028 -11.99177 -11.50191 -11.37135 -10.71857 -10.42839 -10.06704 -9.80952 -9.67209 -9.04304 -8.91437 -6.70476 0.02114 0.25006 0.69548 1.38494 1.44690 1.47333 1.57782 1.93602 2.16337 2.21920 2.91327 3.16248 3.58187 3.70460 4.02363 4.21160 4.23158 4.57319 4.59661 4.65062 4.81920 4.88319 4.93573 4.95190 5.14768 5.26000 5.51052 5.67951 5.79085 5.90654 6.37768 6.39589 7.01733 7.71258 7.99201 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.038816 B = 0.006370 C = 0.005615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.182974 B = 4394.296610 C = 4985.479644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 C -0.420 4.420 3 S 0.115 5.885 4 C 0.167 3.833 5 C -0.402 4.402 6 H 0.100 0.900 7 C 0.022 3.978 8 N -0.799 5.799 9 Si 1.018 2.982 10 H -0.257 1.257 11 H -0.257 1.257 12 H -0.256 1.256 13 N -0.618 5.618 14 C 0.104 3.896 15 C 0.030 3.970 16 C -0.168 4.168 17 C 0.100 3.900 18 N -0.507 5.507 19 C 0.101 3.899 20 C -0.167 4.167 21 H 0.056 0.944 22 H 0.068 0.932 23 H 0.052 0.948 24 H 0.313 0.687 25 H 0.122 0.878 26 H 0.184 0.816 27 H 0.191 0.809 28 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.449 -2.716 -0.278 4.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.547 4.547 3 S 0.375 5.625 4 C -0.086 4.086 5 C -0.444 4.444 6 H 0.117 0.883 7 C -0.198 4.198 8 N -0.428 5.428 9 Si 0.836 3.164 10 H -0.180 1.180 11 H -0.181 1.181 12 H -0.181 1.181 13 N -0.341 5.341 14 C -0.034 4.034 15 C 0.019 3.981 16 C -0.189 4.189 17 C -0.056 4.056 18 N -0.216 5.216 19 C -0.055 4.055 20 C -0.188 4.188 21 H 0.075 0.925 22 H 0.086 0.914 23 H 0.071 0.929 24 H 0.126 0.874 25 H 0.140 0.860 26 H 0.201 0.799 27 H 0.208 0.792 28 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.674 -2.581 -0.281 4.499 hybrid contribution 0.763 0.487 0.093 0.910 sum -2.911 -2.094 -0.188 3.591 Atomic orbital electron populations 1.19797 0.87240 1.01095 1.01087 1.25886 1.02378 0.99063 1.27355 1.84001 0.97623 1.07568 1.73269 1.24190 0.98075 0.89159 0.97135 1.19368 0.90862 0.93491 1.40700 0.88255 1.27160 1.05909 0.95489 0.91289 1.68755 1.35381 1.06306 1.32352 0.84587 0.73470 0.78755 0.79630 1.18013 1.18074 1.18052 1.67349 1.15264 1.18141 1.33325 1.18995 0.88694 0.92658 1.03025 1.18944 0.93834 0.90887 0.94399 1.22288 1.01343 0.94468 1.00803 1.22986 0.91848 0.94865 0.95920 1.67705 1.10697 1.36507 1.06736 1.23110 0.98739 0.88021 0.95672 1.22390 0.97105 0.99148 1.00135 0.92485 0.91376 0.92888 0.87401 0.85991 0.79923 0.79209 0.83911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.23 9.01 71.24 0.64 -0.59 15 2 C -0.42 -19.81 6.40 25.45 0.16 -19.65 15 3 S 0.12 5.81 20.09 -56.49 -1.13 4.68 15 4 C 0.17 9.27 7.11 85.14 0.61 9.88 15 5 C -0.40 -20.98 9.45 23.15 0.22 -20.76 15 6 H 0.10 5.09 7.85 -2.91 -0.02 5.06 15 7 C 0.02 0.98 5.50 85.34 0.47 1.45 15 8 N -0.80 -37.26 10.64 21.87 0.23 -37.02 15 9 Si 1.02 34.12 29.56 68.60 2.03 36.15 15 10 H -0.26 -8.59 7.11 99.48 0.71 -7.88 15 11 H -0.26 -8.10 7.11 99.48 0.71 -7.39 15 12 H -0.26 -8.08 7.11 99.48 0.71 -7.38 15 13 N -0.62 -34.29 10.62 -183.97 -1.95 -36.24 15 14 C 0.10 5.18 6.33 41.63 0.26 5.45 15 15 C 0.03 1.24 5.61 -19.83 -0.11 1.13 15 16 C -0.17 -6.35 9.84 22.60 0.22 -6.13 15 17 C 0.10 3.09 11.17 84.60 0.95 4.03 15 18 N -0.51 -15.71 10.35 -196.16 -2.03 -17.74 15 19 C 0.10 2.89 11.17 84.60 0.94 3.83 15 20 C -0.17 -5.66 8.82 22.60 0.20 -5.46 15 21 H 0.06 1.95 8.14 -2.39 -0.02 1.93 15 22 H 0.07 2.19 6.33 -2.39 -0.02 2.18 15 23 H 0.05 1.85 8.14 -2.39 -0.02 1.83 15 24 H 0.31 12.70 8.29 -92.70 -0.77 11.93 15 25 H 0.12 4.79 8.06 -2.91 -0.02 4.76 15 26 H 0.18 4.29 8.06 -2.91 -0.02 4.26 15 27 H 0.19 3.81 8.06 -2.91 -0.02 3.79 15 28 H 0.14 4.47 6.09 -2.91 -0.02 4.45 15 Total: -1.00 -62.35 261.99 2.89 -59.46 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 1.19 Total: 17.54 kcal Atomic # 6 Polarization: -31.37 SS G_CDS: 4.56 Total: -26.81 kcal Atomic # 7 Polarization: -87.26 SS G_CDS: -3.75 Total: -91.01 kcal Atomic # 14 Polarization: 34.12 SS G_CDS: 2.03 Total: 36.15 kcal Atomic # 16 Polarization: 5.81 SS G_CDS: -1.13 Total: 4.68 kcal Total: -62.35 2.89 -59.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238470795.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.135 kcal (2) G-P(sol) polarization free energy of solvation -62.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds