Wall clock time and date at job start Mon Mar 30 2020 05:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86799 * 119.99992 * 2 1 4 4 H 1.48501 * 109.47086 * 270.00001 * 3 2 1 5 5 H 1.48506 * 109.46901 * 30.00188 * 3 2 1 6 6 H 1.48501 * 109.47054 * 149.99986 * 3 2 1 7 7 C 1.39974 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99464 * 195.51692 * 7 2 1 9 9 C 1.41156 * 120.00207 * 15.52394 * 7 2 1 10 10 C 1.41538 * 119.87526 * 26.15076 * 9 7 2 11 11 C 1.35298 * 120.75359 * 180.23582 * 10 9 7 12 12 C 1.41108 * 120.21177 * 359.79628 * 11 10 9 13 13 C 1.40206 * 120.90524 * 180.02562 * 12 11 10 14 14 C 1.36385 * 119.78354 * 179.97438 * 13 12 11 15 15 C 1.39288 * 121.04050 * 359.97438 * 14 13 12 16 16 C 1.36161 * 120.91061 * 0.02562 * 15 14 13 17 17 C 1.40846 * 119.63485 * 0.02562 * 16 15 14 18 18 C 1.39959 * 121.02537 * 180.02562 * 17 16 15 19 19 C 1.50693 * 120.32562 * 359.95139 * 18 17 16 20 20 Cl 1.80304 * 109.47287 * 89.99984 * 19 18 17 21 21 H 0.96993 * 120.00005 * 359.97438 * 1 2 3 22 22 H 1.07999 * 119.62759 * 359.97438 * 10 9 7 23 23 H 1.07998 * 119.89080 * 179.76879 * 11 10 9 24 24 H 1.07995 * 120.10260 * 359.97438 * 13 12 11 25 25 H 1.08007 * 119.48408 * 179.97438 * 14 13 12 26 26 H 1.07994 * 119.55055 * 180.02562 * 15 14 13 27 27 H 1.08001 * 120.18156 * 180.02562 * 16 15 14 28 28 H 1.09000 * 109.47627 * 330.00202 * 19 18 17 29 29 H 1.09000 * 109.47250 * 209.99894 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4396 2.6526 0.7001 6 1 3.5397 1.4401 0.7000 7 6 2.0080 -1.2122 0.0005 8 1 3.0585 -1.2291 0.2508 9 6 1.3408 -2.4125 -0.3261 10 6 0.1963 -2.3791 -1.1581 11 6 -0.4596 -3.5182 -1.4786 12 6 -0.0056 -4.7609 -0.9880 13 6 -0.6739 -5.9503 -1.3114 14 6 -0.2149 -7.1390 -0.8250 15 6 0.9123 -7.1938 -0.0086 16 6 1.5882 -6.0606 0.3276 17 6 1.1427 -4.8148 -0.1553 18 6 1.8156 -3.6319 0.1716 19 6 3.0370 -3.6702 1.0534 20 17 4.5098 -3.8666 0.0320 21 1 -0.4850 0.8400 0.0004 22 1 -0.1600 -1.4330 -1.5381 23 1 -1.3336 -3.4761 -2.1116 24 1 -1.5491 -5.9252 -1.9435 25 1 -0.7336 -8.0523 -1.0769 26 1 1.2550 -8.1482 0.3628 27 1 2.4611 -6.1168 0.9611 28 1 2.9599 -4.5092 1.7449 29 1 3.1074 -2.7400 1.6173 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238513527.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:31 Heat of formation + Delta-G solvation = 7.150174 kcal Electronic energy + Delta-G solvation = -15004.549473 eV Core-core repulsion = 12495.929884 eV Total energy + Delta-G solvation = -2508.619589 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.051 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.09883 -36.01861 -34.85710 -33.39570 -32.31839 -29.53799 -28.85159 -26.38614 -24.81014 -22.00059 -21.53277 -19.55510 -17.92283 -16.06775 -15.79936 -15.47556 -14.49808 -13.68810 -13.45267 -13.33647 -12.97465 -12.55483 -12.15334 -12.10926 -12.01061 -11.54776 -11.39223 -11.27551 -10.78290 -10.39335 -10.12045 -10.01080 -9.82748 -9.41188 -9.34700 -9.13911 -8.68873 -7.49182 -7.18567 -6.79202 -4.62751 1.65033 2.26374 2.78006 2.92642 2.96821 3.01647 3.70232 3.72732 3.96517 4.68697 5.51178 5.60454 5.68527 5.86246 5.96618 6.06996 6.11955 6.28038 6.43230 6.52828 6.65621 6.74304 6.87094 6.99987 7.20905 7.31697 7.40656 7.47563 7.71788 7.74635 7.99075 8.01900 8.25530 8.56706 8.63151 9.80734 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.024004 B = 0.008924 C = 0.006795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.201361 B = 3136.852311 C = 4119.727544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.072 3.928 3 Si 0.914 3.086 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.257 1.257 7 C -0.432 4.432 8 H 0.092 0.908 9 C 0.137 3.863 10 C -0.103 4.103 11 C -0.118 4.118 12 C -0.124 4.124 13 C -0.082 4.082 14 C -0.190 4.190 15 C -0.114 4.114 16 C -0.150 4.150 17 C 0.032 3.968 18 C -0.274 4.274 19 C 0.058 3.942 20 Cl -0.236 7.236 21 H 0.288 0.712 22 H 0.125 0.875 23 H 0.100 0.900 24 H 0.105 0.895 25 H 0.100 0.900 26 H 0.101 0.899 27 H 0.109 0.891 28 H 0.073 0.927 29 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.618 -2.748 0.372 2.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.148 4.148 3 Si 0.738 3.262 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.181 1.181 7 C -0.459 4.459 8 H 0.110 0.890 9 C 0.133 3.867 10 C -0.121 4.121 11 C -0.137 4.137 12 C -0.125 4.125 13 C -0.100 4.100 14 C -0.208 4.208 15 C -0.132 4.132 16 C -0.168 4.168 17 C 0.032 3.968 18 C -0.276 4.276 19 C -0.004 4.004 20 Cl -0.210 7.210 21 H 0.099 0.901 22 H 0.143 0.857 23 H 0.118 0.882 24 H 0.123 0.877 25 H 0.118 0.882 26 H 0.119 0.881 27 H 0.127 0.873 28 H 0.092 0.908 29 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.518 -2.577 0.327 2.649 hybrid contribution 0.243 0.708 -0.069 0.752 sum 0.762 -1.869 0.258 2.035 Atomic orbital electron populations 1.69782 1.07828 1.30260 1.32238 1.26123 0.94862 1.02071 0.91778 0.86176 0.80623 0.79615 0.79798 1.18863 1.19990 1.18062 1.19901 0.97944 0.90593 1.37468 0.89040 1.17436 0.90081 0.91894 0.87278 1.21311 0.96090 0.97406 0.97292 1.20692 0.99533 0.92394 1.01054 1.17787 0.98076 0.93205 1.03417 1.20774 0.98254 0.92430 0.98563 1.20341 0.99628 0.96980 1.03879 1.20498 0.96259 0.97327 0.99103 1.20885 1.00559 0.92362 1.03032 1.17578 0.93013 0.92503 0.93736 1.19207 1.02403 0.92868 1.13166 1.22662 0.82918 1.02632 0.92138 1.98670 1.48103 1.98388 1.75844 0.90098 0.85722 0.88231 0.87706 0.88182 0.88094 0.87320 0.90848 0.89137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.02 10.89 55.55 0.60 -17.41 15 2 C 0.07 1.63 5.16 -17.33 -0.09 1.54 15 3 Si 0.91 17.12 29.59 -169.99 -5.03 12.09 15 4 H -0.26 -4.93 7.11 56.52 0.40 -4.53 15 5 H -0.27 -5.03 7.11 56.52 0.40 -4.63 15 6 H -0.26 -4.81 7.11 56.52 0.40 -4.41 15 7 C -0.43 -10.32 8.10 -37.83 -0.31 -10.62 15 8 H 0.09 2.14 6.83 -52.48 -0.36 1.78 15 9 C 0.14 3.35 5.56 -106.87 -0.59 2.75 15 10 C -0.10 -2.45 8.56 -39.37 -0.34 -2.79 15 11 C -0.12 -2.62 9.71 -39.54 -0.38 -3.00 15 12 C -0.12 -2.77 5.75 -106.65 -0.61 -3.38 15 13 C -0.08 -1.60 9.75 -39.51 -0.39 -1.98 15 14 C -0.19 -3.46 9.95 -39.86 -0.40 -3.85 15 15 C -0.11 -2.09 9.95 -39.94 -0.40 -2.49 15 16 C -0.15 -3.03 9.28 -39.34 -0.37 -3.40 15 17 C 0.03 0.73 5.74 -106.84 -0.61 0.11 15 18 C -0.27 -6.33 5.37 -103.32 -0.55 -6.89 15 19 C 0.06 1.17 5.68 36.00 0.20 1.38 15 20 Cl -0.24 -4.72 29.13 -51.86 -1.51 -6.23 15 21 H 0.29 6.03 8.30 -40.82 -0.34 5.69 15 22 H 0.13 3.00 6.13 -52.49 -0.32 2.68 15 23 H 0.10 1.94 8.06 -52.49 -0.42 1.51 15 24 H 0.10 1.77 8.06 -52.49 -0.42 1.35 15 25 H 0.10 1.54 8.06 -52.48 -0.42 1.11 15 26 H 0.10 1.56 8.06 -52.49 -0.42 1.14 15 27 H 0.11 2.03 6.35 -52.49 -0.33 1.70 15 28 H 0.07 1.35 6.41 -51.93 -0.33 1.02 15 29 H 0.09 1.83 6.75 -51.93 -0.35 1.48 15 LS Contribution 262.49 15.07 3.96 3.96 Total: -1.00 -25.00 262.49 -9.33 -34.33 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -2.52 Total: 5.89 kcal Atomic # 6 Polarization: -27.79 SS G_CDS: -4.83 Total: -32.62 kcal Atomic # 7 Polarization: -18.02 SS G_CDS: 0.60 Total: -17.41 kcal Atomic # 14 Polarization: 17.12 SS G_CDS: -5.03 Total: 12.09 kcal Atomic # 17 Polarization: -4.72 SS G_CDS: -1.51 Total: -6.23 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -25.00 -9.33 -34.33 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238513527.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.483 kcal (2) G-P(sol) polarization free energy of solvation -24.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds