Wall clock time and date at job start Mon Mar 30 2020 05:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86799 * 119.99992 * 2 1 4 4 H 1.48501 * 109.47086 * 270.00001 * 3 2 1 5 5 H 1.48506 * 109.46901 * 30.00188 * 3 2 1 6 6 H 1.48501 * 109.47054 * 149.99986 * 3 2 1 7 7 C 1.39974 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99464 * 195.51692 * 7 2 1 9 9 C 1.41156 * 120.00207 * 15.52394 * 7 2 1 10 10 C 1.41538 * 119.87526 * 26.15076 * 9 7 2 11 11 C 1.35298 * 120.75359 * 180.23582 * 10 9 7 12 12 C 1.41108 * 120.21177 * 359.79628 * 11 10 9 13 13 C 1.40206 * 120.90524 * 180.02562 * 12 11 10 14 14 C 1.36385 * 119.78354 * 179.97438 * 13 12 11 15 15 C 1.39288 * 121.04050 * 359.97438 * 14 13 12 16 16 C 1.36161 * 120.91061 * 0.02562 * 15 14 13 17 17 C 1.40846 * 119.63485 * 0.02562 * 16 15 14 18 18 C 1.39959 * 121.02537 * 180.02562 * 17 16 15 19 19 C 1.50693 * 120.32562 * 359.95139 * 18 17 16 20 20 Cl 1.80304 * 109.47287 * 89.99984 * 19 18 17 21 21 H 0.96993 * 120.00005 * 359.97438 * 1 2 3 22 22 H 1.07999 * 119.62759 * 359.97438 * 10 9 7 23 23 H 1.07998 * 119.89080 * 179.76879 * 11 10 9 24 24 H 1.07995 * 120.10260 * 359.97438 * 13 12 11 25 25 H 1.08007 * 119.48408 * 179.97438 * 14 13 12 26 26 H 1.07994 * 119.55055 * 180.02562 * 15 14 13 27 27 H 1.08001 * 120.18156 * 180.02562 * 16 15 14 28 28 H 1.09000 * 109.47627 * 330.00202 * 19 18 17 29 29 H 1.09000 * 109.47250 * 209.99894 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4396 2.6526 0.7001 6 1 3.5397 1.4401 0.7000 7 6 2.0080 -1.2122 0.0005 8 1 3.0585 -1.2291 0.2508 9 6 1.3408 -2.4125 -0.3261 10 6 0.1963 -2.3791 -1.1581 11 6 -0.4596 -3.5182 -1.4786 12 6 -0.0056 -4.7609 -0.9880 13 6 -0.6739 -5.9503 -1.3114 14 6 -0.2149 -7.1390 -0.8250 15 6 0.9123 -7.1938 -0.0086 16 6 1.5882 -6.0606 0.3276 17 6 1.1427 -4.8148 -0.1553 18 6 1.8156 -3.6319 0.1716 19 6 3.0370 -3.6702 1.0534 20 17 4.5098 -3.8666 0.0320 21 1 -0.4850 0.8400 0.0004 22 1 -0.1600 -1.4330 -1.5381 23 1 -1.3336 -3.4761 -2.1116 24 1 -1.5491 -5.9252 -1.9435 25 1 -0.7336 -8.0523 -1.0769 26 1 1.2550 -8.1482 0.3628 27 1 2.4611 -6.1168 0.9611 28 1 2.9599 -4.5092 1.7449 29 1 3.1074 -2.7400 1.6173 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238513527.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:30 Heat of formation + Delta-G solvation = -2.520727 kcal Electronic energy + Delta-G solvation = -15004.968835 eV Core-core repulsion = 12495.929884 eV Total energy + Delta-G solvation = -2509.038951 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.051 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.71297 -37.63466 -36.49059 -35.04965 -33.95823 -31.17955 -30.43390 -28.04981 -26.47632 -23.59062 -23.15976 -21.20043 -19.59437 -17.66740 -17.40660 -17.10568 -16.07364 -15.23645 -15.08788 -14.92976 -14.54036 -14.14847 -13.80075 -13.71462 -13.62077 -13.13631 -12.95659 -12.82987 -12.32065 -11.94044 -11.71972 -11.64692 -11.43915 -11.05900 -10.96807 -10.78274 -10.30297 -9.16155 -8.84680 -8.43431 -6.38052 0.03098 0.64883 1.21490 1.38530 1.47430 1.50790 2.05598 2.15573 2.34201 3.04412 3.82350 4.03972 4.24627 4.34260 4.44287 4.52286 4.57044 4.65772 4.83857 4.92961 5.04926 5.10819 5.26804 5.38088 5.58848 5.71141 5.79339 5.88037 6.00872 6.07834 6.31639 6.42376 6.53215 6.83554 6.91386 8.17550 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.024004 B = 0.008924 C = 0.006795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.201361 B = 3136.852311 C = 4119.727544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.039 3.961 3 Si 0.978 3.022 4 H -0.263 1.263 5 H -0.266 1.266 6 H -0.257 1.257 7 C -0.461 4.461 8 H 0.087 0.913 9 C 0.109 3.891 10 C -0.132 4.132 11 C -0.116 4.116 12 C -0.151 4.151 13 C -0.091 4.091 14 C -0.180 4.180 15 C -0.108 4.108 16 C -0.163 4.163 17 C 0.006 3.994 18 C -0.285 4.285 19 C 0.064 3.936 20 Cl -0.232 7.232 21 H 0.294 0.706 22 H 0.113 0.887 23 H 0.121 0.879 24 H 0.130 0.870 25 H 0.138 0.862 26 H 0.137 0.863 27 H 0.120 0.880 28 H 0.092 0.908 29 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.560 -4.471 0.421 4.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.178 4.178 3 Si 0.799 3.201 4 H -0.187 1.187 5 H -0.190 1.190 6 H -0.181 1.181 7 C -0.489 4.489 8 H 0.105 0.895 9 C 0.106 3.894 10 C -0.150 4.150 11 C -0.135 4.135 12 C -0.151 4.151 13 C -0.109 4.109 14 C -0.199 4.199 15 C -0.126 4.126 16 C -0.181 4.181 17 C 0.005 3.995 18 C -0.288 4.288 19 C 0.002 3.998 20 Cl -0.206 7.206 21 H 0.105 0.895 22 H 0.131 0.869 23 H 0.139 0.861 24 H 0.148 0.852 25 H 0.155 0.845 26 H 0.155 0.845 27 H 0.138 0.862 28 H 0.111 0.889 29 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.455 -4.317 0.376 4.357 hybrid contribution 0.209 0.964 -0.102 0.992 sum 0.664 -3.353 0.274 3.429 Atomic orbital electron populations 1.69818 1.08957 1.31310 1.33168 1.26809 0.95467 1.04584 0.90983 0.85235 0.79278 0.75935 0.79676 1.18728 1.18992 1.18109 1.19988 0.97882 0.91511 1.39517 0.89539 1.17757 0.90804 0.92846 0.88019 1.21298 0.97279 0.97629 0.98827 1.20970 0.99699 0.92197 1.00599 1.18128 0.98720 0.94206 1.04061 1.21096 0.98935 0.91906 0.98921 1.20836 0.99054 0.97887 1.02076 1.20970 0.95572 0.98200 0.97856 1.21082 1.01397 0.92119 1.03510 1.17913 0.93594 0.93384 0.94578 1.19542 1.03212 0.92883 1.13135 1.22618 0.82139 1.03208 0.91810 1.98663 1.47632 1.98363 1.75916 0.89451 0.86916 0.86112 0.85225 0.84452 0.84485 0.86247 0.88936 0.89646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.70 10.89 21.83 0.24 -38.46 15 2 C 0.04 1.82 5.16 85.26 0.44 2.26 15 3 Si 0.98 35.66 29.59 68.60 2.03 37.69 15 4 H -0.26 -9.42 7.11 99.48 0.71 -8.72 15 5 H -0.27 -9.17 7.11 99.48 0.71 -8.46 15 6 H -0.26 -9.28 7.11 99.48 0.71 -8.58 15 7 C -0.46 -22.86 8.10 23.41 0.19 -22.67 15 8 H 0.09 4.20 6.83 -2.91 -0.02 4.18 15 9 C 0.11 5.53 5.56 -21.32 -0.12 5.41 15 10 C -0.13 -6.54 8.56 22.41 0.19 -6.35 15 11 C -0.12 -5.20 9.71 22.30 0.22 -4.99 15 12 C -0.15 -6.58 5.75 -21.18 -0.12 -6.70 15 13 C -0.09 -3.28 9.75 22.32 0.22 -3.06 15 14 C -0.18 -5.79 9.95 22.09 0.22 -5.57 15 15 C -0.11 -3.55 9.95 22.04 0.22 -3.33 15 16 C -0.16 -6.23 9.28 22.42 0.21 -6.02 15 17 C 0.01 0.25 5.74 -21.30 -0.12 0.13 15 18 C -0.29 -13.37 5.37 -19.02 -0.10 -13.47 15 19 C 0.06 2.58 5.68 71.23 0.40 2.99 15 20 Cl -0.23 -9.17 29.13 -2.72 -0.08 -9.25 15 21 H 0.29 12.68 8.30 -92.71 -0.77 11.91 15 22 H 0.11 5.72 6.13 -2.91 -0.02 5.70 15 23 H 0.12 4.67 8.06 -2.91 -0.02 4.65 15 24 H 0.13 3.95 8.06 -2.91 -0.02 3.93 15 25 H 0.14 3.41 8.06 -2.91 -0.02 3.39 15 26 H 0.14 3.51 8.06 -2.91 -0.02 3.48 15 27 H 0.12 4.20 6.35 -2.91 -0.02 4.18 15 28 H 0.09 3.33 6.41 -2.39 -0.02 3.31 15 29 H 0.09 3.52 6.75 -2.39 -0.02 3.50 15 Total: -1.00 -54.14 262.49 5.20 -48.94 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: 1.17 Total: 22.47 kcal Atomic # 6 Polarization: -63.23 SS G_CDS: 1.84 Total: -61.39 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.24 Total: -38.46 kcal Atomic # 14 Polarization: 35.66 SS G_CDS: 2.03 Total: 37.69 kcal Atomic # 17 Polarization: -9.17 SS G_CDS: -0.08 Total: -9.25 kcal Total: -54.14 5.20 -48.94 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238513527.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.423 kcal (2) G-P(sol) polarization free energy of solvation -54.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds