Wall clock time and date at job start Mon Mar 30 2020 06:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38345 * 119.97720 * 2 1 4 4 C 1.38779 * 120.59777 * 179.97438 * 3 2 1 5 5 C 1.36531 * 120.53157 * 0.27418 * 4 3 2 6 6 C 1.40681 * 119.92903 * 359.43504 * 5 4 3 7 7 C 1.41158 * 120.29134 * 180.29223 * 6 5 4 8 8 H 1.07991 * 120.00384 * 154.55757 * 7 6 5 9 9 C 1.39938 * 119.99341 * 334.55788 * 7 6 5 10 10 N 1.30863 * 120.00552 * 343.25944 * 9 7 6 11 11 Si 1.86807 * 119.99694 * 163.26144 * 9 7 6 12 12 H 1.48496 * 109.47312 * 89.99574 * 11 9 7 13 13 H 1.48494 * 109.47014 * 210.00042 * 11 9 7 14 14 H 1.48501 * 109.46923 * 329.99862 * 11 9 7 15 15 C 1.38403 * 119.97220 * 179.97438 * 2 1 3 16 16 O 1.35642 * 120.27009 * 359.97438 * 15 2 1 17 17 C 1.42904 * 116.99989 * 89.99542 * 16 15 2 18 18 F 1.39901 * 109.47049 * 60.00302 * 17 16 15 19 19 F 1.39901 * 109.47058 * 180.02562 * 17 16 15 20 20 F 1.39900 * 109.47049 * 300.00215 * 17 16 15 21 21 H 1.09008 * 109.47094 * 90.00312 * 1 2 3 22 22 H 1.09000 * 109.47695 * 209.99724 * 1 2 3 23 23 H 1.08999 * 109.47374 * 330.00366 * 1 2 3 24 24 H 1.08005 * 119.70285 * 359.97438 * 3 2 1 25 25 H 1.07996 * 119.73202 * 180.02562 * 4 3 2 26 26 H 1.07994 * 120.02882 * 179.70179 * 5 4 3 27 27 H 0.96996 * 120.00203 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1984 0.0000 4 6 3.5859 1.2134 0.0005 5 6 4.2922 0.0450 -0.0046 6 6 3.6120 -1.1864 0.0016 7 6 4.3346 -2.3990 0.0026 8 1 3.8871 -3.2940 0.4087 9 6 5.6310 -2.4413 -0.5226 10 7 6.0545 -1.4762 -1.2984 11 14 6.7570 -3.8754 -0.1164 12 1 6.5788 -4.9469 -1.1290 13 1 8.1686 -3.4146 -0.1263 14 1 6.4185 -4.4048 1.2291 15 6 2.1984 -1.1989 0.0005 16 8 1.5252 -2.3765 0.0016 17 6 1.2026 -2.9405 -1.2712 18 9 2.3805 -3.1816 -1.9865 19 9 0.5138 -4.1442 -1.0868 20 9 0.3972 -2.0477 -1.9863 21 1 -0.3634 -0.0001 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3634 0.8900 0.5138 24 1 1.6530 2.1307 -0.0004 25 1 4.1113 2.1569 0.0009 26 1 5.3719 0.0662 -0.0090 27 1 6.9530 -1.5057 -1.6627 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238516997.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:38 Heat of formation + Delta-G solvation = -207.604452 kcal Electronic energy + Delta-G solvation = -18515.936007 eV Core-core repulsion = 15015.438053 eV Total energy + Delta-G solvation = -3500.497954 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.95759 -48.76335 -48.58344 -40.49719 -37.90494 -35.92069 -33.01207 -31.31868 -27.82934 -27.09843 -26.11372 -22.83756 -22.20690 -20.08586 -19.75981 -19.67008 -18.95085 -17.37596 -16.82611 -16.25409 -15.74443 -15.55161 -15.41051 -15.13931 -14.90120 -14.84598 -14.70060 -14.62675 -14.18331 -13.90284 -13.47046 -13.35887 -13.16527 -12.79265 -12.64419 -12.27605 -12.11813 -11.64118 -11.17530 -11.11018 -9.43362 -9.23384 -8.77736 -6.47647 0.38318 0.92762 1.35997 1.45149 1.50381 1.52902 2.15562 2.46336 2.65607 3.32425 3.42755 3.68508 4.25228 4.36286 4.62504 4.74711 4.85465 4.98994 5.04200 5.13351 5.21588 5.43351 5.70089 5.89606 6.06746 6.16587 6.20428 6.57898 6.73745 6.93303 8.16611 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.021214 B = 0.012012 C = 0.008429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.535519 B = 2330.512524 C = 3321.020763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.050 4.050 3 C -0.235 4.235 4 C -0.088 4.088 5 C -0.182 4.182 6 C 0.092 3.908 7 C -0.459 4.459 8 H 0.073 0.927 9 C 0.040 3.960 10 N -0.802 5.802 11 Si 0.978 3.022 12 H -0.264 1.264 13 H -0.257 1.257 14 H -0.258 1.258 15 C -0.106 4.106 16 O -0.304 6.304 17 C 0.569 3.431 18 F -0.182 7.182 19 F -0.152 7.152 20 F -0.183 7.183 21 H 0.069 0.931 22 H 0.057 0.943 23 H 0.086 0.914 24 H 0.132 0.868 25 H 0.124 0.876 26 H 0.113 0.887 27 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.011 0.162 0.257 4.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.051 4.051 3 C -0.254 4.254 4 C -0.107 4.107 5 C -0.201 4.201 6 C 0.088 3.912 7 C -0.487 4.487 8 H 0.091 0.909 9 C -0.178 4.178 10 N -0.426 5.426 11 Si 0.798 3.202 12 H -0.189 1.189 13 H -0.181 1.181 14 H -0.182 1.182 15 C -0.150 4.150 16 O -0.225 6.225 17 C 0.480 3.520 18 F -0.164 7.164 19 F -0.134 7.134 20 F -0.165 7.165 21 H 0.088 0.912 22 H 0.076 0.924 23 H 0.105 0.895 24 H 0.149 0.851 25 H 0.142 0.858 26 H 0.131 0.869 27 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.884 0.121 0.213 3.892 hybrid contribution 0.566 -0.776 -0.432 1.053 sum -3.318 -0.655 -0.219 3.390 Atomic orbital electron populations 1.20733 0.90227 1.02905 1.02244 1.20053 0.96634 0.91963 0.96435 1.20577 0.93798 0.96282 1.14724 1.20897 0.94573 0.97590 0.97623 1.21033 0.99740 0.91698 1.07656 1.18108 0.90454 0.94717 0.87886 1.19703 0.98861 0.96154 1.33940 0.90927 1.26781 0.99167 1.00141 0.91734 1.69837 1.19391 1.32655 1.20680 0.85253 0.77274 0.77624 0.80047 1.18884 1.18077 1.18164 1.18360 0.90122 0.81818 1.24695 1.86514 1.74443 1.39110 1.22444 1.21010 0.74525 0.75995 0.80455 1.93266 1.49033 1.94380 1.79721 1.93165 1.79641 1.45242 1.95332 1.93166 1.74485 1.69046 1.79791 0.91211 0.92443 0.89532 0.85055 0.85839 0.86950 0.89365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.59 8.81 71.23 0.63 -2.96 15 2 C -0.05 -2.17 5.74 -19.80 -0.11 -2.29 15 3 C -0.23 -9.54 9.69 22.42 0.22 -9.33 15 4 C -0.09 -3.81 9.97 22.00 0.22 -3.59 15 5 C -0.18 -9.10 8.63 22.47 0.19 -8.91 15 6 C 0.09 4.86 5.46 -21.20 -0.12 4.74 15 7 C -0.46 -24.31 7.46 23.40 0.17 -24.13 15 8 H 0.07 3.89 7.67 -2.92 -0.02 3.87 15 9 C 0.04 1.95 5.15 85.25 0.44 2.39 15 10 N -0.80 -39.77 10.95 21.83 0.24 -39.53 15 11 Si 0.98 37.21 29.59 68.60 2.03 39.24 15 12 H -0.26 -9.89 7.11 99.48 0.71 -9.19 15 13 H -0.26 -9.01 7.11 99.48 0.71 -8.31 15 14 H -0.26 -9.75 7.11 99.48 0.71 -9.04 15 15 C -0.11 -5.23 5.34 23.08 0.12 -5.10 15 16 O -0.30 -14.43 8.67 -89.56 -0.78 -15.21 15 17 C 0.57 24.76 3.80 113.37 0.43 25.19 15 18 F -0.18 -8.72 15.82 44.97 0.71 -8.01 15 19 F -0.15 -5.90 17.53 44.97 0.79 -5.11 15 20 F -0.18 -7.42 15.18 44.97 0.68 -6.74 15 21 H 0.07 2.30 7.30 -2.38 -0.02 2.28 15 22 H 0.06 1.99 7.53 -2.39 -0.02 1.97 15 23 H 0.09 2.44 8.09 -2.39 -0.02 2.42 15 24 H 0.13 4.38 8.06 -2.91 -0.02 4.36 15 25 H 0.12 4.49 8.06 -2.91 -0.02 4.47 15 26 H 0.11 5.76 6.18 -2.91 -0.02 5.75 15 27 H 0.30 13.08 8.30 -92.71 -0.77 12.31 15 Total: -1.00 -55.56 250.30 7.08 -48.47 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: 1.21 Total: 10.87 kcal Atomic # 6 Polarization: -26.19 SS G_CDS: 2.20 Total: -24.00 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 0.24 Total: -39.53 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -0.78 Total: -15.21 kcal Atomic # 9 Polarization: -22.03 SS G_CDS: 2.18 Total: -19.85 kcal Atomic # 14 Polarization: 37.21 SS G_CDS: 2.03 Total: 39.24 kcal Total: -55.56 7.08 -48.47 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238516997.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.131 kcal (2) G-P(sol) polarization free energy of solvation -55.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds