Wall clock time and date at job start Mon Mar 30 2020 05:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30727 * 1 3 3 Si 1.86797 * 120.00275 * 2 1 4 4 H 1.48497 * 109.47291 * 275.37907 * 3 2 1 5 5 H 1.48500 * 109.47056 * 35.37790 * 3 2 1 6 6 H 1.48499 * 109.47466 * 155.37664 * 3 2 1 7 7 C 1.40162 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00155 * 342.03168 * 7 2 1 9 9 C 1.40450 * 119.99629 * 162.03625 * 7 2 1 10 10 C 1.40523 * 120.72291 * 329.94195 * 9 7 2 11 11 C 1.38156 * 120.42769 * 179.97438 * 10 9 7 12 12 C 1.37670 * 121.79325 * 359.97438 * 11 10 9 13 13 C 1.40648 * 120.79589 * 0.26923 * 12 11 10 14 14 C 1.40508 * 121.16106 * 180.28348 * 13 12 11 15 15 C 1.50701 * 120.11791 * 359.44005 * 14 13 12 16 16 Cl 1.80301 * 109.46707 * 270.25598 * 15 14 13 17 17 C 1.36332 * 119.76821 * 179.68775 * 14 13 12 18 18 C 1.39079 * 120.93381 * 359.77249 * 17 14 13 19 19 C 1.37692 * 120.71193 * 359.97438 * 18 17 14 20 20 C 1.39527 * 119.56159 * 359.97438 * 19 18 17 21 21 H 0.97005 * 120.00218 * 359.97438 * 1 2 3 22 22 H 1.08001 * 119.78703 * 359.97438 * 10 9 7 23 23 H 1.08000 * 119.09923 * 179.97438 * 11 10 9 24 24 H 1.07999 * 119.60110 * 179.97438 * 12 11 10 25 25 H 1.08997 * 109.47134 * 30.25364 * 15 14 13 26 26 H 1.08998 * 109.47516 * 150.25238 * 15 14 13 27 27 H 1.08007 * 119.53717 * 179.74801 * 17 14 13 28 28 H 1.08001 * 119.64797 * 179.97438 * 18 17 14 29 29 H 1.08003 * 120.21815 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.3752 2.1120 -1.3939 5 1 1.5003 2.6172 0.8106 6 1 3.5911 1.4100 0.5833 7 6 2.0080 -1.2139 -0.0005 8 1 1.5076 -2.1264 0.2876 9 6 3.3612 -1.2433 -0.3757 10 6 3.8691 -0.3185 -1.3038 11 6 5.2014 -0.3527 -1.6681 12 6 6.0731 -1.2803 -1.1439 13 6 5.6314 -2.2386 -0.2140 14 6 6.5157 -3.1852 0.3303 15 6 7.9634 -3.1957 -0.0881 16 17 8.1665 -4.2688 -1.5227 17 6 6.0583 -4.0973 1.2345 18 6 4.7256 -4.1033 1.6323 19 6 3.8351 -3.1857 1.1215 20 6 4.2764 -2.2401 0.1953 21 1 -0.4851 0.8401 0.0004 22 1 3.2139 0.4238 -1.7352 23 1 5.5689 0.3680 -2.3836 24 1 7.1076 -1.2752 -1.4541 25 1 8.2748 -2.1832 -0.3447 26 1 8.5763 -3.5671 0.7332 27 1 6.7404 -4.8258 1.6475 28 1 4.3855 -4.8355 2.3497 29 1 2.8019 -3.1979 1.4357 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238520249.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:51 Heat of formation + Delta-G solvation = 8.982380 kcal Electronic energy + Delta-G solvation = -14933.349399 eV Core-core repulsion = 12424.809260 eV Total energy + Delta-G solvation = -2508.540139 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.051 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.16627 -35.93427 -35.29346 -33.88814 -32.44343 -29.74434 -29.31412 -25.98966 -25.23236 -22.13822 -21.79515 -19.75412 -17.74136 -16.27346 -16.09869 -15.32054 -15.04945 -14.05531 -13.66445 -13.38468 -13.29809 -12.85500 -12.36745 -12.28708 -12.12528 -11.78242 -11.40055 -11.09088 -10.95991 -10.52421 -10.29973 -10.01492 -9.95789 -9.83749 -9.55464 -9.31215 -8.62555 -7.63860 -7.32729 -7.02827 -4.68658 1.41249 2.10659 2.56475 2.94447 3.01911 3.15002 3.29119 3.77698 3.94653 4.51099 5.15473 5.18165 5.33512 5.61006 5.66459 5.77881 5.98440 6.06899 6.22144 6.35979 6.55041 6.59271 6.66279 6.96122 7.14117 7.15546 7.22759 7.35358 7.61317 7.70381 7.82492 7.90728 8.07101 8.38747 8.46754 9.64961 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.033245 B = 0.007405 C = 0.006475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.026285 B = 3780.283031 C = 4323.249269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.081 3.919 3 Si 0.923 3.077 4 H -0.266 1.266 5 H -0.290 1.290 6 H -0.239 1.239 7 C -0.403 4.403 8 H 0.100 0.900 9 C 0.108 3.892 10 C -0.302 4.302 11 C -0.025 4.025 12 C -0.283 4.283 13 C 0.035 3.965 14 C -0.156 4.156 15 C 0.028 3.972 16 Cl -0.200 7.200 17 C -0.078 4.078 18 C -0.196 4.196 19 C -0.050 4.050 20 C -0.111 4.111 21 H 0.294 0.706 22 H 0.099 0.901 23 H 0.091 0.909 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.088 0.912 27 H 0.105 0.895 28 H 0.108 0.892 29 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.205 -1.787 1.777 8.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.143 4.143 3 Si 0.749 3.251 4 H -0.192 1.192 5 H -0.217 1.217 6 H -0.162 1.162 7 C -0.428 4.428 8 H 0.118 0.882 9 C 0.104 3.896 10 C -0.321 4.321 11 C -0.044 4.044 12 C -0.302 4.302 13 C 0.035 3.965 14 C -0.156 4.156 15 C -0.034 4.034 16 Cl -0.174 7.174 17 C -0.097 4.097 18 C -0.214 4.214 19 C -0.069 4.069 20 C -0.112 4.112 21 H 0.105 0.895 22 H 0.117 0.883 23 H 0.109 0.891 24 H 0.115 0.885 25 H 0.115 0.885 26 H 0.107 0.893 27 H 0.124 0.876 28 H 0.126 0.874 29 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.912 -1.782 1.690 8.285 hybrid contribution 0.120 0.650 -0.151 0.678 sum 8.033 -1.132 1.538 8.257 Atomic orbital electron populations 1.69627 1.08441 1.31431 1.30335 1.26425 0.94874 1.02561 0.90446 0.86059 0.81337 0.78423 0.79312 1.19182 1.21702 1.16223 1.19610 0.92911 0.96313 1.33993 0.88232 1.18665 0.91783 0.89967 0.89143 1.20645 0.95930 1.07753 1.07819 1.20427 0.93297 0.95212 0.95440 1.20237 0.98583 1.02902 1.08509 1.17559 0.91790 0.93229 0.93921 1.19226 0.93801 1.00399 1.02203 1.23009 0.95774 0.96234 0.88358 1.98703 1.97920 1.71276 1.49451 1.20416 0.95648 0.96874 0.96716 1.20695 0.93670 1.02147 1.04882 1.21206 0.98998 0.92537 0.94134 1.19084 0.92612 0.99555 0.99911 0.89539 0.88285 0.89103 0.88505 0.88498 0.89325 0.87645 0.87358 0.86056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.91 13.92 55.56 0.77 -18.14 15 2 C 0.08 1.95 5.41 -17.30 -0.09 1.85 15 3 Si 0.92 19.69 24.53 -169.99 -4.17 15.52 15 4 H -0.27 -5.55 6.72 56.52 0.38 -5.17 15 5 H -0.29 -5.90 7.11 56.52 0.40 -5.50 15 6 H -0.24 -5.33 6.86 56.52 0.39 -4.94 15 7 C -0.40 -10.07 8.92 -38.03 -0.34 -10.40 15 8 H 0.10 2.54 7.06 -52.49 -0.37 2.17 15 9 C 0.11 2.65 5.26 -104.71 -0.55 2.09 15 10 C -0.30 -7.12 7.18 -38.75 -0.28 -7.40 15 11 C -0.03 -0.55 9.92 -39.82 -0.39 -0.94 15 12 C -0.28 -5.97 9.31 -38.88 -0.36 -6.33 15 13 C 0.04 0.76 5.74 -106.87 -0.61 0.15 15 14 C -0.16 -2.88 5.27 -104.45 -0.55 -3.43 15 15 C 0.03 0.43 6.30 36.01 0.23 0.65 15 16 Cl -0.20 -3.18 29.13 -51.86 -1.51 -4.69 15 17 C -0.08 -1.36 9.59 -39.96 -0.38 -1.74 15 18 C -0.20 -3.55 10.02 -39.47 -0.40 -3.95 15 19 C -0.05 -1.05 9.46 -39.30 -0.37 -1.42 15 20 C -0.11 -2.57 5.90 -104.66 -0.62 -3.18 15 21 H 0.29 6.41 8.29 -40.82 -0.34 6.07 15 22 H 0.10 2.30 4.76 -52.49 -0.25 2.05 15 23 H 0.09 1.71 8.06 -52.49 -0.42 1.29 15 24 H 0.10 1.83 6.30 -52.49 -0.33 1.49 15 25 H 0.10 1.41 6.40 -51.93 -0.33 1.08 15 26 H 0.09 1.10 8.08 -51.93 -0.42 0.68 15 27 H 0.11 1.53 8.06 -52.48 -0.42 1.11 15 28 H 0.11 1.67 8.06 -52.49 -0.42 1.24 15 29 H 0.12 2.44 6.75 -52.48 -0.35 2.09 15 LS Contribution 258.34 15.07 3.89 3.89 Total: -1.00 -25.58 258.34 -8.23 -33.81 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -2.50 Total: 3.67 kcal Atomic # 6 Polarization: -29.33 SS G_CDS: -4.72 Total: -34.06 kcal Atomic # 7 Polarization: -18.91 SS G_CDS: 0.77 Total: -18.14 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -4.17 Total: 15.52 kcal Atomic # 17 Polarization: -3.18 SS G_CDS: -1.51 Total: -4.69 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -25.58 -8.23 -33.81 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238520249.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.793 kcal (2) G-P(sol) polarization free energy of solvation -25.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds