Wall clock time and date at job start Mon Mar 30 2020 05:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30727 * 1 3 3 Si 1.86797 * 120.00275 * 2 1 4 4 H 1.48497 * 109.47291 * 275.37907 * 3 2 1 5 5 H 1.48500 * 109.47056 * 35.37790 * 3 2 1 6 6 H 1.48499 * 109.47466 * 155.37664 * 3 2 1 7 7 C 1.40162 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00155 * 342.03168 * 7 2 1 9 9 C 1.40450 * 119.99629 * 162.03625 * 7 2 1 10 10 C 1.40523 * 120.72291 * 329.94195 * 9 7 2 11 11 C 1.38156 * 120.42769 * 179.97438 * 10 9 7 12 12 C 1.37670 * 121.79325 * 359.97438 * 11 10 9 13 13 C 1.40648 * 120.79589 * 0.26923 * 12 11 10 14 14 C 1.40508 * 121.16106 * 180.28348 * 13 12 11 15 15 C 1.50701 * 120.11791 * 359.44005 * 14 13 12 16 16 Cl 1.80301 * 109.46707 * 270.25598 * 15 14 13 17 17 C 1.36332 * 119.76821 * 179.68775 * 14 13 12 18 18 C 1.39079 * 120.93381 * 359.77249 * 17 14 13 19 19 C 1.37692 * 120.71193 * 359.97438 * 18 17 14 20 20 C 1.39527 * 119.56159 * 359.97438 * 19 18 17 21 21 H 0.97005 * 120.00218 * 359.97438 * 1 2 3 22 22 H 1.08001 * 119.78703 * 359.97438 * 10 9 7 23 23 H 1.08000 * 119.09923 * 179.97438 * 11 10 9 24 24 H 1.07999 * 119.60110 * 179.97438 * 12 11 10 25 25 H 1.08997 * 109.47134 * 30.25364 * 15 14 13 26 26 H 1.08998 * 109.47516 * 150.25238 * 15 14 13 27 27 H 1.08007 * 119.53717 * 179.74801 * 17 14 13 28 28 H 1.08001 * 119.64797 * 179.97438 * 18 17 14 29 29 H 1.08003 * 120.21815 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.3752 2.1120 -1.3939 5 1 1.5003 2.6172 0.8106 6 1 3.5911 1.4100 0.5833 7 6 2.0080 -1.2139 -0.0005 8 1 1.5076 -2.1264 0.2876 9 6 3.3612 -1.2433 -0.3757 10 6 3.8691 -0.3185 -1.3038 11 6 5.2014 -0.3527 -1.6681 12 6 6.0731 -1.2803 -1.1439 13 6 5.6314 -2.2386 -0.2140 14 6 6.5157 -3.1852 0.3303 15 6 7.9634 -3.1957 -0.0881 16 17 8.1665 -4.2688 -1.5227 17 6 6.0583 -4.0973 1.2345 18 6 4.7256 -4.1033 1.6323 19 6 3.8351 -3.1857 1.1215 20 6 4.2764 -2.2401 0.1953 21 1 -0.4851 0.8401 0.0004 22 1 3.2139 0.4238 -1.7352 23 1 5.5689 0.3680 -2.3836 24 1 7.1076 -1.2752 -1.4541 25 1 8.2748 -2.1832 -0.3447 26 1 8.5763 -3.5671 0.7332 27 1 6.7404 -4.8258 1.6475 28 1 4.3855 -4.8355 2.3497 29 1 2.8019 -3.1979 1.4357 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238520249.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:50 Heat of formation + Delta-G solvation = -2.940143 kcal Electronic energy + Delta-G solvation = -14933.866398 eV Core-core repulsion = 12424.809260 eV Total energy + Delta-G solvation = -2509.057138 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.051 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.76318 -37.47297 -36.64851 -35.60215 -34.01567 -31.37011 -30.92328 -27.36634 -26.98230 -23.78439 -23.39880 -21.38376 -19.43106 -17.90906 -17.74882 -16.86636 -16.68284 -15.34502 -15.20521 -15.05925 -14.83400 -14.31046 -13.96815 -13.90419 -13.67881 -13.39994 -13.04403 -12.67907 -12.64105 -12.11446 -11.77995 -11.61972 -11.50463 -11.26823 -11.07938 -10.95578 -10.27149 -9.27052 -9.09534 -8.68809 -6.50878 -0.15912 0.48283 1.00092 1.25356 1.36682 1.46386 1.78055 2.06508 2.29174 2.80513 3.62527 3.76759 3.94876 4.18098 4.34185 4.34722 4.46315 4.56327 4.70257 4.77493 4.85705 4.99913 5.04266 5.37219 5.47084 5.53567 5.64731 5.73323 5.88578 6.00808 6.10337 6.21040 6.39407 6.60224 6.72387 7.94893 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.033245 B = 0.007405 C = 0.006475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.026285 B = 3780.283031 C = 4323.249269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.053 3.947 3 Si 0.970 3.030 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.256 1.256 7 C -0.443 4.443 8 H 0.073 0.927 9 C 0.090 3.910 10 C -0.317 4.317 11 C -0.045 4.045 12 C -0.263 4.263 13 C 0.004 3.996 14 C -0.146 4.146 15 C 0.029 3.971 16 Cl -0.203 7.203 17 C -0.079 4.079 18 C -0.173 4.173 19 C -0.080 4.080 20 C -0.136 4.136 21 H 0.302 0.698 22 H 0.095 0.905 23 H 0.119 0.881 24 H 0.125 0.875 25 H 0.105 0.895 26 H 0.126 0.874 27 H 0.148 0.852 28 H 0.141 0.859 29 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.607 -2.600 2.211 12.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.166 4.166 3 Si 0.794 3.206 4 H -0.184 1.184 5 H -0.201 1.201 6 H -0.180 1.180 7 C -0.470 4.470 8 H 0.091 0.909 9 C 0.087 3.913 10 C -0.337 4.337 11 C -0.063 4.063 12 C -0.282 4.282 13 C 0.003 3.997 14 C -0.146 4.146 15 C -0.033 4.033 16 Cl -0.177 7.177 17 C -0.097 4.097 18 C -0.191 4.191 19 C -0.099 4.099 20 C -0.137 4.137 21 H 0.113 0.887 22 H 0.113 0.887 23 H 0.137 0.863 24 H 0.142 0.858 25 H 0.124 0.876 26 H 0.144 0.856 27 H 0.166 0.834 28 H 0.159 0.841 29 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 11.311 -2.600 2.119 11.798 hybrid contribution -0.623 0.648 -0.239 0.930 sum 10.688 -1.952 1.880 11.026 Atomic orbital electron populations 1.69634 1.09173 1.32415 1.32834 1.26932 0.95356 1.04334 0.89997 0.85364 0.79522 0.76164 0.79594 1.18432 1.20059 1.17986 1.19494 0.93858 0.96034 1.37604 0.90913 1.18888 0.91856 0.91027 0.89511 1.20795 0.97080 1.07839 1.07941 1.20752 0.92684 0.96445 0.96436 1.20671 0.99641 1.01322 1.06595 1.17926 0.91819 0.94859 0.95051 1.19621 0.95161 0.98806 1.01047 1.23166 0.93789 0.97088 0.89243 1.98714 1.97799 1.71367 1.49778 1.20906 0.95792 0.97102 0.95911 1.21150 0.93711 1.00761 1.03512 1.21300 0.99520 0.93861 0.95170 1.19391 0.93487 1.00014 1.00782 0.88700 0.88720 0.86260 0.85752 0.87641 0.85607 0.83397 0.84112 0.87020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.98 13.92 21.86 0.30 -41.68 15 2 C 0.05 2.71 5.41 85.32 0.46 3.17 15 3 Si 0.97 41.74 24.53 68.60 1.68 43.43 15 4 H -0.26 -10.68 6.72 99.48 0.67 -10.01 15 5 H -0.27 -10.90 7.11 99.48 0.71 -10.19 15 6 H -0.26 -11.54 6.86 99.48 0.68 -10.86 15 7 C -0.44 -23.71 8.92 23.28 0.21 -23.50 15 8 H 0.07 4.10 7.06 -2.91 -0.02 4.07 15 9 C 0.09 4.59 5.26 -19.92 -0.10 4.49 15 10 C -0.32 -15.19 7.18 22.81 0.16 -15.02 15 11 C -0.05 -1.89 9.92 22.12 0.22 -1.68 15 12 C -0.26 -10.46 9.31 22.72 0.21 -10.25 15 13 C 0.00 0.15 5.74 -21.32 -0.12 0.03 15 14 C -0.15 -4.82 5.27 -19.76 -0.10 -4.93 15 15 C 0.03 0.72 6.30 71.24 0.45 1.17 15 16 Cl -0.20 -5.63 29.13 -2.72 -0.08 -5.71 15 17 C -0.08 -2.39 9.59 22.03 0.21 -2.18 15 18 C -0.17 -5.80 10.02 22.34 0.22 -5.58 15 19 C -0.08 -3.35 9.46 22.45 0.21 -3.14 15 20 C -0.14 -6.35 5.90 -19.89 -0.12 -6.47 15 21 H 0.30 13.79 8.29 -92.70 -0.77 13.02 15 22 H 0.10 4.51 4.76 -2.91 -0.01 4.49 15 23 H 0.12 4.23 8.06 -2.91 -0.02 4.21 15 24 H 0.12 4.18 6.30 -2.91 -0.02 4.16 15 25 H 0.11 2.52 6.40 -2.39 -0.02 2.50 15 26 H 0.13 2.31 8.08 -2.39 -0.02 2.29 15 27 H 0.15 3.29 8.06 -2.91 -0.02 3.27 15 28 H 0.14 3.77 8.06 -2.91 -0.02 3.75 15 29 H 0.11 4.77 6.75 -2.91 -0.02 4.75 15 Total: -1.00 -57.31 258.34 4.93 -52.38 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 1.11 Total: 15.46 kcal Atomic # 6 Polarization: -65.79 SS G_CDS: 1.91 Total: -63.88 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 0.30 Total: -41.68 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 1.68 Total: 43.43 kcal Atomic # 17 Polarization: -5.63 SS G_CDS: -0.08 Total: -5.71 kcal Total: -57.31 4.93 -52.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238520249.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.438 kcal (2) G-P(sol) polarization free energy of solvation -57.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds