Wall clock time and date at job start Mon Mar 30 2020 05:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30810 * 1 3 3 Si 1.86806 * 119.99926 * 2 1 4 4 H 1.48496 * 109.47243 * 270.00062 * 3 2 1 5 5 H 1.48496 * 109.46889 * 30.00174 * 3 2 1 6 6 H 1.48501 * 109.47158 * 149.99942 * 3 2 1 7 7 C 1.39971 * 120.00390 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00385 * 162.44016 * 7 2 1 9 9 C 1.41156 * 119.99794 * 342.43964 * 7 2 1 10 10 C 1.41546 * 119.87465 * 154.48656 * 9 7 2 11 11 C 1.35291 * 120.76226 * 180.02562 * 10 9 7 12 12 C 1.41117 * 120.21227 * 359.94358 * 11 10 9 13 13 C 1.41989 * 119.83112 * 0.03158 * 12 11 10 14 14 C 1.40818 * 119.36946 * 180.02562 * 13 12 11 15 15 C 1.36189 * 119.63387 * 359.73871 * 14 13 12 16 16 C 1.39244 * 120.91951 * 0.52012 * 15 14 13 17 17 C 1.36435 * 121.03090 * 359.47443 * 16 15 14 18 18 C 1.50694 * 120.10779 * 180.27801 * 17 16 15 19 19 Cl 1.80296 * 109.47244 * 89.99862 * 18 17 16 20 20 C 1.39957 * 119.60145 * 359.97438 * 13 12 11 21 21 H 0.96994 * 120.00390 * 359.97438 * 1 2 3 22 22 H 1.08000 * 119.61794 * 0.02562 * 10 9 7 23 23 H 1.08000 * 119.89392 * 179.97438 * 11 10 9 24 24 H 1.07998 * 120.18243 * 180.02562 * 14 13 12 25 25 H 1.08005 * 119.54012 * 180.27083 * 15 14 13 26 26 H 1.08001 * 119.49079 * 179.74675 * 16 15 14 27 27 H 1.09004 * 109.47095 * 210.00014 * 18 17 16 28 28 H 1.09000 * 109.47200 * 329.99507 * 18 17 16 29 29 H 1.07994 * 120.32893 * 180.02562 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.4896 2.0465 -1.4000 5 1 1.4395 2.6526 0.7001 6 1 3.5397 1.4403 0.7001 7 6 2.0080 -1.2121 -0.0005 8 1 3.0503 -1.2338 -0.2827 9 6 1.3516 -2.4063 0.3678 10 6 1.8226 -3.6489 -0.1197 11 6 1.2069 -4.8043 0.2214 12 6 0.0819 -4.7848 1.0731 13 6 -0.4047 -3.5479 1.5724 14 6 -1.5277 -3.5398 2.4220 15 6 -2.1337 -4.7150 2.7483 16 6 -1.6520 -5.9276 2.2620 17 6 -0.5665 -5.9730 1.4367 18 6 -0.0665 -7.2964 0.9175 19 17 -0.8883 -7.6799 -0.6408 20 6 0.2378 -2.3571 1.2147 21 1 -0.4850 0.8400 0.0004 22 1 2.6834 -3.6750 -0.7714 23 1 1.5778 -5.7446 -0.1590 24 1 -1.9091 -2.6065 2.8090 25 1 -2.9975 -4.7067 3.3965 26 1 -2.1480 -6.8462 2.5388 27 1 1.0101 -7.2402 0.7563 28 1 -0.2845 -8.0780 1.6452 29 1 -0.1221 -1.4098 1.5879 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238520444.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:03 Heat of formation + Delta-G solvation = -1.665352 kcal Electronic energy + Delta-G solvation = -14776.865904 eV Core-core repulsion = 12267.864045 eV Total energy + Delta-G solvation = -2509.001859 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.051 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.78800 -37.61982 -36.76543 -35.21346 -33.95108 -31.34864 -30.39730 -27.38860 -27.18726 -23.72226 -23.09936 -21.30343 -19.44154 -17.93137 -17.50052 -16.59173 -16.48950 -15.36275 -15.21646 -14.99379 -14.42048 -14.25605 -14.00186 -13.78242 -13.63878 -13.14998 -12.81804 -12.60473 -12.57640 -12.15671 -11.79000 -11.69262 -11.40357 -11.19669 -11.08072 -10.94734 -10.31503 -9.23193 -8.67878 -8.50305 -6.31975 -0.10550 0.58779 1.20517 1.36980 1.43466 1.52002 1.85597 2.17415 2.33730 3.03650 3.71795 3.81506 3.99415 4.21567 4.31564 4.39123 4.53845 4.65500 4.73893 4.95994 5.00333 5.17467 5.21744 5.33387 5.53465 5.70318 5.71961 5.83907 5.96866 6.08898 6.26147 6.39758 6.66505 6.87434 6.96749 8.28969 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.033962 B = 0.006363 C = 0.005675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.258390 B = 4399.093828 C = 4932.724134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.033 3.967 3 Si 0.982 3.018 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.257 1.257 7 C -0.489 4.489 8 H 0.082 0.918 9 C 0.073 3.927 10 C -0.173 4.173 11 C -0.101 4.101 12 C -0.132 4.132 13 C -0.031 4.031 14 C -0.150 4.150 15 C -0.112 4.112 16 C -0.152 4.152 17 C -0.078 4.078 18 C 0.020 3.980 19 Cl -0.198 7.198 20 C -0.231 4.231 21 H 0.288 0.712 22 H 0.112 0.888 23 H 0.132 0.868 24 H 0.110 0.890 25 H 0.141 0.859 26 H 0.143 0.857 27 H 0.108 0.892 28 H 0.129 0.871 29 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.743 -8.731 3.288 9.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.183 4.183 3 Si 0.802 3.198 4 H -0.185 1.185 5 H -0.193 1.193 6 H -0.180 1.180 7 C -0.517 4.517 8 H 0.100 0.900 9 C 0.070 3.930 10 C -0.192 4.192 11 C -0.119 4.119 12 C -0.132 4.132 13 C -0.031 4.031 14 C -0.168 4.168 15 C -0.129 4.129 16 C -0.171 4.171 17 C -0.079 4.079 18 C -0.042 4.042 19 Cl -0.171 7.171 20 C -0.252 4.252 21 H 0.099 0.901 22 H 0.130 0.870 23 H 0.150 0.850 24 H 0.128 0.872 25 H 0.159 0.841 26 H 0.161 0.839 27 H 0.126 0.874 28 H 0.147 0.853 29 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.998 -8.618 3.141 9.226 hybrid contribution 0.184 1.222 -0.275 1.266 sum -0.814 -7.395 2.866 7.973 Atomic orbital electron populations 1.69897 1.09205 1.30625 1.34566 1.26801 0.95437 1.04673 0.91355 0.85206 0.79152 0.75823 0.79585 1.18538 1.19257 1.18041 1.19906 0.98383 0.92436 1.41025 0.90004 1.17939 0.92422 0.93024 0.89571 1.21225 1.02196 0.93088 1.02683 1.20865 0.95416 0.97793 0.97791 1.17822 0.99191 0.92543 1.03689 1.18298 0.95236 0.93347 0.96206 1.21136 0.96680 0.98731 1.00291 1.20908 0.99975 0.91913 1.00153 1.20729 0.97351 0.98459 1.00529 1.19611 0.97001 0.93054 0.98208 1.23292 0.99285 0.95551 0.86092 1.98718 1.83266 1.94993 1.40159 1.21167 1.02795 0.95632 1.05568 0.90107 0.87019 0.85050 0.87223 0.84147 0.83914 0.87416 0.85280 0.88337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.34 10.99 21.83 0.24 -43.10 15 2 C 0.03 1.66 5.12 85.26 0.44 2.10 15 3 Si 0.98 37.89 29.59 68.60 2.03 39.92 15 4 H -0.26 -9.64 7.11 99.48 0.71 -8.93 15 5 H -0.27 -9.92 7.11 99.48 0.71 -9.22 15 6 H -0.26 -9.66 7.11 99.48 0.71 -8.95 15 7 C -0.49 -26.05 9.02 23.41 0.21 -25.84 15 8 H 0.08 4.12 7.91 -2.91 -0.02 4.10 15 9 C 0.07 3.92 5.56 -21.32 -0.12 3.80 15 10 C -0.17 -8.19 9.66 22.41 0.22 -7.97 15 11 C -0.10 -4.23 9.23 22.30 0.21 -4.02 15 12 C -0.13 -5.65 5.75 -21.18 -0.12 -5.77 15 13 C -0.03 -1.48 5.74 -21.30 -0.12 -1.60 15 14 C -0.15 -6.25 9.77 22.42 0.22 -6.03 15 15 C -0.11 -3.77 9.95 22.03 0.22 -3.55 15 16 C -0.15 -4.77 9.60 22.09 0.21 -4.55 15 17 C -0.08 -2.68 5.26 -19.82 -0.10 -2.78 15 18 C 0.02 0.50 6.29 71.23 0.45 0.95 15 19 Cl -0.20 -5.67 29.13 -2.72 -0.08 -5.75 15 20 C -0.23 -12.52 8.43 23.12 0.19 -12.33 15 21 H 0.29 13.82 8.30 -92.71 -0.77 13.05 15 22 H 0.11 4.80 8.06 -2.91 -0.02 4.78 15 23 H 0.13 4.52 6.30 -2.91 -0.02 4.50 15 24 H 0.11 4.42 8.06 -2.91 -0.02 4.39 15 25 H 0.14 3.70 8.06 -2.91 -0.02 3.67 15 26 H 0.14 3.39 8.06 -2.91 -0.02 3.37 15 27 H 0.11 2.58 6.38 -2.39 -0.02 2.56 15 28 H 0.13 2.43 8.08 -2.39 -0.02 2.41 15 29 H 0.10 5.64 6.19 -2.91 -0.02 5.62 15 Total: -1.00 -60.42 265.80 5.25 -55.17 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 1.16 Total: 21.35 kcal Atomic # 6 Polarization: -69.49 SS G_CDS: 1.90 Total: -67.59 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: 0.24 Total: -43.10 kcal Atomic # 14 Polarization: 37.89 SS G_CDS: 2.03 Total: 39.92 kcal Atomic # 17 Polarization: -5.67 SS G_CDS: -0.08 Total: -5.75 kcal Total: -60.42 5.25 -55.17 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238520444.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.505 kcal (2) G-P(sol) polarization free energy of solvation -60.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds