Wall clock time and date at job start Mon Mar 30 2020 05:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30815 * 1 3 3 Si 1.86801 * 119.99816 * 2 1 4 4 H 1.48497 * 109.47294 * 240.00298 * 3 2 1 5 5 H 1.48503 * 109.47271 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47486 * 119.99972 * 3 2 1 7 7 C 1.39970 * 120.00266 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99975 * 162.56251 * 7 2 1 9 9 C 1.41156 * 120.00055 * 342.55454 * 7 2 1 10 10 C 1.41534 * 119.87914 * 154.49752 * 9 7 2 11 11 C 1.35297 * 120.76200 * 179.74565 * 10 9 7 12 12 C 1.41101 * 120.21322 * 359.97438 * 11 10 9 13 13 C 1.40193 * 120.91234 * 180.02562 * 12 11 10 14 14 C 1.36390 * 119.78707 * 179.97438 * 13 12 11 15 15 C 1.39285 * 121.03798 * 0.02562 * 14 13 12 16 16 C 1.36160 * 120.91292 * 359.97438 * 15 14 13 17 17 C 1.50691 * 120.18498 * 180.02562 * 16 15 14 18 18 Cl 1.80302 * 109.47198 * 270.00207 * 17 16 15 19 19 C 1.40856 * 119.63458 * 0.04367 * 16 15 14 20 20 C 1.39944 * 121.02121 * 179.97438 * 19 16 15 21 21 H 0.97001 * 119.99926 * 359.97438 * 1 2 3 22 22 H 1.08002 * 119.61727 * 359.71739 * 10 9 7 23 23 H 1.08003 * 119.88907 * 179.97438 * 11 10 9 24 24 H 1.08002 * 120.10758 * 359.96540 * 13 12 11 25 25 H 1.08001 * 119.47939 * 180.02562 * 14 13 12 26 26 H 1.07996 * 119.54757 * 179.97438 * 15 14 13 27 27 H 1.09000 * 109.47237 * 29.99449 * 17 16 15 28 28 H 1.08997 * 109.47704 * 150.00089 * 17 16 15 29 29 H 1.08007 * 120.33286 * 359.97438 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.0958 1.6965 -1.2125 5 1 1.2771 2.7465 -0.0006 6 1 3.0959 1.6966 1.2125 7 6 2.0081 -1.2121 -0.0005 8 1 3.0508 -1.2335 -0.2808 9 6 1.3510 -2.4067 0.3654 10 6 1.8229 -3.6488 -0.1222 11 6 1.2099 -4.8050 0.2212 12 6 0.0867 -4.7868 1.0750 13 6 -0.5594 -5.9760 1.4407 14 6 -1.6430 -5.9317 2.2678 15 6 -2.1230 -4.7197 2.7584 16 6 -1.5227 -3.5436 2.4260 17 6 -2.0554 -2.2418 2.9667 18 17 -3.2920 -1.5812 1.8331 19 6 -0.4013 -3.5505 1.5737 20 6 0.2376 -2.3588 1.2129 21 1 -0.4850 0.8401 0.0004 22 1 2.6819 -3.6738 -0.7763 23 1 1.5816 -5.7449 -0.1594 24 1 -0.2003 -6.9242 1.0686 25 1 -2.1366 -6.8509 2.5467 26 1 -2.9831 -4.7126 3.4114 27 1 -2.5112 -2.4128 3.9420 28 1 -1.2374 -1.5285 3.0679 29 1 -0.1236 -1.4117 1.5857 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238520619.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:06 Heat of formation + Delta-G solvation = 10.431817 kcal Electronic energy + Delta-G solvation = -15002.611904 eV Core-core repulsion = 12494.134617 eV Total energy + Delta-G solvation = -2508.477287 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.051 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.09765 -35.88114 -35.17450 -33.53282 -32.18402 -29.62479 -28.64081 -26.28370 -24.99589 -21.98421 -21.41139 -19.68769 -17.70432 -16.12713 -15.84258 -14.94848 -14.80818 -13.78033 -13.61446 -13.36811 -12.92116 -12.51960 -12.25231 -12.16458 -11.99105 -11.50856 -11.20564 -11.04050 -10.84763 -10.55563 -10.07099 -10.01031 -9.73386 -9.54840 -9.42193 -9.16279 -8.61358 -7.49206 -6.87216 -6.78804 -4.42240 1.54139 2.27618 2.93048 2.97356 3.01506 3.03930 3.51441 3.83279 4.03621 4.77132 5.34323 5.41163 5.61591 5.71902 5.83582 5.94112 6.06246 6.12647 6.35525 6.59842 6.70769 6.87339 6.98421 7.02630 7.22957 7.33235 7.44385 7.52093 7.70214 7.89369 8.04765 8.11272 8.49710 8.71713 8.79175 10.04976 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.021180 B = 0.009554 C = 0.006883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.689655 B = 2930.094835 C = 4066.846629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.073 3.927 3 Si 0.907 3.093 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.447 4.447 8 H 0.080 0.920 9 C 0.105 3.895 10 C -0.157 4.157 11 C -0.104 4.104 12 C -0.139 4.139 13 C -0.068 4.068 14 C -0.198 4.198 15 C -0.091 4.091 16 C -0.132 4.132 17 C 0.025 3.975 18 Cl -0.190 7.190 19 C 0.013 3.987 20 C -0.210 4.210 21 H 0.285 0.715 22 H 0.099 0.901 23 H 0.099 0.901 24 H 0.104 0.896 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.083 0.917 28 H 0.098 0.902 29 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.591 -2.740 3.885 5.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.148 4.148 3 Si 0.731 3.269 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.475 4.475 8 H 0.098 0.902 9 C 0.102 3.898 10 C -0.175 4.175 11 C -0.122 4.122 12 C -0.140 4.140 13 C -0.086 4.086 14 C -0.217 4.217 15 C -0.109 4.109 16 C -0.132 4.132 17 C -0.037 4.037 18 Cl -0.163 7.163 19 C 0.013 3.987 20 C -0.229 4.229 21 H 0.097 0.903 22 H 0.117 0.883 23 H 0.117 0.883 24 H 0.122 0.878 25 H 0.120 0.880 26 H 0.120 0.880 27 H 0.102 0.898 28 H 0.116 0.884 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.893 -2.502 3.773 4.907 hybrid contribution 0.246 0.721 -0.192 0.786 sum -1.647 -1.781 3.581 4.325 Atomic orbital electron populations 1.69828 1.07373 1.29811 1.31686 1.25959 0.94834 1.01358 0.92675 0.86372 0.80220 0.80218 0.80061 1.18954 1.20132 1.18708 1.19632 0.97914 0.91269 1.38656 0.90223 1.17596 0.91724 0.91607 0.88862 1.21045 1.01299 0.93207 1.01980 1.20543 0.96020 0.97107 0.98566 1.17702 0.99320 0.92562 1.04410 1.20816 0.95052 0.96530 0.96199 1.20251 1.00416 0.96668 1.04342 1.20360 0.98481 0.92412 0.99679 1.19365 0.98122 0.92948 1.02794 1.22960 0.92871 0.95708 0.92132 1.98702 1.60905 1.88047 1.68673 1.17749 0.93176 0.93479 0.94336 1.21254 1.01625 0.95662 1.04399 0.90335 0.88309 0.88317 0.87759 0.88011 0.87964 0.89823 0.88381 0.85557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.89 10.99 55.55 0.61 -18.28 15 2 C 0.07 1.73 5.12 -17.34 -0.09 1.64 15 3 Si 0.91 17.79 29.59 -169.99 -5.03 12.76 15 4 H -0.26 -5.14 7.11 56.52 0.40 -4.74 15 5 H -0.28 -5.33 7.11 56.52 0.40 -4.93 15 6 H -0.26 -5.12 7.11 56.52 0.40 -4.72 15 7 C -0.45 -11.15 9.02 -37.83 -0.34 -11.49 15 8 H 0.08 1.88 7.90 -52.49 -0.41 1.47 15 9 C 0.10 2.66 5.56 -106.87 -0.59 2.06 15 10 C -0.16 -3.60 9.66 -39.37 -0.38 -3.98 15 11 C -0.10 -2.23 9.71 -39.54 -0.38 -2.62 15 12 C -0.14 -3.10 5.75 -106.65 -0.61 -3.71 15 13 C -0.07 -1.31 9.74 -39.51 -0.39 -1.69 15 14 C -0.20 -3.60 9.95 -39.86 -0.40 -4.00 15 15 C -0.09 -1.69 9.59 -39.94 -0.38 -2.07 15 16 C -0.13 -2.70 5.28 -104.38 -0.55 -3.26 15 17 C 0.03 0.47 6.30 36.00 0.23 0.69 15 18 Cl -0.19 -3.67 29.13 -51.86 -1.51 -5.18 15 19 C 0.01 0.31 5.74 -106.84 -0.61 -0.31 15 20 C -0.21 -5.24 7.95 -38.28 -0.30 -5.54 15 21 H 0.29 6.53 8.30 -40.82 -0.34 6.19 15 22 H 0.10 2.06 8.06 -52.49 -0.42 1.64 15 23 H 0.10 1.80 8.06 -52.48 -0.42 1.37 15 24 H 0.10 1.72 8.06 -52.49 -0.42 1.29 15 25 H 0.10 1.55 8.06 -52.49 -0.42 1.13 15 26 H 0.10 1.62 8.06 -52.49 -0.42 1.20 15 27 H 0.08 1.26 8.08 -51.93 -0.42 0.84 15 28 H 0.10 1.86 6.42 -51.93 -0.33 1.53 15 29 H 0.13 3.22 4.48 -52.48 -0.24 2.98 15 LS Contribution 265.89 15.07 4.01 4.01 Total: -1.00 -26.30 265.89 -9.38 -35.68 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -2.65 Total: 5.27 kcal Atomic # 6 Polarization: -29.45 SS G_CDS: -4.81 Total: -34.26 kcal Atomic # 7 Polarization: -18.89 SS G_CDS: 0.61 Total: -18.28 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.03 Total: 12.76 kcal Atomic # 17 Polarization: -3.67 SS G_CDS: -1.51 Total: -5.18 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -26.30 -9.38 -35.68 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238520619.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.116 kcal (2) G-P(sol) polarization free energy of solvation -26.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds